Wall clock time and date at job start Tue Mar 31 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36218 * 125.48386 * 2 1 4 4 S 1.71194 * 126.11291 * 0.03170 * 3 2 1 5 5 C 1.41706 * 107.77961 * 180.02562 * 3 2 1 6 6 C 1.41784 * 126.55709 * 179.97438 * 5 3 2 7 7 N 1.30812 * 119.99305 * 359.97438 * 6 5 3 8 8 N 1.40106 * 119.99782 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00247 * 180.02562 * 8 7 6 10 10 O 1.22154 * 119.99486 * 359.97438 * 9 8 7 11 11 C 1.39076 * 119.99972 * 180.02562 * 9 8 7 12 12 H 1.08001 * 120.00013 * 359.97438 * 11 9 8 13 13 C 1.39688 * 119.99551 * 179.97438 * 11 9 8 14 14 N 1.30908 * 120.00018 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99479 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47583 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46816 * 120.00396 * 15 13 11 18 18 H 1.48500 * 109.47200 * 239.99881 * 15 13 11 19 19 C 1.40718 * 106.89583 * 359.97438 * 5 3 2 20 20 C 1.37749 * 107.47519 * 359.74005 * 19 5 3 21 21 C 1.47338 * 125.59291 * 180.25426 * 20 19 5 22 22 C 1.39921 * 120.17384 * 21.52613 * 21 20 19 23 23 C 1.37845 * 119.82058 * 179.71730 * 22 21 20 24 24 C 1.38460 * 120.17778 * 0.53313 * 23 22 21 25 25 C 1.38462 * 120.34790 * 359.76408 * 24 23 22 26 26 C 1.37849 * 120.17694 * 359.95621 * 25 24 23 27 27 H 1.08998 * 109.47475 * 95.88409 * 1 2 3 28 28 H 1.08998 * 109.46903 * 215.88299 * 1 2 3 29 29 H 1.08999 * 109.47319 * 335.88069 * 1 2 3 30 30 H 1.41000 * 99.99700 * 90.00193 * 4 3 2 31 31 H 1.07997 * 120.00697 * 179.97438 * 6 5 3 32 32 H 0.96996 * 119.99812 * 0.02562 * 8 7 6 33 33 H 0.97003 * 119.99548 * 179.97438 * 14 13 11 34 34 H 1.08003 * 126.26824 * 180.02562 * 19 5 3 35 35 H 1.08001 * 120.08395 * 359.97438 * 22 21 20 36 36 H 1.07998 * 119.91131 * 180.29813 * 23 22 21 37 37 H 1.07990 * 119.82672 * 179.73963 * 24 23 22 38 38 H 1.07996 * 119.90740 * 179.97438 * 25 24 23 39 39 H 1.07991 * 120.08537 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2557 1.1092 0.0000 4 16 1.7153 2.7336 0.0008 5 6 3.6057 0.6783 -0.0006 6 6 4.7565 1.5064 -0.0013 7 7 4.6256 2.8080 -0.0020 8 7 5.7627 3.6264 -0.0032 9 6 5.6279 4.9674 -0.0034 10 8 4.5142 5.4692 -0.0029 11 6 6.7567 5.7798 -0.0052 12 1 7.7414 5.3360 -0.0060 13 6 6.6169 7.1696 -0.0059 14 7 5.4234 7.7074 -0.0054 15 14 8.1331 8.2607 -0.0075 16 1 9.3527 7.4136 -0.0085 17 1 8.1251 9.1174 -1.2205 18 1 8.1268 9.1188 1.2045 19 6 3.5858 -0.7288 -0.0004 20 6 2.2662 -1.1239 0.0063 21 6 1.7884 -2.5176 0.0142 22 6 2.6264 -3.5459 0.4594 23 6 2.1698 -4.8465 0.4691 24 6 0.8896 -5.1380 0.0296 25 6 0.0564 -4.1269 -0.4182 26 6 0.4961 -2.8204 -0.4288 27 1 -0.3634 -0.1053 -1.0222 28 1 -0.3633 -0.8326 0.6023 29 1 -0.3634 0.9379 0.4199 30 1 1.6387 2.9654 1.3895 31 1 5.7412 1.0628 -0.0013 32 1 6.6470 3.2279 -0.0040 33 1 5.3264 8.6726 -0.0055 34 1 4.4475 -1.3799 -0.0003 35 1 3.6267 -3.3205 0.7983 36 1 2.8137 -5.6407 0.8170 37 1 0.5392 -6.1595 0.0357 38 1 -0.9406 -4.3624 -0.7599 39 1 -0.1551 -2.0329 -0.7780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020427488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:21 Heat of formation + Delta-G solvation = 89.361459 kcal Electronic energy + Delta-G solvation = -23801.127970 eV Core-core repulsion = 20223.236546 eV Total energy + Delta-G solvation = -3577.891424 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.01211 -38.88353 -37.47053 -35.33835 -33.32970 -32.47756 -32.16731 -31.17103 -30.29975 -27.68575 -27.14795 -26.10122 -23.20364 -22.99915 -22.37510 -20.22656 -19.77530 -19.20369 -17.87136 -16.97330 -16.81745 -16.16117 -15.91103 -15.61543 -15.44226 -14.98582 -14.67086 -14.09544 -13.86782 -13.67956 -13.35322 -13.17085 -13.03486 -12.98501 -12.64520 -12.51616 -12.38863 -12.18018 -11.43128 -11.31404 -11.28864 -11.17039 -10.82996 -10.55828 -10.54660 -10.26826 -9.46612 -9.40851 -9.22906 -9.04350 -8.68379 -7.71613 -7.59666 -7.28763 -6.87085 -6.30399 -4.88071 0.70449 1.13889 1.52890 2.13629 2.47577 2.86012 3.07203 3.15285 3.20161 3.21714 3.62287 3.85268 3.90426 4.21434 4.45553 4.53264 4.55520 4.67437 4.71008 4.83957 4.99629 5.15996 5.20855 5.23373 5.34798 5.51592 5.64219 5.76931 5.80797 5.92028 5.98836 6.15197 6.18732 6.24513 6.47869 6.68942 6.75152 6.99176 7.02366 7.18807 7.28103 7.99715 8.09675 8.84186 8.90160 9.46370 10.46733 10.80781 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.031363 B = 0.002342 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.563068 B =11952.476921 C =12788.665956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.410 5.410 3 C -0.020 4.020 4 S -0.006 6.006 5 C -0.036 4.036 6 C 0.024 3.976 7 N -0.157 5.157 8 N -0.593 5.593 9 C 0.559 3.441 10 O -0.548 6.548 11 C -0.535 4.535 12 H 0.068 0.932 13 C 0.088 3.912 14 N -0.743 5.743 15 Si 0.915 3.085 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.155 4.155 20 C 0.053 3.947 21 C -0.006 4.006 22 C -0.103 4.103 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.133 4.133 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.364 0.636 33 H 0.271 0.729 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -22.953 0.689 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.085 5.085 3 C -0.248 4.248 4 S 0.151 5.849 5 C -0.048 4.048 6 C -0.183 4.183 7 N 0.032 4.968 8 N -0.339 5.339 9 C 0.367 3.633 10 O -0.428 6.428 11 C -0.572 4.572 12 H 0.087 0.913 13 C -0.136 4.136 14 N -0.371 5.371 15 Si 0.739 3.261 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.183 4.183 20 C -0.062 4.062 21 C -0.007 4.007 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.146 4.146 25 C -0.132 4.132 26 C -0.151 4.151 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.040 0.960 31 H 0.122 0.878 32 H 0.199 0.801 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.812 -20.549 0.451 23.225 hybrid contribution 2.243 -1.272 0.899 2.731 sum -8.569 -21.821 1.350 23.482 Atomic orbital electron populations 1.22320 0.77361 1.05050 1.03650 1.44622 1.05950 1.04974 1.52963 1.22370 0.91968 0.91747 1.18707 1.86343 1.85791 1.02035 1.10754 1.17613 0.89821 0.92193 1.05158 1.22149 0.95763 0.91095 1.09280 1.75561 1.14452 1.03713 1.03110 1.48250 1.02556 1.07256 1.75832 1.16290 0.91253 0.77103 0.78644 1.90781 1.27205 1.71205 1.53569 1.19385 0.93431 0.91458 1.52879 0.91330 1.25694 0.96836 0.98480 0.92555 1.70191 1.22880 1.11852 1.32161 0.86201 0.81685 0.79835 0.78403 1.18595 1.19897 1.19966 1.21123 0.94413 0.93689 1.09071 1.19170 0.89789 0.85271 1.11995 1.18171 0.93943 0.89808 0.98811 1.21217 0.99742 0.91912 0.99336 1.21079 0.96082 0.96333 0.99668 1.21249 0.94387 0.99199 0.99763 1.21042 0.99788 0.92636 0.99758 1.21573 0.95575 0.97207 1.00791 0.90027 0.89472 0.88746 0.95960 0.87777 0.80097 0.91765 0.83638 0.85270 0.85754 0.86152 0.85985 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 9.10 59.85 0.54 1.10 16 2 N -0.41 -5.58 3.18 -118.36 -0.38 -5.96 16 3 C -0.02 -0.34 7.11 -14.28 -0.10 -0.44 16 4 S -0.01 -0.11 23.15 -107.50 -2.49 -2.60 16 5 C -0.04 -0.62 6.01 -106.28 -0.64 -1.26 16 6 C 0.02 0.46 10.77 -16.63 -0.18 0.28 16 7 N -0.16 -3.63 9.08 31.03 0.28 -3.35 16 8 N -0.59 -14.53 6.26 28.60 0.18 -14.35 16 9 C 0.56 16.39 7.60 -15.95 -0.12 16.27 16 10 O -0.55 -18.25 15.14 4.78 0.07 -18.18 16 11 C -0.53 -14.97 9.15 -38.73 -0.35 -15.33 16 12 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 13 C 0.09 2.40 5.49 -17.40 -0.10 2.30 16 14 N -0.74 -21.93 11.67 55.53 0.65 -21.28 16 15 Si 0.91 19.64 29.56 -169.99 -5.02 14.62 16 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 C -0.15 -2.15 10.16 -38.82 -0.39 -2.55 16 20 C 0.05 0.69 6.70 -81.56 -0.55 0.14 16 21 C -0.01 -0.07 5.83 -104.93 -0.61 -0.68 16 22 C -0.10 -0.96 9.56 -39.10 -0.37 -1.34 16 23 C -0.11 -0.89 10.03 -39.64 -0.40 -1.29 16 24 C -0.13 -0.95 10.05 -39.42 -0.40 -1.35 16 25 C -0.11 -0.89 10.03 -39.64 -0.40 -1.29 16 26 C -0.13 -1.23 8.51 -39.09 -0.33 -1.56 16 27 H 0.08 0.65 7.57 -51.93 -0.39 0.26 16 28 H 0.09 0.67 6.48 -51.93 -0.34 0.33 16 29 H 0.09 0.87 7.44 -51.93 -0.39 0.49 16 30 H 0.08 1.38 9.55 96.90 0.93 2.30 16 31 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 32 H 0.36 7.57 8.61 -182.60 -1.57 6.00 16 33 H 0.27 7.17 8.30 -40.82 -0.34 6.83 16 34 H 0.15 1.61 7.67 -52.48 -0.40 1.21 16 35 H 0.13 1.05 7.37 -52.49 -0.39 0.67 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 1.00 4.94 -52.49 -0.26 0.74 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -36.53 353.44 -9.83 -46.36 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.05 Total: 6.37 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -4.40 Total: -6.97 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.73 Total: -44.93 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.07 Total: -18.18 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.49 Total: -2.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.53 -9.83 -46.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020427488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.718 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds