Wall clock time and date at job start Tue Mar 31 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.34179 * 125.67755 * 80.55383 * 3 2 1 5 5 C 1.30517 * 109.80140 * 179.97438 * 4 3 2 6 6 N 1.34705 * 108.34421 * 359.97438 * 5 4 3 7 7 C 1.46499 * 126.73233 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47092 * 125.00417 * 7 6 5 9 9 O 1.21290 * 119.99923 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99892 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99804 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46908 * 89.99866 * 11 10 8 13 13 H 1.08001 * 120.00560 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99943 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99760 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99895 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47036 * 90.00649 * 16 14 12 18 18 H 1.48503 * 109.47441 * 210.00210 * 16 14 12 19 19 H 1.48503 * 109.47543 * 330.00449 * 16 14 12 20 20 C 1.40039 * 120.00137 * 359.97438 * 10 8 7 21 21 C 1.38811 * 120.08071 * 90.00668 * 20 10 8 22 22 C 1.38137 * 119.96025 * 179.97438 * 21 20 10 23 23 C 1.38280 * 120.11029 * 0.02562 * 22 21 20 24 24 C 1.38272 * 120.15441 * 359.97438 * 23 22 21 25 25 C 1.38305 * 120.04765 * 359.74481 * 24 23 22 26 26 F 1.35101 * 120.05784 * 180.28295 * 25 24 23 27 27 N 1.31723 * 125.67021 * 260.24506 * 3 2 1 28 28 H 1.07997 * 125.82812 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47431 * 245.01104 * 7 6 5 30 30 H 1.09005 * 109.47273 * 5.00324 * 7 6 5 31 31 H 1.08994 * 109.47134 * 209.99721 * 11 10 8 32 32 H 1.08999 * 109.47058 * 330.00261 * 11 10 8 33 33 H 0.97003 * 119.99944 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.01542 * 359.95083 * 21 20 10 35 35 H 1.07996 * 119.94778 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.92636 * 179.97438 * 23 22 21 37 37 H 1.08011 * 119.97352 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3506 -0.1779 -1.0752 5 6 4.6060 -0.1182 -0.7231 6 7 4.6639 0.1036 0.6043 7 6 5.8746 0.2409 1.4177 8 6 5.8295 1.5463 2.1693 9 8 4.8797 2.2892 2.0379 10 7 6.8450 1.8888 2.9865 11 6 6.8014 3.1582 3.7167 12 6 6.1323 2.9477 5.0505 13 1 5.7756 1.9664 5.3269 14 6 5.9754 4.0078 5.9180 15 7 5.3919 3.8239 7.0823 16 14 6.5930 5.7047 5.4404 17 1 5.5146 6.4437 4.7359 18 1 6.9870 6.4504 6.6627 19 1 7.7682 5.5694 4.5428 20 6 7.9418 1.0314 3.1377 21 6 9.0398 1.1514 2.2969 22 6 10.1206 0.3046 2.4486 23 6 10.1106 -0.6630 3.4364 24 6 9.0193 -0.7866 4.2765 25 6 7.9361 0.0615 4.1341 26 9 6.8722 -0.0554 4.9585 27 7 3.3360 0.1823 1.0546 28 1 5.4536 -0.2271 -1.3834 29 1 5.9315 -0.5849 2.1269 30 1 6.7512 0.2246 0.7701 31 1 7.8167 3.5225 3.8730 32 1 6.2375 3.8905 3.1389 33 1 5.2813 4.5698 7.6925 34 1 9.0488 1.9061 1.5244 35 1 10.9746 0.3979 1.7941 36 1 10.9570 -1.3237 3.5521 37 1 9.0147 -1.5432 5.0474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014143309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:59 Heat of formation + Delta-G solvation = 102.361626 kcal Electronic energy + Delta-G solvation = -27304.400108 eV Core-core repulsion = 23193.151989 eV Total energy + Delta-G solvation = -4111.248119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.53704 -42.41477 -40.09391 -38.47697 -36.72384 -35.35126 -34.21687 -32.68071 -31.70239 -30.73939 -29.94091 -29.20533 -27.32342 -24.35161 -23.18577 -22.89709 -22.60271 -22.00933 -19.55460 -18.89384 -17.86671 -17.21009 -17.11646 -16.91155 -16.14445 -15.91396 -15.61867 -15.31582 -15.08918 -14.90873 -14.87123 -14.16216 -14.07618 -13.68086 -13.43641 -13.20188 -13.14481 -12.99203 -12.76572 -12.47923 -12.31418 -12.14251 -12.08896 -11.82117 -11.45625 -11.04928 -10.67509 -10.41452 -10.36243 -10.27852 -10.06802 -9.65567 -9.53267 -9.02184 -8.65992 -8.57989 -8.27459 -6.13156 -4.13575 0.97977 1.03087 1.11191 1.71954 1.98125 2.40277 2.72640 3.12427 3.22862 3.27143 3.30105 3.37017 3.42867 3.43782 4.16801 4.28261 4.32412 4.36240 4.45162 4.72020 4.80638 4.84118 5.02418 5.11781 5.18137 5.24083 5.54798 5.59003 5.84242 5.93803 6.02489 6.17390 6.23166 6.32377 6.46067 6.68051 6.71731 6.97256 7.20067 7.47610 7.61219 7.79735 8.32689 8.49477 8.94815 9.44417 10.99802 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.004837 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.926601 B = 5787.432976 C = 7710.808500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C 0.317 3.683 3 C 0.283 3.717 4 N -0.511 5.511 5 C 0.269 3.731 6 N -0.351 5.351 7 C 0.107 3.893 8 C 0.505 3.495 9 O -0.493 6.493 10 N -0.549 5.549 11 C 0.221 3.779 12 C -0.536 4.536 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.891 5.891 16 Si 0.871 3.129 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.097 3.903 21 C -0.094 4.094 22 C -0.130 4.130 23 C -0.089 4.089 24 C -0.155 4.155 25 C 0.120 3.880 26 F -0.114 7.114 27 N -0.214 5.214 28 H 0.233 0.767 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.417 -11.567 -14.023 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.003 4.003 3 C 0.001 3.999 4 N -0.238 5.238 5 C -0.028 4.028 6 N -0.143 5.143 7 C -0.018 4.018 8 C 0.290 3.710 9 O -0.366 6.366 10 N -0.279 5.279 11 C 0.103 3.897 12 C -0.574 4.574 13 H 0.104 0.896 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.698 3.302 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.191 1.191 20 C 0.005 3.995 21 C -0.114 4.114 22 C -0.148 4.148 23 C -0.107 4.107 24 C -0.174 4.174 25 C 0.099 3.901 26 F -0.092 7.092 27 N -0.046 5.046 28 H 0.249 0.751 29 H 0.139 0.861 30 H 0.152 0.848 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.737 -10.935 -13.448 20.389 hybrid contribution 1.047 1.026 0.316 1.499 sum 11.783 -9.909 -13.132 20.236 Atomic orbital electron populations 1.81272 1.10353 1.07060 1.06218 1.22873 0.89060 0.94269 0.94108 1.18147 0.88632 1.04756 0.88353 1.70508 1.00365 1.24245 1.28716 1.26141 0.96600 0.96197 0.83848 1.50124 1.05122 1.51512 1.07531 1.21860 0.83433 0.99925 0.96613 1.20045 0.83113 0.87243 0.80645 1.90813 1.30985 1.51578 1.63179 1.45441 1.16844 1.21209 1.44443 1.19878 0.97778 0.79392 0.92693 1.21363 1.38962 0.98557 0.98522 0.89614 1.24813 0.94580 0.98506 0.94738 1.69888 1.42610 1.31900 1.08494 0.86945 0.79763 0.85142 0.78386 1.19845 1.20904 1.19137 1.17798 0.91095 0.93383 0.97267 1.21340 0.92022 0.99035 0.98974 1.21045 0.98348 0.96083 0.99358 1.21038 0.97348 0.98010 0.94346 1.21177 0.93267 1.00854 1.02092 1.18200 0.85737 0.96259 0.89895 1.91629 1.53405 1.94741 1.69407 1.78797 0.87005 1.18831 1.19926 0.75121 0.86139 0.84761 0.94780 0.93903 0.92468 0.84741 0.85102 0.85018 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -6.02 18.54 41.83 0.78 -5.25 16 2 C 0.32 4.92 16.01 -22.47 -0.36 4.56 16 3 C 0.28 4.31 7.82 -158.51 -1.24 3.07 16 4 N -0.51 -6.57 11.21 -13.78 -0.15 -6.73 16 5 C 0.27 2.56 12.61 -90.67 -1.14 1.41 16 6 N -0.35 -4.49 3.42 -63.82 -0.22 -4.71 16 7 C 0.11 1.23 5.84 -5.20 -0.03 1.20 16 8 C 0.51 8.99 7.68 -10.99 -0.08 8.91 16 9 O -0.49 -11.21 15.31 5.55 0.08 -11.13 16 10 N -0.55 -10.08 2.33 -114.67 -0.27 -10.35 16 11 C 0.22 5.07 4.22 -5.19 -0.02 5.05 16 12 C -0.54 -14.93 9.89 -34.44 -0.34 -15.27 16 13 H 0.09 2.64 6.65 -52.49 -0.35 2.29 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -27.30 13.96 55.43 0.77 -26.53 16 16 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 20 C 0.10 1.39 3.93 -83.59 -0.33 1.06 16 21 C -0.09 -0.95 9.97 -39.41 -0.39 -1.35 16 22 C -0.13 -1.00 10.04 -39.60 -0.40 -1.40 16 23 C -0.09 -0.71 10.04 -39.55 -0.40 -1.11 16 24 C -0.15 -1.66 10.02 -39.54 -0.40 -2.06 16 25 C 0.12 1.78 7.31 -39.25 -0.29 1.49 16 26 F -0.11 -2.19 15.65 2.25 0.04 -2.15 16 27 N -0.21 -3.60 11.85 30.96 0.37 -3.23 16 28 H 0.23 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.12 1.29 8.10 -51.93 -0.42 0.87 16 30 H 0.13 0.82 8.04 -51.93 -0.42 0.40 16 31 H 0.03 0.75 7.11 -51.93 -0.37 0.38 16 32 H 0.04 1.04 6.85 -51.93 -0.36 0.69 16 33 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 34 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -38.04 346.65 -6.76 -44.80 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -3.19 Total: -4.01 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -5.52 Total: 7.68 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 1.28 Total: -56.80 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.04 -6.76 -44.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014143309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.158 kcal (2) G-P(sol) polarization free energy of solvation -38.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds