Wall clock time and date at job start Tue Mar 31 2020 07:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47393 * 2 1 4 4 O 1.42899 * 109.46977 * 239.99934 * 2 1 3 5 5 C 1.35946 * 116.99835 * 84.15618 * 4 2 1 6 6 C 1.38709 * 120.02805 * 174.13685 * 5 4 2 7 7 C 1.38149 * 119.96799 * 179.79288 * 6 5 4 8 8 C 1.38460 * 120.03187 * 0.48181 * 7 6 5 9 9 F 1.35101 * 119.97338 * 179.72254 * 8 7 6 10 10 C 1.38456 * 120.05538 * 359.75224 * 8 7 6 11 11 C 1.38152 * 120.03250 * 0.02562 * 10 8 7 12 12 C 1.50696 * 109.46893 * 120.00309 * 2 1 3 13 13 O 1.21289 * 120.00281 * 114.99654 * 12 2 1 14 14 N 1.34784 * 120.00097 * 294.99535 * 12 2 1 15 15 C 1.39238 * 119.99779 * 185.23779 * 14 12 2 16 16 C 1.39478 * 119.82994 * 212.52807 * 15 14 12 17 17 C 1.36384 * 120.16828 * 179.76612 * 16 15 14 18 18 C 1.40866 * 119.82471 * 0.51419 * 17 16 15 19 19 C 1.41153 * 120.16437 * 179.71778 * 18 17 16 20 20 H 1.07999 * 120.00231 * 205.50880 * 19 18 17 21 21 C 1.39910 * 119.99715 * 25.51278 * 19 18 17 22 22 N 1.30873 * 120.00213 * 15.64006 * 21 19 18 23 23 Si 1.86797 * 119.99807 * 195.64423 * 21 19 18 24 24 H 1.48499 * 109.47078 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47493 * 119.99747 * 23 21 19 26 26 H 1.48500 * 109.46760 * 239.99807 * 23 21 19 27 27 C 1.40876 * 119.67498 * 359.74145 * 18 17 16 28 28 C 1.36375 * 119.82592 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47190 * 299.99816 * 1 2 3 30 30 H 1.08995 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47073 * 59.99787 * 1 2 3 32 32 H 1.07995 * 120.01877 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.98771 * 180.21243 * 7 6 5 34 34 H 1.08004 * 119.98219 * 179.97438 * 10 8 7 35 35 H 1.07996 * 120.01352 * 179.97438 * 11 10 8 36 36 H 0.96992 * 119.99484 * 5.24515 * 14 12 2 37 37 H 1.08001 * 119.91642 * 0.02686 * 16 15 14 38 38 H 1.07997 * 120.08726 * 180.25570 * 17 16 15 39 39 H 0.96991 * 120.00136 * 180.02562 * 22 21 19 40 40 H 1.07994 * 120.08502 * 179.97438 * 27 18 17 41 41 H 1.08001 * 119.91488 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0957 0.0584 -2.3088 6 6 2.6633 -0.4964 -3.4463 7 6 2.7497 0.2472 -4.6074 8 6 2.2791 1.5491 -4.6331 9 9 2.3692 2.2771 -5.7676 10 6 1.7167 2.1057 -3.4969 11 6 1.6249 1.3628 -2.3358 12 6 2.0323 -0.7105 1.2304 13 8 2.6529 -1.7468 1.1215 14 7 1.7919 -0.1942 2.4520 15 6 2.3476 -0.7900 3.5812 16 6 1.6547 -0.7641 4.7914 17 6 2.1904 -1.3496 5.9006 18 6 3.4517 -1.9721 5.8242 19 6 4.0156 -2.5751 6.9692 20 1 5.0873 -2.6792 7.0523 21 6 3.1860 -3.0380 7.9963 22 7 1.9050 -3.1977 7.7811 23 14 3.9068 -3.4278 9.6749 24 1 5.3683 -3.1656 9.6591 25 1 3.2609 -2.5716 10.7020 26 1 3.6641 -4.8568 9.9979 27 6 4.1479 -1.9895 4.5996 28 6 3.5972 -1.4040 3.4979 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 3.0341 -1.5105 -3.4255 33 1 3.1884 -0.1857 -5.4943 34 1 1.3504 3.1215 -3.5182 35 1 1.1866 1.7974 -1.4496 36 1 1.2317 0.5922 2.5445 37 1 0.6896 -0.2828 4.8493 38 1 1.6509 -1.3324 6.8360 39 1 1.3298 -3.5182 8.4932 40 1 5.1155 -2.4645 4.5337 41 1 4.1299 -1.4161 2.5585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015030219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:46 Heat of formation + Delta-G solvation = -67.077241 kcal Electronic energy + Delta-G solvation = -26160.010649 eV Core-core repulsion = 22112.662702 eV Total energy + Delta-G solvation = -4047.347948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -49.07818 -40.80513 -39.51649 -37.72427 -36.94679 -34.55224 -33.27241 -32.24076 -31.27888 -29.65060 -29.49036 -28.85812 -25.57161 -24.45521 -23.49112 -22.53593 -21.55197 -20.81072 -19.68342 -18.71160 -17.78224 -17.55308 -17.32018 -16.39998 -16.12945 -15.96873 -15.67160 -15.25828 -14.97144 -14.69970 -14.40219 -14.05242 -13.94360 -13.56441 -13.44787 -13.13030 -12.96905 -12.78646 -12.49209 -12.48118 -12.13636 -11.95625 -11.85141 -11.42191 -11.20673 -11.18252 -11.08640 -10.99722 -10.77664 -10.03145 -9.66162 -9.53078 -9.44367 -9.18042 -8.97713 -8.37202 -7.60385 -7.04098 -6.78636 -4.35534 0.81764 0.90800 2.41459 2.59336 2.90784 3.03679 3.05518 3.10446 3.24613 3.29241 3.71715 3.89649 4.01305 4.32956 4.39897 4.51307 4.56548 4.70696 4.79525 4.80122 4.98238 5.13782 5.33359 5.37714 5.55095 5.64620 5.75647 5.82363 5.84061 5.92180 6.12952 6.35994 6.37417 6.67953 6.82928 6.98877 7.06827 7.11994 7.22656 7.53814 7.64034 7.81357 7.98132 8.18139 8.22573 8.53012 8.63310 8.83471 8.93022 10.13251 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.040214 B = 0.001978 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.111824 B =14152.636798 C =14447.177167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.097 0.903 4 O -0.278 6.278 5 C 0.128 3.872 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.053 3.947 9 F -0.143 7.143 10 C -0.111 4.111 11 C -0.187 4.187 12 C 0.500 3.500 13 O -0.506 6.506 14 N -0.643 5.643 15 C -0.010 4.010 16 C -0.111 4.111 17 C -0.153 4.153 18 C 0.105 3.895 19 C -0.455 4.455 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.793 5.793 23 Si 0.910 3.090 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.214 4.214 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.395 0.605 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.280 0.720 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 10.385 -16.641 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 H 0.114 0.886 4 O -0.190 6.190 5 C 0.082 3.918 6 C -0.140 4.140 7 C -0.130 4.130 8 C 0.034 3.966 9 F -0.122 7.122 10 C -0.130 4.130 11 C -0.205 4.205 12 C 0.285 3.715 13 O -0.380 6.380 14 N -0.287 5.287 15 C -0.102 4.102 16 C -0.132 4.132 17 C -0.173 4.173 18 C 0.102 3.898 19 C -0.484 4.484 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.418 5.418 23 Si 0.734 3.266 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.235 4.235 28 C -0.096 4.096 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.106 9.362 -16.629 19.520 hybrid contribution -0.245 0.483 0.637 0.836 sum -4.351 9.844 -15.992 19.277 Atomic orbital electron populations 1.22358 0.92670 1.04770 1.03673 1.22279 0.95743 0.96905 0.84340 0.88570 1.86272 1.80573 1.36947 1.15252 1.19133 0.95144 0.90388 0.87176 1.20349 1.01864 1.01677 0.90114 1.20970 1.00455 0.92603 0.98993 1.17579 1.04954 0.90880 0.83209 1.91487 1.94669 1.77192 1.48858 1.20924 0.99759 1.00821 0.91498 1.21205 1.05675 0.94116 0.99526 1.19889 0.81964 0.85742 0.83921 1.90750 1.39313 1.22131 1.85844 1.42816 1.50668 1.30456 1.04778 1.17113 0.95668 1.11724 0.85657 1.20202 0.97650 1.02432 0.92881 1.20932 0.98292 1.00495 0.97536 1.17694 0.91624 0.88828 0.91605 1.19618 0.94784 1.33333 1.00655 0.90260 1.25947 0.94578 0.93342 1.00624 1.69837 1.05325 1.32917 1.33737 0.86228 0.80549 0.78593 0.81183 1.18359 1.19702 1.19965 1.20666 1.01775 1.08237 0.92778 1.20264 0.93200 0.98392 0.97762 0.90052 0.90358 0.90801 0.83824 0.84026 0.84462 0.84166 0.77135 0.89093 0.85872 0.90862 0.88593 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.09 37.16 0.34 -1.28 16 2 C 0.07 0.80 2.64 -27.88 -0.07 0.73 16 3 H 0.10 0.88 6.37 -51.93 -0.33 0.55 16 4 O -0.28 -3.83 9.34 -39.43 -0.37 -4.19 16 5 C 0.13 1.43 6.59 -39.24 -0.26 1.17 16 6 C -0.12 -1.23 9.98 -39.44 -0.39 -1.63 16 7 C -0.11 -1.00 10.02 -39.53 -0.40 -1.39 16 8 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 9 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 10 C -0.11 -0.95 10.02 -39.53 -0.40 -1.35 16 11 C -0.19 -1.68 8.20 -39.44 -0.32 -2.00 16 12 C 0.50 8.50 6.91 -10.98 -0.08 8.43 16 13 O -0.51 -11.16 14.12 -14.31 -0.20 -11.36 16 14 N -0.64 -10.63 5.28 -9.74 -0.05 -10.69 16 15 C -0.01 -0.21 6.30 -83.57 -0.53 -0.74 16 16 C -0.11 -2.46 9.89 -39.79 -0.39 -2.85 16 17 C -0.15 -3.83 8.63 -39.26 -0.34 -4.17 16 18 C 0.11 2.78 5.57 -106.80 -0.60 2.18 16 19 C -0.45 -11.88 9.04 -37.85 -0.34 -12.23 16 20 H 0.08 2.00 7.89 -52.49 -0.41 1.58 16 21 C 0.07 1.79 5.18 -17.33 -0.09 1.70 16 22 N -0.79 -20.09 10.88 55.55 0.60 -19.49 16 23 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 C -0.21 -5.39 9.74 -39.26 -0.38 -5.77 16 28 C -0.08 -1.81 8.58 -39.79 -0.34 -2.15 16 29 H 0.08 0.59 7.76 -51.93 -0.40 0.18 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.54 6.81 -51.93 -0.35 0.18 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.14 0.97 5.39 -52.49 -0.28 0.69 16 36 H 0.40 4.81 8.42 -40.82 -0.34 4.47 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 3.16 6.14 -52.49 -0.32 2.84 16 39 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 40 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 41 H 0.10 2.40 6.35 -52.49 -0.33 2.07 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -31.29 353.34 -9.02 -40.30 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.45 Total: 9.35 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -4.88 Total: -21.12 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.55 Total: -30.17 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.57 Total: -15.55 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.29 -9.02 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015030219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.773 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds