Wall clock time and date at job start Tue Mar 31 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35861 * 116.99882 * 2 1 4 4 C 1.39223 * 119.76207 * 359.72550 * 3 2 1 5 5 C 1.36587 * 120.47473 * 179.71858 * 4 3 2 6 6 C 1.39848 * 119.86183 * 0.55042 * 5 4 3 7 7 C 1.46605 * 120.91302 * 179.81708 * 6 5 4 8 8 C 1.50703 * 120.41020 * 359.97438 * 7 6 5 9 9 C 1.35226 * 119.17191 * 180.09505 * 7 6 5 10 10 C 1.41479 * 120.40595 * 359.86388 * 9 7 6 11 11 N 1.32056 * 132.38690 * 180.02562 * 10 9 7 12 12 N 1.28561 * 109.84366 * 179.97438 * 11 10 9 13 13 C 1.31464 * 110.24197 * 359.97438 * 12 11 10 14 14 S 1.76199 * 126.39551 * 180.02562 * 13 12 11 15 15 C 1.81002 * 100.00091 * 359.95379 * 14 13 12 16 16 C 1.50701 * 109.46833 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99891 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46585 * 59.99820 * 20 18 16 22 22 H 1.48501 * 109.47178 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46752 * 299.99888 * 20 18 16 24 24 N 1.36462 * 107.20312 * 0.02562 * 13 12 11 25 25 C 1.38400 * 133.22679 * 179.97438 * 24 13 12 26 26 C 1.38465 * 119.75926 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46558 * 60.00278 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00230 * 1 2 3 30 30 H 1.08000 * 119.75779 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.06545 * 180.27537 * 5 4 3 32 32 H 1.09000 * 109.47059 * 270.11369 * 8 7 6 33 33 H 1.08996 * 109.47440 * 30.11388 * 8 7 6 34 34 H 1.09000 * 109.46911 * 150.11659 * 8 7 6 35 35 H 1.07997 * 119.79702 * 179.88726 * 9 7 6 36 36 H 1.09002 * 109.46919 * 300.00361 * 15 14 13 37 37 H 1.09004 * 109.46995 * 60.00158 * 15 14 13 38 38 H 0.97000 * 119.99928 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.11355 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2827 2.3750 -0.0058 5 6 1.8875 3.5996 -0.0001 6 6 3.2833 3.6869 0.0000 7 6 3.9565 4.9892 0.0020 8 6 3.1523 6.2637 0.0035 9 6 5.3081 5.0326 0.0001 10 6 6.0629 3.8359 -0.0010 11 7 7.3628 3.6033 -0.0024 12 7 7.5794 2.3361 -0.0023 13 6 6.4402 1.6800 -0.0003 14 16 6.2421 -0.0709 0.0011 15 6 7.9780 -0.5836 -0.0023 16 6 8.0572 -2.0885 -0.0022 17 1 7.1516 -2.6769 0.0002 18 6 9.2859 -2.7141 -0.0040 19 7 10.3887 -1.9975 -0.0064 20 14 9.3842 -4.5795 -0.0032 21 1 8.7090 -5.1112 -1.2142 22 1 10.8084 -5.0002 -0.0061 23 1 8.7134 -5.1099 1.2108 24 7 5.4398 2.6081 0.0004 25 6 4.0591 2.5135 0.0019 26 6 3.4289 1.2772 0.0005 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2047 2.3094 -0.0098 31 1 1.2891 4.4986 -0.0001 32 1 2.9570 6.5713 -1.0238 33 1 2.2064 6.0959 0.5185 34 1 3.7117 7.0457 0.5168 35 1 5.8144 5.9865 -0.0003 36 1 8.4701 -0.1942 -0.8936 37 1 8.4739 -0.1932 0.8864 38 1 11.2531 -2.4376 -0.0081 39 1 4.0151 0.3702 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009221586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:28 Heat of formation + Delta-G solvation = 76.976058 kcal Electronic energy + Delta-G solvation = -24637.016356 eV Core-core repulsion = 21058.587860 eV Total energy + Delta-G solvation = -3578.428495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.06351 -40.49316 -38.61640 -35.61930 -34.83835 -33.19397 -31.23172 -30.70258 -29.43771 -28.69766 -27.53390 -27.41540 -24.35514 -23.36704 -23.22540 -21.87758 -21.41929 -19.34089 -18.66488 -17.25039 -16.84914 -16.41995 -16.30393 -16.21375 -15.95862 -15.64251 -14.72720 -14.55992 -14.27820 -14.01615 -13.88844 -13.20965 -13.15084 -13.10824 -12.79394 -12.43203 -12.42730 -12.30273 -11.86660 -11.79365 -11.47289 -11.23191 -11.17559 -10.91607 -10.90684 -10.66557 -10.61726 -10.26823 -9.66452 -9.29230 -9.20366 -8.85043 -8.63563 -8.12416 -6.82345 -6.19907 -4.28857 0.37570 0.60180 1.52998 1.64780 2.40052 2.51831 3.01944 3.17509 3.27261 3.28456 3.31110 3.38640 3.61067 4.14078 4.24840 4.32191 4.33498 4.51073 4.56385 4.76289 4.83375 4.86715 5.03937 5.15287 5.16151 5.17768 5.24761 5.28890 5.31995 5.57253 5.65458 5.69529 5.82814 5.95176 6.11532 6.13840 6.21191 6.41898 6.91298 7.04381 7.09198 7.20119 7.66690 7.91536 8.71299 8.79606 9.34744 10.90367 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003811 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.918037 B = 7345.933151 C = 9489.098238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.163 3.837 4 C -0.208 4.208 5 C -0.042 4.042 6 C -0.106 4.106 7 C -0.052 4.052 8 C -0.109 4.109 9 C -0.080 4.080 10 C 0.190 3.810 11 N -0.267 5.267 12 N -0.260 5.260 13 C 0.172 3.828 14 S -0.037 6.037 15 C 0.071 3.929 16 C -0.528 4.528 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.881 5.881 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.405 5.405 25 C 0.190 3.810 26 C -0.166 4.166 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.269 0.731 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.642 13.123 -0.002 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.116 3.884 4 C -0.228 4.228 5 C -0.061 4.061 6 C -0.108 4.108 7 C -0.058 4.058 8 C -0.166 4.166 9 C -0.101 4.101 10 C -0.068 4.068 11 N -0.110 5.110 12 N -0.103 5.103 13 C -0.197 4.197 14 S 0.195 5.805 15 C -0.076 4.076 16 C -0.568 4.568 17 H 0.086 0.914 18 C -0.134 4.134 19 N -0.517 5.517 20 Si 0.735 3.265 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 N -0.092 5.092 25 C 0.091 3.909 26 C -0.188 4.188 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.172 0.828 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.598 12.395 -0.001 25.774 hybrid contribution -0.152 -0.387 -0.006 0.416 sum -22.750 12.008 -0.007 25.725 Atomic orbital electron populations 1.23150 0.77932 1.04461 1.01432 1.86157 1.21655 1.26177 1.87845 1.18704 0.91112 0.84631 0.93959 1.21032 1.00594 0.91960 1.09197 1.20623 0.91960 0.97826 0.95665 1.18441 0.93320 0.90623 1.08454 1.20677 0.92978 0.93620 0.98571 1.20756 0.99614 0.93179 1.03009 1.19783 0.92025 0.94844 1.03429 1.22227 0.90530 0.86259 1.07735 1.74605 1.09875 1.08488 1.18021 1.74881 1.19311 0.97736 1.18377 1.27465 0.84941 1.00065 1.07200 1.85433 1.21807 0.83030 1.90246 1.21482 0.83624 0.99814 1.02707 1.20526 0.93212 0.88533 1.54545 0.91450 1.24941 0.94999 0.99130 0.94305 1.69977 0.97807 1.35967 1.47956 0.86391 0.77263 0.83903 0.78966 1.19819 1.20907 1.19814 1.43769 1.05067 1.07676 1.52668 1.17339 0.79942 0.94186 0.99411 1.20275 0.92615 0.97428 1.08445 0.92378 0.87824 0.92369 0.84398 0.83948 0.90309 0.90892 0.90533 0.82831 0.92706 0.92704 0.92172 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.80 101.05 0.99 1.15 16 2 O -0.31 -3.55 10.48 -19.30 -0.20 -3.76 16 3 C 0.16 2.01 6.68 -39.13 -0.26 1.75 16 4 C -0.21 -1.88 8.96 -39.81 -0.36 -2.24 16 5 C -0.04 -0.37 9.34 -39.58 -0.37 -0.74 16 6 C -0.11 -1.30 5.87 -105.01 -0.62 -1.92 16 7 C -0.05 -0.56 6.05 -102.32 -0.62 -1.18 16 8 C -0.11 -0.66 9.60 36.01 0.35 -0.32 16 9 C -0.08 -1.06 9.68 -39.42 -0.38 -1.45 16 10 C 0.19 3.52 7.90 -155.68 -1.23 2.29 16 11 N -0.27 -5.84 12.27 31.30 0.38 -5.46 16 12 N -0.26 -6.28 11.58 30.69 0.36 -5.92 16 13 C 0.17 3.85 8.11 -88.26 -0.72 3.13 16 14 S -0.04 -0.82 19.17 -107.50 -2.06 -2.88 16 15 C 0.07 1.90 4.99 36.01 0.18 2.08 16 16 C -0.53 -14.75 9.13 -34.44 -0.31 -15.07 16 17 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 18 C 0.07 2.02 5.46 -17.81 -0.10 1.92 16 19 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 N -0.41 -7.81 3.02 -60.05 -0.18 -8.00 16 25 C 0.19 3.06 6.64 -83.79 -0.56 2.50 16 26 C -0.17 -2.58 9.48 -39.30 -0.37 -2.96 16 27 H 0.06 0.28 7.63 -51.93 -0.40 -0.11 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 30 H 0.14 0.78 6.25 -52.49 -0.33 0.45 16 31 H 0.14 0.74 6.47 -52.49 -0.34 0.40 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.33 6.57 -51.93 -0.34 -0.01 16 34 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.05 1.58 8.14 -51.91 -0.42 1.15 16 37 H 0.05 1.58 8.14 -51.91 -0.42 1.16 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.16 2.75 4.92 -43.26 -0.21 2.53 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -34.36 342.61 -9.29 -43.65 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.09 Total: -2.63 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.38 Total: -11.04 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 1.29 Total: -44.66 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.06 Total: -2.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.36 -9.29 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009221586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.629 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds