Wall clock time and date at job start Tue Mar 31 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41745 * 119.99764 * 2 1 4 4 C 1.34904 * 119.99888 * 179.97438 * 3 2 1 5 5 C 1.47196 * 120.00321 * 179.97438 * 4 3 2 6 6 C 1.39840 * 120.16672 * 359.72932 * 5 4 3 7 7 C 1.37885 * 119.82259 * 179.67361 * 6 5 4 8 8 C 1.38398 * 120.17102 * 0.62089 * 7 6 5 9 9 C 1.38396 * 120.34679 * 359.67347 * 8 7 6 10 10 C 1.37892 * 120.17247 * 0.02562 * 9 8 7 11 11 N 1.30293 * 119.99871 * 179.97438 * 2 1 3 12 12 N 1.40100 * 120.00367 * 0.02562 * 11 2 1 13 13 C 1.38224 * 120.00294 * 179.97438 * 12 11 2 14 14 N 1.31598 * 125.99716 * 0.02562 * 13 12 11 15 15 C 1.33787 * 109.67426 * 180.02562 * 14 13 12 16 16 S 1.76200 * 125.52885 * 180.02562 * 15 14 13 17 17 C 1.76195 * 100.00101 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.38671 * 120.00323 * 180.02562 * 17 16 15 20 20 N 1.31661 * 119.99677 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00392 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47190 * 89.99899 * 21 19 17 23 23 H 1.48505 * 109.47187 * 209.99871 * 21 19 17 24 24 H 1.48500 * 109.47342 * 329.99691 * 21 19 17 25 25 N 1.31325 * 108.94351 * 0.02562 * 15 14 13 26 26 N 1.35128 * 126.00096 * 179.71008 * 13 12 11 27 27 H 0.97005 * 126.77891 * 0.02562 * 26 13 12 28 28 H 1.09001 * 109.46953 * 90.00087 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99685 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00315 * 1 2 3 31 31 H 1.07997 * 120.00226 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00346 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.08627 * 359.97089 * 6 5 4 34 34 H 1.08007 * 119.91397 * 180.31926 * 7 6 5 35 35 H 1.08003 * 119.82769 * 179.70033 * 8 7 6 36 36 H 1.08000 * 119.91679 * 180.02562 * 9 8 7 37 37 H 1.08003 * 120.08541 * 180.02562 * 10 9 8 38 38 H 0.97001 * 119.99421 * 359.97438 * 12 11 2 39 39 H 0.97000 * 120.00175 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2276 0.0000 4 6 3.5648 1.2276 0.0005 5 6 4.3008 2.5023 0.0000 6 6 3.6052 3.7154 -0.0068 7 6 4.3018 4.9054 -0.0005 8 6 5.6857 4.9012 -0.0004 9 6 6.3814 3.7048 0.0001 10 6 5.6991 2.5064 0.0000 11 7 2.1585 -1.1284 0.0005 12 7 1.4581 -2.3417 0.0005 13 6 2.1492 -3.5388 0.0005 14 7 3.4579 -3.6763 0.0010 15 6 3.7743 -4.9762 0.0002 16 16 5.4097 -5.6321 0.0012 17 6 5.0478 -7.3564 -0.0013 18 1 4.0215 -7.6929 -0.0031 19 6 6.0807 -8.2817 -0.0008 20 7 7.3318 -7.8716 0.0020 21 14 5.6971 -10.1098 -0.0041 22 1 5.5979 -10.5923 -1.4050 23 1 6.7809 -10.8443 0.6968 24 1 4.4076 -10.3463 0.6934 25 7 2.6682 -5.6841 -0.0013 26 7 1.5996 -4.7732 0.0060 27 1 0.6536 -4.9878 0.0104 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6757 2.1629 -0.0004 32 1 4.1049 0.2923 0.0014 33 1 2.5252 3.7202 -0.0122 34 1 3.7660 5.8432 -0.0005 35 1 6.2258 5.8365 -0.0004 36 1 7.4613 3.7096 0.0006 37 1 6.2434 1.5736 0.0009 38 1 0.4880 -2.3417 0.0005 39 1 8.0543 -8.5188 0.0020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020608330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:31 Heat of formation + Delta-G solvation = 174.849436 kcal Electronic energy + Delta-G solvation = -22890.638064 eV Core-core repulsion = 19348.746428 eV Total energy + Delta-G solvation = -3541.891636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08283 -39.44078 -38.28847 -35.09518 -32.84490 -32.55388 -31.73942 -31.18822 -29.90554 -29.08792 -27.86202 -25.52507 -24.20169 -22.80125 -22.39156 -21.40741 -20.49402 -19.43666 -18.26808 -17.50434 -17.25115 -16.25566 -15.80703 -15.43692 -15.26532 -14.86683 -14.84209 -14.64122 -14.37854 -14.33152 -13.60990 -13.55045 -13.15241 -12.91205 -12.56699 -12.44328 -12.15684 -11.45156 -11.37243 -11.12498 -11.11294 -11.02012 -10.97537 -10.88972 -10.28342 -10.09428 -10.03842 -9.66679 -9.35273 -9.17110 -9.08258 -8.56406 -8.51843 -7.59684 -6.63547 -6.33944 -4.06026 0.33604 1.20414 1.58188 2.00035 2.41777 2.89641 2.91447 3.23626 3.27849 3.35511 3.72868 3.76499 3.79603 4.16595 4.27248 4.50362 4.64834 4.67586 4.74426 4.79846 4.95537 5.08053 5.09594 5.13020 5.21887 5.22963 5.30079 5.50217 5.68610 5.76744 5.82694 5.98323 6.10792 6.21018 6.28015 6.29462 6.45954 6.58746 6.71262 6.76581 7.18689 7.64980 7.78073 7.93487 8.42807 8.88318 9.16487 10.73935 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.002297 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.437067 B =12187.794487 C =14091.081664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.095 3.905 3 C -0.118 4.118 4 C -0.056 4.056 5 C -0.062 4.062 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.098 4.098 11 N -0.189 5.189 12 N -0.549 5.549 13 C 0.528 3.472 14 N -0.531 5.531 15 C 0.219 3.781 16 S 0.160 5.840 17 C -0.543 4.543 18 H 0.096 0.904 19 C 0.076 3.924 20 N -0.875 5.875 21 Si 0.928 3.072 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.269 1.269 25 N -0.323 5.323 26 N -0.523 5.523 27 H 0.425 0.575 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.394 0.606 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 24.508 -0.041 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.062 4.062 6 C -0.128 4.128 7 C -0.142 4.142 8 C -0.137 4.137 9 C -0.139 4.139 10 C -0.116 4.116 11 N 0.002 4.998 12 N -0.282 5.282 13 C 0.159 3.841 14 N -0.269 5.269 15 C -0.167 4.167 16 S 0.388 5.612 17 C -0.692 4.692 18 H 0.114 0.886 19 C -0.134 4.134 20 N -0.510 5.510 21 Si 0.754 3.246 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.194 1.194 25 N -0.160 5.160 26 N -0.248 5.248 27 H 0.268 0.732 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.236 0.764 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.453 23.901 -0.033 25.703 hybrid contribution -3.587 -1.404 0.001 3.852 sum -13.040 22.498 -0.032 26.004 Atomic orbital electron populations 1.21215 0.92487 1.03656 1.03379 1.22102 0.94105 0.92135 1.00966 1.20478 0.94177 0.94300 1.04830 1.22578 0.94472 0.96762 0.94299 1.19116 0.93475 0.92885 1.00769 1.21385 0.99883 0.91837 0.99719 1.21062 0.94410 0.97910 1.00842 1.21267 0.94433 0.98112 0.99882 1.21143 1.00167 0.92395 1.00217 1.21507 0.93378 0.98735 0.97998 1.75316 1.23118 0.89840 1.11528 1.43698 1.05613 0.99208 1.79694 1.19773 0.88496 0.79953 0.95876 1.70897 1.07393 1.17880 1.30706 1.27360 1.02548 0.89029 0.97759 1.83763 0.87661 1.03152 1.86583 1.23203 0.97296 0.90251 1.58459 0.88591 1.25030 0.94215 1.00300 0.93821 1.69970 0.98638 1.35499 1.46893 0.86002 0.78321 0.81771 0.78500 1.20100 1.20710 1.19386 1.78678 0.92535 1.10181 1.34618 1.47898 1.09903 1.02331 1.64632 0.73183 0.90011 0.91891 0.89706 0.85007 0.84149 0.85685 0.86071 0.86190 0.85785 0.85117 0.76408 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.50 36.01 0.34 -0.61 16 2 C 0.09 0.97 6.91 -81.90 -0.57 0.40 16 3 C -0.12 -1.07 9.09 -39.43 -0.36 -1.43 16 4 C -0.06 -0.61 9.40 -37.13 -0.35 -0.96 16 5 C -0.06 -0.62 5.87 -105.06 -0.62 -1.24 16 6 C -0.11 -0.90 9.41 -39.11 -0.37 -1.27 16 7 C -0.12 -0.93 10.03 -39.65 -0.40 -1.33 16 8 C -0.12 -0.91 10.04 -39.46 -0.40 -1.31 16 9 C -0.12 -1.04 10.03 -39.65 -0.40 -1.43 16 10 C -0.10 -0.97 9.80 -39.11 -0.38 -1.35 16 11 N -0.19 -2.70 10.21 33.97 0.35 -2.35 16 12 N -0.55 -7.71 6.27 30.05 0.19 -7.53 16 13 C 0.53 9.90 9.12 -320.73 -2.92 6.97 16 14 N -0.53 -12.28 11.12 -14.13 -0.16 -12.44 16 15 C 0.22 5.56 8.20 -90.81 -0.74 4.81 16 16 S 0.16 4.37 21.89 -107.50 -2.35 2.01 16 17 C -0.54 -15.71 9.36 30.89 0.29 -15.42 16 18 H 0.10 2.79 6.87 -52.48 -0.36 2.43 16 19 C 0.08 2.13 5.49 -17.46 -0.10 2.03 16 20 N -0.87 -25.36 13.22 55.48 0.73 -24.62 16 21 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 N -0.32 -7.72 11.51 30.16 0.35 -7.38 16 26 N -0.52 -9.48 7.47 30.04 0.22 -9.26 16 27 H 0.43 5.59 8.96 -182.35 -1.63 3.96 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.38 6.36 -51.93 -0.33 0.05 16 30 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.13 0.80 6.08 -52.49 -0.32 0.48 16 32 H 0.14 1.82 7.34 -52.49 -0.39 1.44 16 33 H 0.13 0.74 6.17 -52.49 -0.32 0.42 16 34 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.39 3.89 6.57 -182.60 -1.20 2.69 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -35.74 359.93 -13.46 -49.20 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.22 Total: 2.42 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -6.97 Total: -12.11 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 1.68 Total: -63.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -2.35 Total: 2.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.74 -13.46 -49.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020608330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.045 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds