Wall clock time and date at job start Tue Mar 31 2020 07:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47393 * 2 1 4 4 O 1.42899 * 109.46977 * 239.99934 * 2 1 3 5 5 C 1.35946 * 116.99835 * 84.15618 * 4 2 1 6 6 C 1.38709 * 120.02805 * 174.13685 * 5 4 2 7 7 C 1.38149 * 119.96799 * 179.79288 * 6 5 4 8 8 C 1.38460 * 120.03187 * 0.48181 * 7 6 5 9 9 F 1.35101 * 119.97338 * 179.72254 * 8 7 6 10 10 C 1.38456 * 120.05538 * 359.75224 * 8 7 6 11 11 C 1.38152 * 120.03250 * 0.02562 * 10 8 7 12 12 C 1.50696 * 109.46893 * 120.00309 * 2 1 3 13 13 O 1.21289 * 120.00281 * 114.99654 * 12 2 1 14 14 N 1.34784 * 120.00097 * 294.99535 * 12 2 1 15 15 C 1.39238 * 119.99779 * 185.23779 * 14 12 2 16 16 C 1.39478 * 119.82994 * 212.52807 * 15 14 12 17 17 C 1.36384 * 120.16828 * 179.76612 * 16 15 14 18 18 C 1.40866 * 119.82471 * 0.51419 * 17 16 15 19 19 C 1.41153 * 120.16437 * 179.71778 * 18 17 16 20 20 H 1.07999 * 120.00231 * 205.50880 * 19 18 17 21 21 C 1.39910 * 119.99715 * 25.51278 * 19 18 17 22 22 N 1.30873 * 120.00213 * 15.64006 * 21 19 18 23 23 Si 1.86797 * 119.99807 * 195.64423 * 21 19 18 24 24 H 1.48499 * 109.47078 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47493 * 119.99747 * 23 21 19 26 26 H 1.48500 * 109.46760 * 239.99807 * 23 21 19 27 27 C 1.40876 * 119.67498 * 359.74145 * 18 17 16 28 28 C 1.36375 * 119.82592 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47190 * 299.99816 * 1 2 3 30 30 H 1.08995 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47073 * 59.99787 * 1 2 3 32 32 H 1.07995 * 120.01877 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.98771 * 180.21243 * 7 6 5 34 34 H 1.08004 * 119.98219 * 179.97438 * 10 8 7 35 35 H 1.07996 * 120.01352 * 179.97438 * 11 10 8 36 36 H 0.96992 * 119.99484 * 5.24515 * 14 12 2 37 37 H 1.08001 * 119.91642 * 0.02686 * 16 15 14 38 38 H 1.07997 * 120.08726 * 180.25570 * 17 16 15 39 39 H 0.96991 * 120.00136 * 180.02562 * 22 21 19 40 40 H 1.07994 * 120.08502 * 179.97438 * 27 18 17 41 41 H 1.08001 * 119.91488 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0957 0.0584 -2.3088 6 6 2.6633 -0.4964 -3.4463 7 6 2.7497 0.2472 -4.6074 8 6 2.2791 1.5491 -4.6331 9 9 2.3692 2.2771 -5.7676 10 6 1.7167 2.1057 -3.4969 11 6 1.6249 1.3628 -2.3358 12 6 2.0323 -0.7105 1.2304 13 8 2.6529 -1.7468 1.1215 14 7 1.7919 -0.1942 2.4520 15 6 2.3476 -0.7900 3.5812 16 6 1.6547 -0.7641 4.7914 17 6 2.1904 -1.3496 5.9006 18 6 3.4517 -1.9721 5.8242 19 6 4.0156 -2.5751 6.9692 20 1 5.0873 -2.6792 7.0523 21 6 3.1860 -3.0380 7.9963 22 7 1.9050 -3.1977 7.7811 23 14 3.9068 -3.4278 9.6749 24 1 5.3683 -3.1656 9.6591 25 1 3.2609 -2.5716 10.7020 26 1 3.6641 -4.8568 9.9979 27 6 4.1479 -1.9895 4.5996 28 6 3.5972 -1.4040 3.4979 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 3.0341 -1.5105 -3.4255 33 1 3.1884 -0.1857 -5.4943 34 1 1.3504 3.1215 -3.5182 35 1 1.1866 1.7974 -1.4496 36 1 1.2317 0.5922 2.5445 37 1 0.6896 -0.2828 4.8493 38 1 1.6509 -1.3324 6.8360 39 1 1.3298 -3.5182 8.4932 40 1 5.1155 -2.4645 4.5337 41 1 4.1299 -1.4161 2.5585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015030219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:43 Heat of formation + Delta-G solvation = -83.962247 kcal Electronic energy + Delta-G solvation = -26160.742838 eV Core-core repulsion = 22112.662702 eV Total energy + Delta-G solvation = -4048.080136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -49.82199 -41.84254 -40.78205 -39.15499 -38.12645 -36.23073 -34.91373 -33.25113 -32.05428 -31.47489 -30.67002 -30.20885 -27.12675 -25.59292 -24.32375 -23.62868 -23.09027 -22.43007 -21.11921 -19.53863 -19.30478 -18.90348 -18.33690 -17.76816 -17.24679 -17.02817 -16.83091 -16.50445 -15.89734 -15.84163 -15.70605 -15.57166 -14.91709 -14.74327 -14.57057 -14.33810 -14.16203 -14.01627 -13.73708 -13.69149 -13.38576 -13.26710 -13.14071 -12.85782 -12.78784 -12.76105 -12.46852 -11.99504 -11.81470 -11.73454 -11.46173 -11.19211 -10.85063 -10.62563 -10.19674 -9.48861 -9.15526 -8.87199 -8.61132 -6.29500 0.13637 0.16999 0.74787 1.12305 1.38687 1.40842 1.54732 1.56786 1.72508 2.21875 2.54293 2.58588 2.74432 3.31281 3.48996 3.67756 3.71145 3.74802 3.82441 3.88366 4.13559 4.29525 4.38478 4.45945 4.48269 4.65876 4.70437 4.89267 4.91238 5.07325 5.09355 5.12064 5.12893 5.14745 5.21262 5.28817 5.40615 5.64060 5.66972 5.86234 6.00047 6.07725 6.27333 6.35756 6.63191 6.67173 6.91893 6.96827 7.30889 8.32561 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.040214 B = 0.001978 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.111824 B =14152.636798 C =14447.177167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.133 0.867 4 O -0.311 6.311 5 C 0.107 3.893 6 C -0.136 4.136 7 C -0.110 4.110 8 C 0.041 3.959 9 F -0.148 7.148 10 C -0.107 4.107 11 C -0.180 4.180 12 C 0.498 3.502 13 O -0.563 6.563 14 N -0.631 5.631 15 C 0.008 3.992 16 C -0.107 4.107 17 C -0.171 4.171 18 C 0.074 3.926 19 C -0.493 4.493 20 H 0.073 0.927 21 C 0.034 3.966 22 N -0.824 5.824 23 Si 0.985 3.015 24 H -0.260 1.260 25 H -0.260 1.260 26 H -0.268 1.268 27 C -0.235 4.235 28 C -0.090 4.090 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.421 0.579 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.290 0.710 40 H 0.092 0.908 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 12.647 -17.224 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.017 3.983 3 H 0.150 0.850 4 O -0.224 6.224 5 C 0.061 3.939 6 C -0.154 4.154 7 C -0.129 4.129 8 C 0.022 3.978 9 F -0.127 7.127 10 C -0.125 4.125 11 C -0.198 4.198 12 C 0.285 3.715 13 O -0.441 6.441 14 N -0.278 5.278 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.190 4.190 18 C 0.071 3.929 19 C -0.523 4.523 20 H 0.091 0.909 21 C -0.181 4.181 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.184 1.184 25 H -0.184 1.184 26 H -0.193 1.193 27 C -0.255 4.255 28 C -0.110 4.110 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.184 0.816 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.800 11.676 -17.245 21.618 hybrid contribution 0.244 -0.168 0.588 0.658 sum -5.556 11.508 -16.657 20.994 Atomic orbital electron populations 1.22402 0.90091 1.04294 1.06209 1.22309 0.97361 0.97134 0.81506 0.84998 1.86223 1.81426 1.38477 1.16264 1.19358 0.96535 0.91445 0.86529 1.20478 1.02389 1.01977 0.90601 1.21132 1.00048 0.92538 0.99171 1.17824 1.05367 0.91105 0.83516 1.91477 1.94748 1.77268 1.49209 1.21218 0.98742 1.01847 0.90740 1.21429 1.04866 0.92972 1.00573 1.20895 0.80282 0.85069 0.85224 1.90733 1.41715 1.24885 1.86770 1.42677 1.50575 1.31056 1.03488 1.17160 0.94544 1.09625 0.87198 1.20495 0.98848 1.01458 0.91936 1.20963 0.98159 1.01577 0.98349 1.18014 0.92774 0.89943 0.92148 1.19819 0.94894 1.35397 1.02168 0.90856 1.26764 0.94814 0.92571 1.03966 1.69869 1.06470 1.33425 1.35211 0.85115 0.79545 0.78628 0.76150 1.18408 1.18402 1.19281 1.20782 1.02067 1.09286 0.93332 1.20367 0.94454 0.99099 0.97051 0.87499 0.92388 0.88254 0.84089 0.82359 0.81928 0.81592 0.74053 0.85210 0.86837 0.89969 0.88994 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.09 71.98 0.65 -1.86 16 2 C 0.08 1.61 2.64 29.85 0.08 1.69 16 3 H 0.13 1.84 6.37 -2.39 -0.02 1.82 16 4 O -0.31 -8.18 9.34 -73.95 -0.69 -8.87 16 5 C 0.11 2.21 6.59 22.49 0.15 2.36 16 6 C -0.14 -2.66 9.98 22.36 0.22 -2.44 16 7 C -0.11 -1.83 10.02 22.30 0.22 -1.60 16 8 C 0.04 0.70 7.30 22.37 0.16 0.86 16 9 F -0.15 -2.73 17.27 44.97 0.78 -1.95 16 10 C -0.11 -1.47 10.02 22.30 0.22 -1.25 16 11 C -0.18 -2.62 8.20 22.36 0.18 -2.44 16 12 C 0.50 16.24 6.91 87.65 0.61 16.84 16 13 O -0.56 -25.15 14.12 15.93 0.23 -24.92 16 14 N -0.63 -19.42 5.28 -303.10 -1.60 -21.02 16 15 C 0.01 0.34 6.30 38.56 0.24 0.58 16 16 C -0.11 -4.62 9.89 22.14 0.22 -4.40 16 17 C -0.17 -8.69 8.63 22.48 0.19 -8.50 16 18 C 0.07 4.05 5.57 -21.27 -0.12 3.93 16 19 C -0.49 -26.89 9.04 23.39 0.21 -26.68 16 20 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 21 C 0.03 1.68 5.18 85.24 0.44 2.12 16 22 N -0.82 -42.46 10.88 21.82 0.24 -42.22 16 23 Si 0.98 37.93 29.59 68.60 2.03 39.96 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 27 C -0.23 -12.35 9.74 22.48 0.22 -12.13 16 28 C -0.09 -4.35 8.58 22.13 0.19 -4.16 16 29 H 0.11 1.01 7.76 -2.39 -0.02 0.99 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 0.99 6.81 -2.39 -0.02 0.97 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.17 1.44 5.39 -2.91 -0.02 1.43 16 36 H 0.42 8.56 8.42 -92.71 -0.78 7.78 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.11 5.94 6.14 -2.91 -0.02 5.92 16 39 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 40 H 0.09 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.10 4.82 6.35 -2.91 -0.02 4.80 16 Total: -1.00 -72.28 353.34 5.39 -66.89 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.31 Total: 29.21 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.10 Total: -37.07 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -1.36 Total: -63.24 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.47 Total: -33.79 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -72.28 5.39 -66.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015030219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.071 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds