Wall clock time and date at job start Tue Mar 31 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36218 * 125.48386 * 2 1 4 4 S 1.71194 * 126.11291 * 0.03170 * 3 2 1 5 5 C 1.41706 * 107.77961 * 180.02562 * 3 2 1 6 6 C 1.41784 * 126.55709 * 179.97438 * 5 3 2 7 7 N 1.30812 * 119.99305 * 359.97438 * 6 5 3 8 8 N 1.40106 * 119.99782 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00247 * 180.02562 * 8 7 6 10 10 O 1.22154 * 119.99486 * 359.97438 * 9 8 7 11 11 C 1.39076 * 119.99972 * 180.02562 * 9 8 7 12 12 H 1.08001 * 120.00013 * 359.97438 * 11 9 8 13 13 C 1.39688 * 119.99551 * 179.97438 * 11 9 8 14 14 N 1.30908 * 120.00018 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99479 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47583 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46816 * 120.00396 * 15 13 11 18 18 H 1.48500 * 109.47200 * 239.99881 * 15 13 11 19 19 C 1.40718 * 106.89583 * 359.97438 * 5 3 2 20 20 C 1.37749 * 107.47519 * 359.74005 * 19 5 3 21 21 C 1.47338 * 125.59291 * 180.25426 * 20 19 5 22 22 C 1.39921 * 120.17384 * 21.52613 * 21 20 19 23 23 C 1.37845 * 119.82058 * 179.71730 * 22 21 20 24 24 C 1.38460 * 120.17778 * 0.53313 * 23 22 21 25 25 C 1.38462 * 120.34790 * 359.76408 * 24 23 22 26 26 C 1.37849 * 120.17694 * 359.95621 * 25 24 23 27 27 H 1.08998 * 109.47475 * 95.88409 * 1 2 3 28 28 H 1.08998 * 109.46903 * 215.88299 * 1 2 3 29 29 H 1.08999 * 109.47319 * 335.88069 * 1 2 3 30 30 H 1.41000 * 99.99700 * 90.00193 * 4 3 2 31 31 H 1.07997 * 120.00697 * 179.97438 * 6 5 3 32 32 H 0.96996 * 119.99812 * 0.02562 * 8 7 6 33 33 H 0.97003 * 119.99548 * 179.97438 * 14 13 11 34 34 H 1.08003 * 126.26824 * 180.02562 * 19 5 3 35 35 H 1.08001 * 120.08395 * 359.97438 * 22 21 20 36 36 H 1.07998 * 119.91131 * 180.29813 * 23 22 21 37 37 H 1.07990 * 119.82672 * 179.73963 * 24 23 22 38 38 H 1.07996 * 119.90740 * 179.97438 * 25 24 23 39 39 H 1.07991 * 120.08537 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2557 1.1092 0.0000 4 16 1.7153 2.7336 0.0008 5 6 3.6057 0.6783 -0.0006 6 6 4.7565 1.5064 -0.0013 7 7 4.6256 2.8080 -0.0020 8 7 5.7627 3.6264 -0.0032 9 6 5.6279 4.9674 -0.0034 10 8 4.5142 5.4692 -0.0029 11 6 6.7567 5.7798 -0.0052 12 1 7.7414 5.3360 -0.0060 13 6 6.6169 7.1696 -0.0059 14 7 5.4234 7.7074 -0.0054 15 14 8.1331 8.2607 -0.0075 16 1 9.3527 7.4136 -0.0085 17 1 8.1251 9.1174 -1.2205 18 1 8.1268 9.1188 1.2045 19 6 3.5858 -0.7288 -0.0004 20 6 2.2662 -1.1239 0.0063 21 6 1.7884 -2.5176 0.0142 22 6 2.6264 -3.5459 0.4594 23 6 2.1698 -4.8465 0.4691 24 6 0.8896 -5.1380 0.0296 25 6 0.0564 -4.1269 -0.4182 26 6 0.4961 -2.8204 -0.4288 27 1 -0.3634 -0.1053 -1.0222 28 1 -0.3633 -0.8326 0.6023 29 1 -0.3634 0.9379 0.4199 30 1 1.6387 2.9654 1.3895 31 1 5.7412 1.0628 -0.0013 32 1 6.6470 3.2279 -0.0040 33 1 5.3264 8.6726 -0.0055 34 1 4.4475 -1.3799 -0.0003 35 1 3.6267 -3.3205 0.7983 36 1 2.8137 -5.6407 0.8170 37 1 0.5392 -6.1595 0.0357 38 1 -0.9406 -4.3624 -0.7599 39 1 -0.1551 -2.0329 -0.7780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020427488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:19 Heat of formation + Delta-G solvation = 65.246111 kcal Electronic energy + Delta-G solvation = -23802.173689 eV Core-core repulsion = 20223.236546 eV Total energy + Delta-G solvation = -3578.937144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09193 -39.62397 -39.42360 -37.05486 -34.80527 -34.32251 -33.13256 -32.12576 -31.56428 -29.20358 -28.32462 -27.61277 -24.37706 -23.83155 -23.32654 -21.96816 -20.91026 -20.56334 -19.49849 -18.35731 -17.81913 -17.62962 -17.42266 -16.96471 -16.60472 -15.84576 -15.81106 -15.61387 -15.02119 -14.76238 -14.65629 -14.42739 -14.40709 -14.06329 -13.79128 -13.70983 -13.45968 -13.17541 -13.15525 -12.92557 -12.64409 -12.53157 -12.07798 -11.96674 -11.94196 -11.76449 -10.97520 -10.96772 -10.35397 -10.19061 -9.84017 -9.82164 -8.93601 -8.75557 -8.39013 -8.35392 -7.04102 -0.17583 0.25563 0.52666 0.77774 1.37209 1.40593 1.45530 1.60043 1.67672 1.96490 2.17516 2.33167 2.49182 2.59118 2.98181 3.56286 3.73409 3.78402 3.99919 4.06537 4.12065 4.26028 4.30253 4.32946 4.52923 4.59788 4.62034 4.68107 4.72108 5.03188 5.13672 5.17109 5.22117 5.33060 5.52090 5.54156 5.64393 5.73852 5.87934 5.91379 6.06562 6.13345 6.16349 6.74014 7.11736 7.59364 8.47946 8.72543 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.031363 B = 0.002342 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.563068 B =11952.476921 C =12788.665956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.404 5.404 3 C -0.038 4.038 4 S -0.033 6.033 5 C -0.074 4.074 6 C 0.067 3.933 7 N -0.223 5.223 8 N -0.600 5.600 9 C 0.546 3.454 10 O -0.606 6.606 11 C -0.560 4.560 12 H 0.091 0.909 13 C 0.029 3.971 14 N -0.799 5.799 15 Si 1.007 2.993 16 H -0.244 1.244 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.154 4.154 20 C 0.070 3.930 21 C -0.036 4.036 22 C -0.108 4.108 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.137 4.137 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.378 0.622 33 H 0.279 0.721 34 H 0.175 0.825 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.033 -26.559 0.611 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.078 5.078 3 C -0.268 4.268 4 S 0.124 5.876 5 C -0.086 4.086 6 C -0.141 4.141 7 N -0.032 5.032 8 N -0.346 5.346 9 C 0.355 3.645 10 O -0.491 6.491 11 C -0.596 4.596 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.427 5.427 15 Si 0.826 3.174 16 H -0.167 1.167 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.181 4.181 20 C -0.046 4.046 21 C -0.037 4.037 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.155 4.155 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.032 0.968 31 H 0.153 0.847 32 H 0.215 0.785 33 H 0.089 0.911 34 H 0.192 0.808 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.141 -24.223 0.374 26.262 hybrid contribution 1.808 -0.682 0.920 2.140 sum -8.333 -24.904 1.295 26.294 Atomic orbital electron populations 1.22662 0.75072 1.06037 1.05394 1.44831 1.07408 1.04187 1.51348 1.22197 0.92717 0.91444 1.20403 1.86372 1.86116 1.04685 1.10423 1.17840 0.89425 0.93658 1.07720 1.22769 0.97908 0.90213 1.03195 1.75684 1.13807 1.05352 1.08314 1.47547 1.03718 1.06415 1.76893 1.16664 0.90940 0.78740 0.78124 1.90720 1.29007 1.72989 1.56349 1.19912 0.94059 0.92475 1.53172 0.89126 1.27044 1.00816 1.00028 0.90997 1.70355 1.26303 1.12739 1.33292 0.84838 0.76681 0.77192 0.78733 1.16724 1.19054 1.19100 1.21426 0.95966 0.92253 1.08437 1.19645 0.89544 0.86193 1.09249 1.18208 0.95310 0.88558 1.01667 1.21427 1.00016 0.92282 0.98926 1.21403 0.96730 0.96279 0.99254 1.21670 0.94021 1.00459 0.97862 1.21368 1.00997 0.92044 0.99346 1.21759 0.95050 0.98348 1.00375 0.88101 0.87131 0.88897 0.96794 0.84689 0.78482 0.91107 0.80778 0.84475 0.83457 0.83612 0.83674 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 9.10 127.77 1.16 2.03 16 2 N -0.40 -10.67 3.18 -528.39 -1.68 -12.36 16 3 C -0.04 -1.32 7.11 84.87 0.60 -0.72 16 4 S -0.03 -1.29 23.15 -56.49 -1.31 -2.60 16 5 C -0.07 -2.52 6.01 -20.94 -0.13 -2.65 16 6 C 0.07 2.54 10.77 85.72 0.92 3.46 16 7 N -0.22 -10.75 9.08 -55.75 -0.51 -11.26 16 8 N -0.60 -30.69 6.26 -181.45 -1.13 -31.82 16 9 C 0.55 33.71 7.60 84.44 0.64 34.35 16 10 O -0.61 -43.00 15.14 -5.82 -0.09 -43.09 16 11 C -0.56 -32.25 9.15 22.82 0.21 -32.04 16 12 H 0.09 4.60 7.84 -2.91 -0.02 4.58 16 13 C 0.03 1.64 5.49 85.18 0.47 2.11 16 14 N -0.80 -49.18 11.67 21.78 0.25 -48.93 16 15 Si 1.01 40.55 29.56 68.60 2.03 42.57 16 16 H -0.24 -9.03 7.11 99.48 0.71 -8.32 16 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 19 C -0.15 -4.01 10.16 22.76 0.23 -3.78 16 20 C 0.07 1.71 6.70 40.45 0.27 1.98 16 21 C -0.04 -0.69 5.83 -20.07 -0.12 -0.80 16 22 C -0.11 -1.67 9.56 22.58 0.22 -1.46 16 23 C -0.12 -1.40 10.03 22.23 0.22 -1.18 16 24 C -0.12 -1.30 10.05 22.38 0.22 -1.07 16 25 C -0.12 -1.40 10.03 22.23 0.22 -1.18 16 26 C -0.14 -2.10 8.51 22.59 0.19 -1.91 16 27 H 0.10 1.43 7.57 -2.39 -0.02 1.41 16 28 H 0.11 1.45 6.48 -2.39 -0.02 1.44 16 29 H 0.09 1.71 7.44 -2.39 -0.02 1.69 16 30 H 0.07 2.67 9.55 73.80 0.70 3.38 16 31 H 0.14 4.08 8.03 -2.91 -0.02 4.06 16 32 H 0.38 16.17 8.61 -213.32 -1.84 14.33 16 33 H 0.28 15.34 8.30 -92.71 -0.77 14.57 16 34 H 0.17 3.35 7.67 -2.91 -0.02 3.33 16 35 H 0.14 1.81 7.37 -2.91 -0.02 1.79 16 36 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.15 0.80 8.06 -2.92 -0.02 0.78 16 38 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 39 H 0.13 1.74 4.94 -2.92 -0.01 1.72 16 Total: -1.00 -85.64 353.44 2.90 -82.74 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.01 Total: 27.60 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.35 Total: -2.86 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.07 Total: -104.36 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.09 Total: -43.09 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -1.31 Total: -2.60 kcal Total: -85.64 2.90 -82.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020427488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.985 kcal (2) G-P(sol) polarization free energy of solvation -85.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds