Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30844 * 125.89419 * 2 1 4 4 N 1.40083 * 108.20198 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46848 * 90.02225 * 5 4 3 7 7 H 1.08002 * 120.00148 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99807 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00063 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99956 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47046 * 90.00087 * 10 8 6 12 12 H 1.48494 * 109.47311 * 210.00048 * 10 8 6 13 13 H 1.48501 * 109.47132 * 330.00417 * 10 8 6 14 14 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 15 15 C 1.50702 * 126.12865 * 179.97438 * 14 4 3 16 16 C 1.35320 * 107.74569 * 0.02562 * 14 4 3 17 17 S 1.76193 * 126.03942 * 180.02562 * 16 14 4 18 18 O 1.42100 * 106.40268 * 23.53880 * 17 16 14 19 19 O 1.42106 * 106.40372 * 156.45620 * 17 16 14 20 20 N 1.65597 * 107.21948 * 269.99904 * 17 16 14 21 21 C 1.47157 * 120.97869 * 269.72149 * 20 17 16 22 22 C 1.53708 * 108.16137 * 129.43145 * 21 20 17 23 23 O 1.42965 * 109.15051 * 52.53721 * 22 21 20 24 24 C 1.42963 * 114.16369 * 297.28626 * 23 22 21 25 25 C 1.47154 * 120.98569 * 89.99765 * 20 17 16 26 26 H 1.09001 * 109.47171 * 90.02700 * 1 2 3 27 27 H 1.09000 * 109.47391 * 210.02261 * 1 2 3 28 28 H 1.09000 * 109.47782 * 330.02806 * 1 2 3 29 29 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 30 30 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 31 31 H 0.97001 * 120.00462 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47435 * 270.05935 * 15 14 4 33 33 H 1.09007 * 109.46847 * 30.05958 * 15 14 4 34 34 H 1.08997 * 109.46886 * 150.05639 * 15 14 4 35 35 H 1.09000 * 109.68005 * 249.20630 * 21 20 17 36 36 H 1.08996 * 109.68497 * 9.75962 * 21 20 17 37 37 H 1.09002 * 109.65591 * 292.57033 * 22 21 20 38 38 H 1.09002 * 109.48613 * 172.39833 * 22 21 20 39 39 H 1.08997 * 109.51312 * 302.66291 * 24 23 22 40 40 H 1.08999 * 109.55281 * 182.52694 * 24 23 22 41 41 H 1.09000 * 109.67734 * 350.23998 * 25 20 17 42 42 H 1.08996 * 109.67660 * 110.75356 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6343 0.0006 5 6 4.7898 1.5009 0.0003 6 6 5.1948 1.7986 1.4210 7 1 4.6292 1.3834 2.2420 8 6 6.2874 2.6011 1.6726 9 7 6.9758 3.1071 0.6729 10 14 6.7898 2.9695 3.4337 11 1 7.7518 1.9387 3.8999 12 1 7.4297 4.3080 3.4962 13 1 5.5874 2.9544 4.3050 14 6 3.6142 -0.7152 0.0015 15 6 4.8351 -1.5988 0.0019 16 6 2.3271 -1.1330 0.0009 17 16 1.7809 -2.8081 0.0024 18 8 2.8443 -3.5764 0.5485 19 8 0.4679 -2.8016 0.5458 20 7 1.6302 -3.2759 -1.5790 21 6 0.3600 -3.1044 -2.3019 22 6 0.6577 -2.3934 -3.6317 23 8 1.6896 -3.1025 -4.3218 24 6 2.9398 -3.1370 -3.6293 25 6 2.7607 -3.8810 -2.3011 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3635 0.8902 0.5134 29 1 5.6092 0.9982 -0.5134 30 1 4.5562 2.4332 -0.5138 31 1 7.7443 3.6720 0.8499 32 1 5.1298 -1.8117 -1.0256 33 1 5.6510 -1.0908 0.5161 34 1 4.6074 -2.5328 0.5155 35 1 -0.0866 -4.0796 -2.4958 36 1 -0.3230 -2.4993 -1.7056 37 1 0.9857 -1.3724 -3.4362 38 1 -0.2438 -2.3752 -4.2441 39 1 3.2760 -2.1187 -3.4338 40 1 3.6805 -3.6542 -4.2392 41 1 3.6682 -3.7904 -1.7042 42 1 2.5519 -4.9332 -2.4942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007987909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -49.259502 kcal Electronic energy + Delta-G solvation = -27752.104332 eV Core-core repulsion = 23860.892932 eV Total energy + Delta-G solvation = -3891.211399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.81576 -39.31062 -37.16082 -35.65954 -34.89619 -34.25096 -32.69815 -31.59447 -31.50357 -29.19749 -27.20592 -26.89512 -26.12995 -24.37234 -23.12569 -21.63101 -20.55707 -19.13334 -18.90196 -17.80813 -16.94872 -16.62082 -16.51366 -15.82425 -15.57057 -15.25472 -15.18691 -14.72610 -14.52400 -14.40356 -14.12160 -13.55158 -13.15821 -13.11836 -12.75109 -12.68050 -12.41340 -12.14925 -12.12094 -11.93681 -11.89158 -11.81722 -11.72148 -11.57378 -11.30236 -11.21482 -10.99271 -10.85051 -10.66847 -10.49402 -10.38799 -9.97554 -9.93642 -8.97917 -8.79027 -8.64807 -8.41633 -6.41851 -4.50450 0.63864 2.15491 2.72088 3.13094 3.13295 3.20134 3.24223 3.33445 3.64969 4.00626 4.17961 4.34638 4.61726 4.63977 4.89887 4.90495 4.93924 5.00069 5.04151 5.16144 5.19873 5.37876 5.39040 5.46413 5.56555 5.64327 5.71623 5.75020 5.78743 5.91857 5.93422 6.15166 6.31269 6.36334 6.45880 6.73312 6.79829 6.91901 7.07949 7.47169 7.67141 7.67936 8.22089 8.55545 9.17436 10.66311 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.003993 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.225868 B = 7010.881776 C = 7237.636616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 N -0.290 5.290 4 N -0.310 5.310 5 C 0.248 3.752 6 C -0.544 4.544 7 H 0.066 0.934 8 C 0.069 3.931 9 N -0.889 5.889 10 Si 0.909 3.091 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.208 3.792 15 C -0.134 4.134 16 C -0.841 4.841 17 S 2.727 3.273 18 O -0.965 6.965 19 O -0.963 6.963 20 N -1.005 6.005 21 C 0.090 3.910 22 C 0.046 3.954 23 O -0.379 6.379 24 C 0.046 3.954 25 C 0.089 3.911 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.270 0.730 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 -13.069 -8.845 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.034 4.034 3 N -0.110 5.110 4 N -0.084 5.084 5 C 0.131 3.869 6 C -0.583 4.583 7 H 0.084 0.916 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.735 3.265 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.196 1.196 14 C 0.068 3.932 15 C -0.192 4.192 16 C -0.943 4.943 17 S 2.820 3.180 18 O -0.955 6.955 19 O -0.954 6.954 20 N -0.842 5.842 21 C -0.036 4.036 22 C -0.032 4.032 23 O -0.297 6.297 24 C -0.032 4.032 25 C -0.037 4.037 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.202 -12.088 -8.348 17.335 hybrid contribution 0.761 0.515 0.855 1.255 sum -8.441 -11.573 -7.493 16.165 Atomic orbital electron populations 1.20616 0.86744 1.05356 1.03097 1.21669 0.96174 0.88828 0.96687 1.77360 0.87232 1.22373 1.24066 1.49888 1.06476 1.04385 1.47647 1.19906 0.77579 0.89776 0.99635 1.21252 1.13549 1.32564 0.90899 0.91585 1.24924 0.95496 0.94667 0.98441 1.69905 1.18903 1.32566 1.31207 0.86305 0.78927 0.77938 0.83300 1.20084 1.20703 1.19572 1.20830 0.94780 0.85982 0.91566 1.21123 0.94231 0.99931 1.03953 1.30605 1.00239 1.22839 1.40581 1.00614 0.73068 0.72911 0.71385 1.93473 1.56826 1.69428 1.75754 1.93468 1.38570 1.87535 1.75806 1.57990 1.18341 1.76256 1.31644 1.22152 0.85065 1.02234 0.94148 1.23055 0.91840 0.95148 0.93180 1.87928 1.20366 1.76072 1.45344 1.22980 0.86438 1.00634 0.93169 1.22082 0.89426 0.97980 0.94218 0.90777 0.87775 0.90482 0.92490 0.92427 0.92015 0.90017 0.88613 0.86724 0.90257 0.88219 0.92319 0.87849 0.92384 0.87740 0.88222 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.15 36.00 0.37 -1.06 16 2 C 0.14 2.54 7.21 -82.41 -0.59 1.94 16 3 N -0.29 -6.41 12.58 33.67 0.42 -5.99 16 4 N -0.31 -6.94 3.60 -58.31 -0.21 -7.15 16 5 C 0.25 6.09 5.82 -5.19 -0.03 6.06 16 6 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 7 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.20 13.29 55.43 0.74 -23.47 16 10 Si 0.91 20.70 29.54 -169.99 -5.02 15.67 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.21 4.03 6.92 -82.26 -0.57 3.46 16 15 C -0.13 -2.16 9.57 36.01 0.34 -1.82 16 16 C -0.84 -14.98 6.17 -40.01 -0.25 -15.23 16 17 S 2.73 41.24 5.74 -107.50 -0.62 40.63 16 18 O -0.96 -16.02 14.05 -57.17 -0.80 -16.82 16 19 O -0.96 -15.67 14.16 -57.17 -0.81 -16.48 16 20 N -1.00 -11.75 3.34 -112.82 -0.38 -12.12 16 21 C 0.09 0.87 6.60 -3.32 -0.02 0.84 16 22 C 0.05 0.43 7.00 37.53 0.26 0.69 16 23 O -0.38 -4.09 10.74 -35.23 -0.38 -4.46 16 24 C 0.05 0.44 6.98 37.31 0.26 0.70 16 25 C 0.09 0.88 6.57 -3.53 -0.02 0.86 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 1.47 5.66 -51.93 -0.29 1.17 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.36 7.66 -51.93 -0.40 0.96 16 30 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.65 7.72 -51.93 -0.40 1.25 16 34 H 0.11 1.77 5.55 -51.93 -0.29 1.48 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.90 7.24 -51.93 -0.38 0.53 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.95 7.25 -51.93 -0.38 0.57 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -32.54 354.79 -8.29 -40.83 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.91 Total: 0.76 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.67 Total: -16.73 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.57 Total: -48.73 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.99 Total: -37.77 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 41.24 SS G_CDS: -0.62 Total: 40.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.54 -8.29 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007987909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.434 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds