Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47542 * 2 1 4 4 O 1.42897 * 109.46574 * 120.00024 * 2 1 3 5 5 C 1.35946 * 117.00166 * 275.83791 * 4 2 1 6 6 C 1.38712 * 120.02810 * 5.59371 * 5 4 2 7 7 C 1.38143 * 119.96997 * 179.97438 * 6 5 4 8 8 C 1.38453 * 120.03593 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.97390 * 179.97438 * 8 7 6 10 10 C 1.38453 * 120.05547 * 0.25396 * 8 7 6 11 11 C 1.38160 * 120.02953 * 359.49446 * 10 8 7 12 12 C 1.50695 * 109.46968 * 239.99286 * 2 1 3 13 13 O 1.21286 * 120.00715 * 245.00386 * 12 2 1 14 14 N 1.34784 * 119.99800 * 65.00666 * 12 2 1 15 15 C 1.39243 * 120.00193 * 185.23839 * 14 12 2 16 16 C 1.39471 * 119.83500 * 212.52489 * 15 14 12 17 17 C 1.36379 * 120.16704 * 179.71988 * 16 15 14 18 18 C 1.40869 * 119.82736 * 0.57146 * 17 16 15 19 19 C 1.41147 * 120.16155 * 179.67786 * 18 17 16 20 20 H 1.08007 * 119.99970 * 205.51007 * 19 18 17 21 21 C 1.39898 * 120.00264 * 25.50876 * 19 18 17 22 22 N 1.30875 * 119.99980 * 15.63128 * 21 19 18 23 23 Si 1.86803 * 120.00227 * 195.63434 * 21 19 18 24 24 H 1.48502 * 109.47140 * 59.99780 * 23 21 19 25 25 H 1.48505 * 109.47149 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47112 * 300.00002 * 23 21 19 27 27 C 1.40866 * 119.67400 * 359.70398 * 18 17 16 28 28 C 1.36377 * 119.82829 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.47438 * 300.00550 * 1 2 3 30 30 H 1.09005 * 109.46883 * 59.99804 * 1 2 3 31 31 H 1.08999 * 109.47542 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.01335 * 359.97438 * 6 5 4 33 33 H 1.08004 * 119.98778 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.98903 * 179.72532 * 10 8 7 35 35 H 1.08000 * 120.01175 * 180.23256 * 11 10 8 36 36 H 0.96997 * 119.99709 * 5.23681 * 14 12 2 37 37 H 1.08003 * 119.91661 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.08350 * 180.25486 * 17 16 15 39 39 H 0.97000 * 119.99810 * 179.97438 * 22 21 19 40 40 H 1.08001 * 120.08805 * 179.97438 * 27 18 17 41 41 H 1.07996 * 119.91685 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.0957 0.0584 2.3088 6 6 1.6247 1.3628 2.3359 7 6 1.7158 2.1054 3.4972 8 6 2.2764 1.5482 4.6339 9 9 2.3653 2.2758 5.7687 10 6 2.7512 0.2480 4.6070 11 6 2.6567 -0.4988 3.4484 12 6 2.0323 -0.7105 -1.2303 13 8 2.6529 -1.7469 -1.1214 14 7 1.7919 -0.1943 -2.4520 15 6 2.1594 -0.9039 -3.5923 16 6 2.5596 -0.2167 -4.7382 17 6 2.9264 -0.9050 -5.8569 18 6 2.8889 -2.3132 -5.8571 19 6 3.2605 -3.0324 -7.0133 20 1 2.8661 -4.0234 -7.1829 21 6 4.1398 -2.4616 -7.9397 22 7 4.8522 -1.4153 -7.6071 23 14 4.2971 -3.1927 -9.6515 24 1 2.9784 -3.1462 -10.3327 25 1 5.2873 -2.4108 -10.4347 26 1 4.7511 -4.6028 -9.5477 27 6 2.4781 -3.0000 -4.6978 28 6 2.1205 -2.2982 -3.5845 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1869 1.7977 1.4494 33 1 1.3495 3.1213 3.5185 34 1 3.1924 -0.1841 5.4930 35 1 3.0237 -1.5143 3.4288 36 1 1.3628 0.6715 -2.5368 37 1 2.5837 0.8630 -4.7379 38 1 3.2399 -0.3716 -6.7422 39 1 5.4621 -1.0198 -8.2493 40 1 2.4465 -4.0795 -4.6906 41 1 1.8050 -2.8232 -2.6951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015030218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -83.911172 kcal Electronic energy + Delta-G solvation = -26158.452274 eV Core-core repulsion = 22110.374353 eV Total energy + Delta-G solvation = -4048.077922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.82329 -41.84081 -40.78090 -39.15223 -38.12598 -36.22754 -34.90615 -33.24629 -32.05184 -31.46699 -30.67806 -30.21209 -27.13735 -25.56684 -24.32844 -23.62585 -23.11609 -22.40978 -21.10012 -19.53026 -19.30138 -18.90303 -18.34234 -17.75323 -17.23657 -17.01378 -16.87077 -16.52389 -16.04359 -15.74558 -15.70778 -15.50923 -14.87686 -14.79076 -14.52052 -14.31526 -14.15503 -14.00225 -13.77733 -13.66971 -13.41343 -13.22812 -13.16906 -12.87695 -12.77440 -12.74828 -12.46466 -11.99481 -11.84660 -11.72966 -11.45050 -11.19119 -10.84450 -10.62294 -10.19632 -9.48616 -9.15470 -8.86704 -8.60808 -6.29207 0.13693 0.17092 0.75424 1.12654 1.39074 1.42910 1.51568 1.56797 1.73495 2.21767 2.54397 2.59264 2.74645 3.31351 3.49131 3.68021 3.71792 3.73736 3.82469 3.89160 4.13606 4.29633 4.38599 4.46605 4.48480 4.65880 4.70833 4.89334 4.91468 5.07351 5.09440 5.12296 5.12915 5.14715 5.21308 5.28873 5.40881 5.64244 5.67043 5.86490 6.00231 6.07795 6.27458 6.36063 6.63220 6.67397 6.92059 6.97081 7.31126 8.32599 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.001971 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.918385 B =14205.470960 C =14236.243663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.132 0.868 4 O -0.310 6.310 5 C 0.107 3.893 6 C -0.180 4.180 7 C -0.107 4.107 8 C 0.041 3.959 9 F -0.148 7.148 10 C -0.110 4.110 11 C -0.136 4.136 12 C 0.498 3.502 13 O -0.563 6.563 14 N -0.631 5.631 15 C 0.008 3.992 16 C -0.108 4.108 17 C -0.171 4.171 18 C 0.074 3.926 19 C -0.494 4.494 20 H 0.074 0.926 21 C 0.034 3.966 22 N -0.824 5.824 23 Si 0.985 3.015 24 H -0.258 1.258 25 H -0.266 1.266 26 H -0.264 1.264 27 C -0.235 4.235 28 C -0.089 4.089 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.421 0.579 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.290 0.710 40 H 0.092 0.908 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 11.268 17.100 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.017 3.983 3 H 0.150 0.850 4 O -0.224 6.224 5 C 0.061 3.939 6 C -0.198 4.198 7 C -0.125 4.125 8 C 0.022 3.978 9 F -0.127 7.127 10 C -0.129 4.129 11 C -0.155 4.155 12 C 0.285 3.715 13 O -0.441 6.441 14 N -0.278 5.278 15 C -0.085 4.085 16 C -0.128 4.128 17 C -0.191 4.191 18 C 0.071 3.929 19 C -0.524 4.524 20 H 0.092 0.908 21 C -0.181 4.181 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.188 1.188 27 C -0.255 4.255 28 C -0.109 4.109 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.259 0.741 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.607 10.530 17.143 21.509 hybrid contribution 0.269 -0.152 -0.592 0.667 sum -7.338 10.379 16.551 20.869 Atomic orbital electron populations 1.22385 0.90050 1.04283 1.06125 1.22298 0.97277 0.97227 0.81506 0.85033 1.86221 1.81423 1.38473 1.16261 1.19358 0.96560 0.91442 0.86505 1.21433 1.04831 0.92997 1.00581 1.21216 0.98781 1.01832 0.90715 1.17821 1.05348 0.91149 0.83506 1.91475 1.94757 1.77298 1.49174 1.21133 0.99998 0.92547 0.99221 1.20477 1.02469 1.01911 0.90608 1.20893 0.79571 0.85882 0.85132 1.90732 1.40753 1.25877 1.86763 1.42670 1.59495 1.22738 1.02851 1.17157 1.12823 0.90581 0.87963 1.20490 1.00418 0.99114 0.92788 1.20961 1.05477 0.94101 0.98555 1.18003 0.89627 0.93103 0.92122 1.19773 1.24958 1.02864 1.04764 0.90782 1.26766 0.92753 0.94660 1.03937 1.69865 1.17954 1.20075 1.37082 0.85211 0.79249 0.79026 0.75963 1.18212 1.19011 1.18811 1.20782 1.12584 0.98057 0.94058 1.20367 1.00244 0.93405 0.96850 0.88252 0.87641 0.92379 0.81567 0.81921 0.82367 0.84092 0.74057 0.85302 0.86866 0.89970 0.88969 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.10 71.98 0.66 -1.85 16 2 C 0.08 1.61 2.64 29.85 0.08 1.69 16 3 H 0.13 1.81 6.37 -2.39 -0.02 1.80 16 4 O -0.31 -8.17 9.34 -73.95 -0.69 -8.87 16 5 C 0.11 2.21 6.59 22.49 0.15 2.36 16 6 C -0.18 -2.62 8.20 22.36 0.18 -2.44 16 7 C -0.11 -1.48 10.02 22.30 0.22 -1.26 16 8 C 0.04 0.70 7.30 22.37 0.16 0.86 16 9 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 10 C -0.11 -1.84 10.02 22.30 0.22 -1.61 16 11 C -0.14 -2.68 9.99 22.36 0.22 -2.45 16 12 C 0.50 16.21 6.91 87.65 0.61 16.82 16 13 O -0.56 -25.13 14.12 15.94 0.23 -24.91 16 14 N -0.63 -19.38 5.27 -303.10 -1.60 -20.98 16 15 C 0.01 0.34 6.30 38.56 0.24 0.58 16 16 C -0.11 -4.66 9.89 22.13 0.22 -4.44 16 17 C -0.17 -8.73 8.63 22.48 0.19 -8.53 16 18 C 0.07 4.06 5.57 -21.28 -0.12 3.94 16 19 C -0.49 -26.90 9.04 23.39 0.21 -26.69 16 20 H 0.07 3.91 7.89 -2.91 -0.02 3.88 16 21 C 0.03 1.69 5.18 85.24 0.44 2.13 16 22 N -0.82 -42.55 10.88 21.82 0.24 -42.31 16 23 Si 0.98 37.90 29.59 68.60 2.03 39.93 16 24 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 27 C -0.23 -12.32 9.74 22.48 0.22 -12.11 16 28 C -0.09 -4.29 8.58 22.14 0.19 -4.10 16 29 H 0.10 0.99 6.81 -2.39 -0.02 0.98 16 30 H 0.10 1.05 8.11 -2.38 -0.02 1.03 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.17 1.44 5.39 -2.91 -0.02 1.42 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.42 8.55 8.77 -92.71 -0.81 7.74 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.11 5.94 6.14 -2.91 -0.02 5.92 16 39 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 40 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.10 4.83 6.35 -2.91 -0.02 4.81 16 Total: -1.00 -72.11 354.05 5.36 -66.76 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.28 Total: 29.44 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 4.10 Total: -37.10 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -1.36 Total: -63.29 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.47 Total: -33.77 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -72.11 5.36 -66.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015030218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.156 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds