Wall clock time and date at job start Tue Mar 31 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76203 * 103.00062 * 2 1 4 4 C 1.39031 * 120.18273 * 0.02562 * 3 2 1 5 5 C 1.37917 * 120.06054 * 180.02562 * 4 3 2 6 6 C 1.38650 * 120.43682 * 359.97438 * 5 4 3 7 7 C 1.37738 * 120.36965 * 0.02562 * 6 5 4 8 8 C 1.39757 * 119.92947 * 0.02562 * 7 6 5 9 9 C 1.47362 * 120.21448 * 179.97438 * 8 7 6 10 10 O 1.21626 * 119.99860 * 180.02562 * 9 8 7 11 11 N 1.34769 * 119.99931 * 359.97438 * 9 8 7 12 12 C 1.39916 * 120.00146 * 175.48315 * 11 9 8 13 13 C 1.38941 * 120.00683 * 214.86447 * 12 11 9 14 14 C 1.38000 * 119.99919 * 179.74162 * 13 12 11 15 15 C 1.38915 * 120.00080 * 0.53093 * 14 13 12 16 16 O 1.35773 * 119.99563 * 179.70001 * 15 14 13 17 17 C 1.34813 * 116.99809 * 185.37382 * 16 15 14 18 18 H 1.07995 * 120.00235 * 354.97035 * 17 16 15 19 19 C 1.38630 * 119.99633 * 174.96569 * 17 16 15 20 20 N 1.31576 * 120.00558 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99956 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46713 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47609 * 119.99561 * 21 19 17 24 24 H 1.48501 * 109.46764 * 240.00038 * 21 19 17 25 25 C 1.38912 * 120.00681 * 359.72374 * 15 14 13 26 26 C 1.38005 * 120.00130 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47483 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47065 * 299.99803 * 1 2 3 29 29 H 1.09006 * 109.47419 * 59.99818 * 1 2 3 30 30 H 1.08005 * 119.97424 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.78258 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.81674 * 179.74546 * 6 5 4 33 33 H 1.08003 * 120.03750 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00409 * 355.48349 * 11 9 8 35 35 H 1.08003 * 119.99932 * 359.97438 * 13 12 11 36 36 H 1.08000 * 119.99925 * 180.25905 * 14 13 12 37 37 H 0.96995 * 120.00104 * 179.97438 * 20 19 17 38 38 H 1.07995 * 120.00229 * 179.97438 * 25 15 14 39 39 H 1.07998 * 119.99559 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1966 2.6683 0.0005 5 6 1.5097 4.0115 0.0000 6 6 2.8334 4.4241 -0.0005 7 6 3.8519 3.4968 -0.0011 8 6 3.5521 2.1318 -0.0016 9 6 4.6368 1.1343 -0.0028 10 8 4.3714 -0.0527 -0.0037 11 7 5.9228 1.5373 -0.0038 12 6 6.9517 0.5938 0.0905 13 6 8.1157 0.9021 0.7837 14 6 9.1282 -0.0305 0.8812 15 6 8.9882 -1.2735 0.2769 16 8 9.9870 -2.1887 0.3677 17 6 9.8360 -3.3308 -0.3325 18 1 8.9159 -3.5200 -0.8652 19 6 10.8621 -4.2623 -0.3689 20 7 11.9835 -4.0315 0.2796 21 14 10.6534 -5.8445 -1.3398 22 1 9.3108 -5.8623 -1.9742 23 1 11.6992 -5.9219 -2.3911 24 1 10.7837 -7.0072 -0.4252 25 6 7.8267 -1.5799 -0.4207 26 6 6.8119 -0.6493 -0.5139 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.1628 2.3554 0.0014 31 1 0.7186 4.7467 0.0000 32 1 3.0672 5.4785 -0.0051 33 1 4.8811 3.8242 -0.0019 34 1 6.1352 2.4815 -0.0700 35 1 8.2265 1.8702 1.2495 36 1 10.0313 0.2076 1.4236 37 1 12.7012 -4.6835 0.2545 38 1 7.7181 -2.5461 -0.8908 39 1 5.9091 -0.8875 -1.0566 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018828109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:56 Heat of formation + Delta-G solvation = 4.933992 kcal Electronic energy + Delta-G solvation = -23970.847451 eV Core-core repulsion = 20357.002226 eV Total energy + Delta-G solvation = -3613.845225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.087 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51192 -39.08188 -38.27551 -36.45481 -34.10081 -32.24447 -31.68262 -31.44978 -30.17409 -28.97193 -27.90063 -25.35644 -24.17844 -23.06829 -22.30858 -21.44632 -20.12688 -18.76876 -17.92930 -17.32079 -17.01958 -16.40641 -15.62818 -15.32227 -15.09897 -14.84094 -14.48809 -14.28005 -14.20804 -14.00010 -13.81610 -13.54903 -13.51854 -12.95829 -12.89799 -12.77753 -12.53207 -12.03938 -11.72684 -11.66165 -11.55669 -11.42684 -11.02391 -10.78833 -10.52638 -10.39567 -10.05432 -9.67580 -9.39010 -9.36404 -9.08127 -8.68478 -8.17911 -7.54328 -6.90608 -6.42628 -3.99896 0.51744 0.88918 1.39981 2.14763 2.25142 2.36066 2.83889 3.15368 3.17387 3.23060 3.26279 3.58657 3.99984 4.38548 4.46762 4.59703 4.65291 4.85948 4.87150 4.94918 5.01736 5.12159 5.24085 5.27847 5.45160 5.48238 5.68997 5.75117 5.79473 5.87123 6.05021 6.15541 6.19758 6.36402 6.42776 6.74463 6.87748 7.02743 7.11245 7.33260 7.46332 7.67867 7.79443 8.02905 8.32621 9.03449 9.72846 10.75398 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.002606 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.751927 B =10741.376957 C =11969.988270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 S 0.007 5.993 3 C -0.045 4.045 4 C -0.147 4.147 5 C -0.075 4.075 6 C -0.139 4.139 7 C -0.066 4.066 8 C -0.123 4.123 9 C 0.543 3.457 10 O -0.497 6.497 11 N -0.652 5.652 12 C 0.033 3.967 13 C -0.092 4.092 14 C -0.178 4.178 15 C 0.147 3.853 16 O -0.177 6.177 17 C -0.389 4.389 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.220 4.220 26 C -0.062 4.062 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.400 0.600 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.269 0.731 38 H 0.131 0.869 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 16.587 -1.279 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.371 4.371 2 S 0.254 5.746 3 C -0.160 4.160 4 C -0.171 4.171 5 C -0.096 4.096 6 C -0.160 4.160 7 C -0.086 4.086 8 C -0.134 4.134 9 C 0.331 3.669 10 O -0.374 6.374 11 N -0.297 5.297 12 C -0.059 4.059 13 C -0.112 4.112 14 C -0.198 4.198 15 C 0.093 3.907 16 O -0.080 6.080 17 C -0.465 4.465 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.240 4.240 26 C -0.082 4.082 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.236 0.764 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.148 0.852 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.147 14.467 -1.106 24.828 hybrid contribution -0.928 0.975 -0.474 1.427 sum -21.075 15.442 -1.580 26.174 Atomic orbital electron populations 1.24137 1.01275 1.06829 1.04842 1.87329 0.99629 0.98962 1.88692 1.22243 0.95006 0.99080 0.99701 1.21144 0.98236 0.93061 1.04669 1.21216 0.96802 0.95302 0.96233 1.21069 0.92512 0.99788 1.02626 1.21279 0.99825 0.91356 0.96164 1.19564 0.91739 0.93764 1.08291 1.18131 0.82576 0.88389 0.77794 1.90723 1.81590 1.16691 1.48411 1.43009 1.04440 1.09677 1.72557 1.17225 0.89858 0.91966 1.06879 1.20349 0.93120 0.98954 0.98764 1.19982 1.00482 0.92193 1.07149 1.19417 0.88524 0.89554 0.93177 1.83971 1.37998 1.25178 1.60854 1.21394 1.02626 0.93448 1.29080 0.88930 1.25286 0.94463 0.99311 0.97484 1.70054 1.04600 1.35575 1.39590 0.85649 0.78790 0.80114 0.78926 1.19006 1.20161 1.20153 1.21111 0.94521 1.01321 1.07033 1.20870 0.98195 0.92161 0.96950 0.87612 0.90306 0.90312 0.85274 0.85383 0.85181 0.85117 0.76437 0.86755 0.86043 0.92097 0.85166 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 9.15 101.05 0.92 -0.71 16 2 S 0.01 0.09 19.47 -107.50 -2.09 -2.00 16 3 C -0.05 -0.54 6.16 -38.46 -0.24 -0.77 16 4 C -0.15 -1.32 9.36 -39.41 -0.37 -1.69 16 5 C -0.08 -0.55 10.03 -39.55 -0.40 -0.95 16 6 C -0.14 -1.01 10.02 -39.61 -0.40 -1.41 16 7 C -0.07 -0.59 9.53 -39.20 -0.37 -0.97 16 8 C -0.12 -1.52 5.89 -104.79 -0.62 -2.14 16 9 C 0.54 8.35 7.59 -12.55 -0.10 8.26 16 10 O -0.50 -9.26 11.20 5.25 0.06 -9.21 16 11 N -0.65 -9.32 5.28 -10.81 -0.06 -9.37 16 12 C 0.03 0.59 6.30 -83.65 -0.53 0.07 16 13 C -0.09 -1.61 9.96 -39.41 -0.39 -2.01 16 14 C -0.18 -3.73 9.98 -39.42 -0.39 -4.13 16 15 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 16 O -0.18 -5.08 9.75 0.03 0.00 -5.08 16 17 C -0.39 -11.03 9.48 30.88 0.29 -10.73 16 18 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 21 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.22 -5.03 9.16 -39.42 -0.36 -5.39 16 26 C -0.06 -1.27 8.69 -39.41 -0.34 -1.61 16 27 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.55 7.75 -51.92 -0.40 0.14 16 29 H 0.08 0.54 7.75 -51.92 -0.40 0.14 16 30 H 0.13 0.90 5.90 -52.48 -0.31 0.59 16 31 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 32 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.13 0.85 6.41 -52.48 -0.34 0.51 16 34 H 0.40 4.15 6.86 -40.82 -0.28 3.87 16 35 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 3.01 5.63 -52.49 -0.30 2.71 16 39 H 0.13 2.57 6.22 -52.49 -0.33 2.25 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -33.85 344.10 -8.68 -42.53 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.87 Total: 6.67 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.64 Total: -19.85 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.70 Total: -34.10 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.06 Total: -14.29 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.09 Total: -2.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.85 -8.68 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018828109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.465 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds