Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47055 * 270.00681 * 3 2 1 5 5 H 1.48495 * 109.46974 * 30.00201 * 3 2 1 6 6 H 1.48497 * 109.47049 * 150.00460 * 3 2 1 7 7 C 1.40053 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00093 * 359.97438 * 7 2 1 10 10 O 1.21697 * 119.99862 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00208 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00156 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47126 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.38272 * 119.93871 * 90.00503 * 14 13 12 16 16 C 1.38133 * 120.05744 * 179.97438 * 15 14 13 17 17 C 1.38756 * 119.94230 * 0.02562 * 16 15 14 18 18 O 1.35880 * 120.06011 * 180.02562 * 17 16 15 19 19 C 1.35924 * 118.00486 * 186.11481 * 18 17 16 20 20 C 1.38734 * 120.03519 * 247.17234 * 19 18 17 21 21 C 1.38150 * 119.96361 * 180.29656 * 20 19 18 22 22 C 1.38460 * 120.03565 * 359.97433 * 21 20 19 23 23 F 1.35094 * 119.96757 * 179.97438 * 22 21 20 24 24 C 1.38455 * 120.06165 * 0.02562 * 22 21 20 25 25 C 1.38139 * 120.03954 * 0.02562 * 24 22 21 26 26 C 1.38759 * 119.88517 * 0.26548 * 17 16 15 27 27 C 1.38136 * 119.93739 * 359.45683 * 26 17 16 28 28 H 0.97004 * 119.99921 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99562 * 0.02562 * 11 9 7 30 30 H 1.09004 * 109.46603 * 60.00615 * 12 11 9 31 31 H 1.08987 * 109.47322 * 300.00312 * 12 11 9 32 32 H 1.09007 * 109.46638 * 60.00331 * 13 12 11 33 33 H 1.08999 * 109.46968 * 300.00542 * 13 12 11 34 34 H 1.08006 * 119.97014 * 359.95627 * 15 14 13 35 35 H 1.08004 * 120.03128 * 179.97438 * 16 15 14 36 36 H 1.07991 * 120.01711 * 0.25021 * 20 19 18 37 37 H 1.08003 * 119.97635 * 179.97438 * 21 20 19 38 38 H 1.08010 * 119.98103 * 180.02562 * 24 22 21 39 39 H 1.08000 * 120.02067 * 179.97438 * 25 24 22 40 40 H 1.07996 * 120.03453 * 179.70112 * 26 17 16 41 41 H 1.08000 * 119.97167 * 180.26941 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.6999 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 0.0000 13 6 2.2106 -6.0794 -0.0007 14 6 1.4571 -7.3845 -0.0008 15 6 1.1116 -7.9818 -1.1990 16 6 0.4214 -9.1783 -1.2019 17 6 0.0743 -9.7805 -0.0010 18 8 -0.6043 -10.9578 -0.0011 19 6 -1.0338 -11.4469 1.1921 20 6 -0.4848 -12.6145 1.7021 21 6 -0.9268 -13.1137 2.9120 22 6 -1.9167 -12.4491 3.6160 23 9 -2.3482 -12.9387 4.7988 24 6 -2.4654 -11.2837 3.1082 25 6 -2.0264 -10.7826 1.8981 26 6 0.4169 -9.1760 1.2000 27 6 1.1122 -7.9823 1.1973 28 1 -0.4850 0.8401 0.0004 29 1 2.9189 -3.6477 -0.0002 30 1 0.5895 -4.9743 -0.8898 31 1 0.5901 -4.9740 0.8901 32 1 2.8380 -6.0216 0.8889 33 1 2.8367 -6.0216 -0.8912 34 1 1.3814 -7.5123 -2.1335 35 1 0.1514 -9.6443 -2.1381 36 1 0.2870 -13.1333 1.1531 37 1 -0.4999 -14.0229 3.3090 38 1 -3.2373 -10.7661 3.6586 39 1 -2.4549 -9.8738 1.5021 40 1 0.1437 -9.6401 2.1361 41 1 1.3829 -7.5135 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011883765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -68.710036 kcal Electronic energy + Delta-G solvation = -25526.214362 eV Core-core repulsion = 21478.795611 eV Total energy + Delta-G solvation = -4047.418751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.32995 -41.22952 -39.14320 -37.79107 -37.12618 -34.17273 -32.45977 -31.77978 -31.52942 -31.09570 -29.93554 -27.83810 -25.99678 -23.80925 -23.75266 -22.92471 -22.27638 -20.91125 -19.66578 -19.00466 -18.10749 -17.28113 -17.19834 -16.83851 -16.00254 -15.62919 -15.27177 -15.16609 -14.90409 -14.68293 -14.46688 -14.20591 -14.12195 -13.99365 -13.73051 -13.50101 -13.36734 -13.19336 -12.57540 -12.44087 -12.08184 -12.04576 -11.57522 -11.48041 -11.18529 -11.07866 -11.00429 -10.96712 -10.56233 -10.43970 -10.21519 -9.69848 -9.10548 -9.05825 -8.84459 -8.21037 -7.60125 -7.49205 -6.17623 -4.63212 0.43715 0.64917 1.23812 1.27934 2.64631 3.14420 3.19732 3.21109 3.24562 3.62123 3.75837 4.11253 4.22548 4.30367 4.60226 4.62587 4.68173 4.69326 4.75915 4.81801 4.98096 5.22592 5.24463 5.31410 5.34994 5.52946 5.57171 5.57996 5.60816 5.65054 5.79047 5.82038 5.90790 5.94871 6.14646 6.20531 6.26398 6.42845 6.60227 6.70915 6.72550 7.29385 7.44119 7.94290 8.10886 8.33757 9.03281 9.55104 10.61307 10.79997 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.001888 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.949905 B =14829.527616 C =15573.487797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.770 5.770 12 C 0.140 3.860 13 C -0.089 4.089 14 C -0.096 4.096 15 C -0.077 4.077 16 C -0.139 4.139 17 C 0.106 3.894 18 O -0.257 6.257 19 C 0.083 3.917 20 C -0.095 4.095 21 C -0.138 4.138 22 C 0.095 3.905 23 F -0.137 7.137 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.192 4.192 27 C -0.076 4.076 28 H 0.268 0.732 29 H 0.380 0.620 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -25.839 3.457 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.426 5.426 12 C 0.014 3.986 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.095 4.095 16 C -0.158 4.158 17 C 0.064 3.936 18 O -0.169 6.169 19 C 0.040 3.960 20 C -0.113 4.113 21 C -0.157 4.157 22 C 0.075 3.925 23 F -0.115 7.115 24 C -0.155 4.155 25 C -0.128 4.128 26 C -0.210 4.210 27 C -0.095 4.095 28 H 0.079 0.921 29 H 0.211 0.789 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.219 -25.854 3.336 26.069 hybrid contribution 0.726 0.700 0.384 1.080 sum 0.507 -25.154 3.720 25.432 Atomic orbital electron populations 1.70028 1.07061 1.27225 1.35417 1.25721 0.94622 1.00307 0.92652 0.86373 0.80133 0.81423 0.78810 1.19755 1.20479 1.18927 1.20890 0.93569 0.89421 1.54426 0.91427 1.18227 0.87218 0.82469 0.76340 1.90603 1.14127 1.86894 1.54802 1.46154 1.08539 1.04965 1.82894 1.20822 0.93672 0.83210 1.00862 1.20813 0.97709 0.91042 1.03148 1.19836 1.00148 0.96799 0.92904 1.20937 0.96558 0.93767 0.98273 1.20386 1.02927 0.96550 0.95916 1.19077 0.94529 0.85352 0.94653 1.84366 1.68651 1.36186 1.27718 1.18694 0.95525 0.95036 0.86758 1.21029 0.99439 0.96404 0.94470 1.21038 0.97812 1.01550 0.95265 1.17748 0.97014 0.94651 0.83057 1.91522 1.88629 1.87306 1.44051 1.21079 1.01898 0.95677 0.96811 1.21437 0.96237 1.00883 0.94225 1.21242 1.04467 0.98532 0.96768 1.20905 0.96381 0.94000 0.98175 0.92129 0.78888 0.93327 0.93409 0.90719 0.90628 0.84884 0.85056 0.83906 0.83840 0.83835 0.83909 0.85607 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.23 11.83 55.55 0.66 -22.58 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 3 Si 0.91 20.14 29.56 -169.99 -5.02 15.12 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.55 -15.47 9.54 -35.63 -0.34 -15.81 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.88 7.75 -12.99 -0.10 15.78 16 10 O -0.58 -19.11 15.02 5.19 0.08 -19.03 16 11 N -0.77 -17.09 5.55 -61.72 -0.34 -17.43 16 12 C 0.14 2.64 5.66 -4.04 -0.02 2.62 16 13 C -0.09 -1.21 5.46 -27.88 -0.15 -1.36 16 14 C -0.10 -1.22 5.14 -104.60 -0.54 -1.76 16 15 C -0.08 -0.91 9.69 -39.61 -0.38 -1.29 16 16 C -0.14 -1.57 9.99 -39.43 -0.39 -1.97 16 17 C 0.11 1.23 6.54 -39.20 -0.26 0.97 16 18 O -0.26 -2.84 10.00 -3.63 -0.04 -2.88 16 19 C 0.08 0.78 4.73 -39.21 -0.19 0.59 16 20 C -0.10 -0.73 9.99 -39.43 -0.39 -1.12 16 21 C -0.14 -0.97 10.02 -39.53 -0.40 -1.37 16 22 C 0.09 0.78 7.30 -39.42 -0.29 0.49 16 23 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 24 C -0.14 -1.07 10.02 -39.54 -0.40 -1.47 16 25 C -0.11 -0.96 8.34 -39.43 -0.33 -1.29 16 26 C -0.19 -2.18 8.80 -39.43 -0.35 -2.53 16 27 C -0.08 -0.92 9.69 -39.61 -0.38 -1.31 16 28 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 29 H 0.38 7.25 8.45 -40.82 -0.35 6.91 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.98 8.14 -51.94 -0.42 0.56 16 32 H 0.07 0.93 8.09 -51.92 -0.42 0.51 16 33 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.29 6.18 -52.49 -0.32 0.97 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -35.33 364.32 -9.00 -44.33 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.86 Total: 6.65 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -5.00 Total: -8.48 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.31 Total: -40.01 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.04 Total: -21.91 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.33 -9.00 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011883765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.381 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds