Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30171 * 126.80425 * 2 1 4 4 O 1.20920 * 111.60718 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56609 * 359.76722 * 4 3 2 6 6 C 1.50696 * 126.77911 * 180.28766 * 5 4 3 7 7 C 1.35455 * 106.44541 * 0.37543 * 5 4 3 8 8 S 1.76193 * 128.00574 * 179.91522 * 7 5 4 9 9 O 1.42105 * 106.40403 * 23.21997 * 8 7 5 10 10 O 1.42098 * 106.40145 * 156.13926 * 8 7 5 11 11 N 1.65606 * 107.21910 * 269.68108 * 8 7 5 12 12 C 1.47079 * 120.87580 * 269.72122 * 11 8 7 13 13 C 1.53700 * 108.27525 * 128.75650 * 12 11 8 14 14 N 1.46902 * 109.25768 * 54.07499 * 13 12 11 15 15 C 1.46899 * 111.00008 * 172.60756 * 14 13 12 16 16 C 1.50708 * 109.47358 * 294.30797 * 15 14 13 17 17 H 1.07998 * 119.99842 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99732 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00469 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99580 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47387 * 60.00138 * 20 18 16 22 22 H 1.48508 * 109.46973 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47448 * 299.99915 * 20 18 16 24 24 C 1.46896 * 111.27314 * 296.76200 * 14 13 12 25 25 C 1.47074 * 120.88105 * 90.00127 * 11 8 7 26 26 H 1.08997 * 109.46850 * 270.02651 * 1 2 3 27 27 H 1.08993 * 109.46801 * 30.02545 * 1 2 3 28 28 H 1.08997 * 109.46873 * 150.02778 * 1 2 3 29 29 H 1.09001 * 109.47123 * 270.10856 * 6 5 4 30 30 H 1.09004 * 109.46836 * 30.10351 * 6 5 4 31 31 H 1.09001 * 109.47606 * 150.10557 * 6 5 4 32 32 H 1.08998 * 109.63252 * 248.52047 * 12 11 8 33 33 H 1.08997 * 109.63613 * 9.10517 * 12 11 8 34 34 H 1.09003 * 109.64762 * 294.08090 * 13 12 11 35 35 H 1.09002 * 109.42355 * 173.94848 * 13 12 11 36 36 H 1.09002 * 109.47173 * 54.30805 * 15 14 13 37 37 H 1.08997 * 109.47100 * 174.30689 * 15 14 13 38 38 H 0.97002 * 120.00352 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.49012 * 303.14619 * 24 14 13 40 40 H 1.09000 * 109.49210 * 183.06197 * 24 14 13 41 41 H 1.09002 * 109.63203 * 350.89234 * 25 11 8 42 42 H 1.08996 * 109.63037 * 111.48465 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6069 0.0060 6 6 4.9021 -1.3696 0.0143 7 6 2.3539 -1.1321 0.0005 8 16 1.8923 -2.8325 0.0017 9 8 2.9933 -3.5469 0.5464 10 8 0.5812 -2.8919 0.5464 11 7 1.7636 -3.3066 -1.5798 12 6 0.4852 -3.1976 -2.2988 13 6 0.7378 -2.4568 -3.6216 14 7 1.8097 -3.1370 -4.3608 15 6 1.9641 -2.5683 -5.7064 16 6 0.7249 -2.8504 -6.5164 17 1 -0.0952 -3.3979 -6.0757 18 6 0.6381 -2.4097 -7.8198 19 7 1.6369 -1.7435 -8.3566 20 14 -0.8976 -2.7600 -8.8239 21 1 -2.0748 -2.1462 -8.1586 22 1 -0.7415 -2.1850 -10.1842 23 1 -1.0971 -4.2279 -8.9276 24 6 3.0783 -3.0923 -3.6216 25 6 2.9230 -3.8535 -2.3006 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 5.2209 -1.5556 -1.0113 30 1 5.6633 -0.7849 0.5309 31 1 4.7624 -2.3201 0.5294 32 1 0.0936 -4.1941 -2.5029 33 1 -0.2284 -2.6375 -1.6945 34 1 1.0346 -1.4285 -3.4149 35 1 -0.1742 -2.4595 -4.2185 36 1 2.1112 -1.4909 -5.6309 37 1 2.8278 -3.0196 -6.1947 38 1 1.5761 -1.4337 -9.2739 39 1 3.3423 -2.0551 -3.4148 40 1 3.8636 -3.5560 -4.2185 41 1 3.8222 -3.7272 -1.6975 42 1 2.7613 -4.9118 -2.5049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014140983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -2.785113 kcal Electronic energy + Delta-G solvation = -27654.506701 eV Core-core repulsion = 23765.310582 eV Total energy + Delta-G solvation = -3889.196119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.25833 -38.46711 -37.49667 -36.02524 -35.17093 -34.50642 -33.82949 -32.37889 -30.88042 -28.93377 -28.20149 -27.90432 -25.17055 -24.10257 -23.44297 -21.87095 -20.80642 -20.25751 -18.94544 -18.22118 -18.02614 -17.33699 -16.44643 -16.36852 -15.92800 -14.90143 -14.66664 -14.54953 -14.35310 -14.19400 -13.86713 -13.79526 -13.74121 -13.53303 -13.40553 -13.03677 -12.73448 -12.52471 -12.34843 -12.16259 -12.09649 -11.89953 -11.70656 -11.34560 -11.30590 -11.14141 -10.90819 -10.85061 -10.74786 -10.64176 -10.38811 -9.93183 -9.78842 -9.39186 -8.96308 -8.50531 -7.38962 -6.10051 -4.12237 0.21146 0.84259 1.66676 2.66859 2.90477 3.28942 3.33718 3.35992 3.56822 3.70953 4.01833 4.15780 4.35246 4.62522 4.67630 4.82506 4.85207 5.01914 5.12895 5.23976 5.27203 5.33986 5.34729 5.39575 5.49777 5.55670 5.63176 5.65531 5.70232 5.89013 5.94615 6.07789 6.21096 6.36693 6.42190 6.63213 7.16326 7.22304 7.69734 7.88171 7.96172 8.07066 8.42765 8.94795 9.52652 11.00695 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.003796 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.944985 B = 7374.581436 C = 7536.284925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.110 3.890 3 N -0.365 5.365 4 O 0.097 5.903 5 C 0.111 3.889 6 C -0.117 4.117 7 C -0.796 4.796 8 S 2.724 3.276 9 O -0.955 6.955 10 O -0.948 6.948 11 N -0.991 5.991 12 C 0.123 3.877 13 C 0.050 3.950 14 N -0.532 5.532 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.040 3.960 25 C 0.126 3.874 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.098 0.902 36 H -0.010 1.010 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.023 0.977 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -0.100 17.631 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 N -0.074 5.074 4 O 0.040 5.960 5 C 0.044 3.956 6 C -0.173 4.173 7 C -0.883 4.883 8 S 2.809 3.191 9 O -0.945 6.945 10 O -0.938 6.938 11 N -0.831 5.831 12 C -0.002 4.002 13 C -0.080 4.080 14 N -0.257 5.257 15 C 0.069 3.931 16 C -0.550 4.550 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.091 4.091 25 C 0.001 3.999 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.116 0.884 36 H 0.008 0.992 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.650 0.395 18.136 18.504 hybrid contribution -0.356 0.858 -1.025 1.383 sum 3.294 1.252 17.111 17.470 Atomic orbital electron populations 1.20478 0.84795 1.04879 1.04658 1.23112 0.98867 0.86016 0.97176 1.73827 0.88831 1.23546 1.21151 1.84852 1.22326 1.22511 1.66356 1.24560 0.97078 0.83955 0.89977 1.21112 0.89531 1.00601 1.06099 1.33129 1.00043 1.27179 1.27935 1.01168 0.73505 0.71942 0.72466 1.93522 1.54829 1.69601 1.76594 1.93567 1.37763 1.86230 1.76286 1.57701 1.18149 1.76364 1.30911 1.21862 0.82649 1.02510 0.93136 1.22425 0.98135 0.94108 0.93305 1.62005 1.03210 1.56406 1.04045 1.19727 0.98179 0.92619 0.82538 1.21098 1.01830 1.35266 0.96762 0.91774 1.24986 0.96605 0.95134 0.97779 1.69941 1.31306 1.37861 1.14631 0.86552 0.83057 0.78675 0.79061 1.20247 1.21383 1.20095 1.22412 0.94501 0.97868 0.94283 1.21655 0.86199 0.99182 0.92831 0.88890 0.89593 0.88930 0.87522 0.88359 0.85635 0.89683 0.89768 0.95897 0.88387 0.99240 0.95011 0.92799 0.95849 0.89920 0.89795 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.78 36.01 0.35 -0.68 16 2 C 0.11 1.51 7.32 -82.10 -0.60 0.91 16 3 N -0.36 -5.34 12.07 33.42 0.40 -4.94 16 4 O 0.10 1.29 11.20 17.17 0.19 1.48 16 5 C 0.11 1.29 7.48 -35.30 -0.26 1.03 16 6 C -0.12 -0.90 10.19 36.00 0.37 -0.54 16 7 C -0.80 -10.34 6.37 -39.38 -0.25 -10.59 16 8 S 2.72 35.43 5.82 -107.50 -0.63 34.81 16 9 O -0.96 -12.82 14.41 -57.17 -0.82 -13.65 16 10 O -0.95 -13.83 15.18 -57.17 -0.87 -14.70 16 11 N -0.99 -13.08 3.32 -112.97 -0.38 -13.46 16 12 C 0.12 1.72 6.56 -3.36 -0.02 1.69 16 13 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 14 N -0.53 -10.38 4.62 -235.45 -1.09 -11.47 16 15 C 0.19 4.76 4.72 -4.97 -0.02 4.73 16 16 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 17 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.90 13.29 55.43 0.74 -25.17 16 20 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 25 C 0.13 1.60 6.53 -3.60 -0.02 1.57 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.01 6.17 -51.93 -0.32 0.69 16 29 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.13 1.02 5.91 -51.93 -0.31 0.71 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.02 6.13 -51.93 -0.32 0.70 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 36 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 37 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 41 H 0.08 0.84 7.22 -51.93 -0.37 0.47 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -32.65 351.43 -8.87 -41.52 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.81 Total: -2.80 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.89 Total: -12.83 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.32 Total: -55.03 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.50 Total: -26.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 35.43 SS G_CDS: -0.63 Total: 34.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.65 -8.87 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014140983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.736 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds