Wall clock time and date at job start Tue Mar 31 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 116.99621 * 2 1 4 4 C 1.38804 * 120.02399 * 359.72108 * 3 2 1 5 5 C 1.38177 * 120.09201 * 179.74704 * 4 3 2 6 6 C 1.38167 * 120.12415 * 0.55851 * 5 4 3 7 7 C 1.38911 * 120.03488 * 359.69388 * 6 5 4 8 8 N 1.39833 * 120.04105 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00335 * 214.52259 * 8 7 6 10 10 O 1.21625 * 119.99950 * 5.46342 * 9 8 7 11 11 C 1.47396 * 120.00471 * 185.45340 * 9 8 7 12 12 C 1.39693 * 120.21444 * 0.02562 * 11 9 8 13 13 C 1.37800 * 119.93551 * 180.02562 * 12 11 9 14 14 C 1.38664 * 120.38236 * 0.02562 * 13 12 11 15 15 C 1.37909 * 120.44256 * 359.97438 * 14 13 12 16 16 C 1.39108 * 120.04972 * 359.68243 * 15 14 13 17 17 S 1.76199 * 120.18901 * 180.29802 * 16 15 14 18 18 C 1.76201 * 100.00130 * 8.44532 * 17 16 15 19 19 H 1.08001 * 120.00018 * 5.62949 * 18 17 16 20 20 C 1.38808 * 119.99823 * 185.62401 * 18 17 16 21 21 N 1.31548 * 120.00682 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99706 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46940 * 90.00465 * 22 20 18 24 24 H 1.48501 * 109.47193 * 210.00249 * 22 20 18 25 25 H 1.48499 * 109.47306 * 330.00627 * 22 20 18 26 26 C 1.38582 * 120.01763 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47503 * 300.00336 * 1 2 3 29 29 H 1.08998 * 109.46821 * 60.00314 * 1 2 3 30 30 H 1.07999 * 119.95310 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.94142 * 180.27183 * 5 4 3 32 32 H 1.07995 * 119.97911 * 179.72681 * 6 5 4 33 33 H 0.97003 * 120.00322 * 34.53535 * 8 7 6 34 34 H 1.07995 * 120.02895 * 0.02562 * 12 11 9 35 35 H 1.07998 * 119.80840 * 179.97438 * 13 12 11 36 36 H 1.08005 * 119.77659 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.97017 * 180.02562 * 15 14 13 38 38 H 0.96991 * 120.00723 * 179.97438 * 21 20 18 39 39 H 1.08004 * 120.05975 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3752 -0.0059 5 6 1.9161 3.6072 -0.0006 6 6 3.2956 3.6843 -0.0011 7 6 4.0569 2.5223 -0.0005 8 7 5.4530 2.6002 -0.0006 9 6 6.1795 1.6773 -0.6615 10 8 5.6215 0.8355 -1.3394 11 6 7.6501 1.6881 -0.5632 12 6 8.2956 2.6525 0.2143 13 6 9.6709 2.6576 0.3017 14 6 10.4204 1.7100 -0.3788 15 6 9.7993 0.7507 -1.1508 16 6 8.4118 0.7243 -1.2462 17 16 7.6142 -0.5044 -2.2252 18 6 8.9934 -1.5308 -2.6113 19 1 9.9564 -1.3316 -2.1651 20 6 8.8420 -2.5955 -3.4890 21 7 7.6690 -2.8380 -4.0330 22 14 10.3043 -3.6832 -3.8989 23 1 10.3686 -4.8104 -2.9342 24 1 10.1528 -4.2182 -5.2759 25 1 11.5541 -2.8858 -3.8124 26 6 3.4298 1.2839 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2119 2.3182 -0.0100 31 1 1.3258 4.5116 -0.0007 32 1 3.7822 4.6484 -0.0015 33 1 5.8988 3.3183 0.4753 34 1 7.7174 3.3935 0.7463 35 1 10.1678 3.4045 0.9030 36 1 11.4977 1.7233 -0.3037 37 1 10.3905 0.0160 -1.6773 38 1 7.5633 -3.5817 -4.6466 39 1 4.0193 0.3789 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021706751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:50 Heat of formation + Delta-G solvation = -9.656844 kcal Electronic energy + Delta-G solvation = -24315.598949 eV Core-core repulsion = 20701.121018 eV Total energy + Delta-G solvation = -3614.477931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.087 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -40.49634 -39.43701 -37.89038 -36.93597 -34.28254 -32.78899 -31.11826 -30.45917 -30.30925 -28.86061 -27.22897 -25.86037 -23.95960 -22.64094 -22.12764 -21.53397 -20.08989 -18.66200 -18.00740 -17.20458 -16.26475 -15.98955 -15.83664 -15.70577 -15.59990 -15.17391 -14.60402 -14.56770 -14.08344 -13.82319 -13.46672 -13.39675 -13.03406 -12.92635 -12.70175 -12.31059 -12.05727 -11.78075 -11.63645 -11.30420 -11.22286 -11.21428 -11.00737 -10.96682 -10.36879 -10.07578 -9.85627 -9.68052 -9.53014 -8.78015 -8.43452 -8.29925 -8.09820 -7.93846 -6.58947 -6.49124 -4.20412 1.23453 1.52377 1.58877 1.97096 3.08187 3.10542 3.11731 3.18430 3.35914 3.37784 3.52420 3.91036 4.03544 4.43071 4.80771 4.92021 5.02667 5.06186 5.08321 5.09719 5.20355 5.23045 5.29189 5.40749 5.43641 5.55909 5.62166 5.82657 6.00986 6.07311 6.31485 6.31980 6.34809 6.47465 6.53259 6.55640 6.78683 6.95734 7.03999 7.08584 7.40777 7.49295 7.54075 7.70234 8.12835 8.60037 8.96822 10.54048 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.003744 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.470982 B = 7475.902162 C = 9574.059207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.147 3.853 4 C -0.233 4.233 5 C -0.063 4.063 6 C -0.190 4.190 7 C 0.202 3.798 8 N -0.680 5.680 9 C 0.549 3.451 10 O -0.485 6.485 11 C -0.180 4.180 12 C -0.060 4.060 13 C -0.186 4.186 14 C -0.075 4.075 15 C -0.151 4.151 16 C -0.057 4.057 17 S 0.191 5.809 18 C -0.597 4.597 19 H 0.092 0.908 20 C 0.084 3.916 21 N -0.856 5.856 22 Si 0.920 3.080 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.155 4.155 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.276 0.724 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 12.311 9.728 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.101 3.899 4 C -0.253 4.253 5 C -0.082 4.082 6 C -0.211 4.211 7 C 0.106 3.894 8 N -0.326 5.326 9 C 0.340 3.660 10 O -0.360 6.360 11 C -0.196 4.196 12 C -0.080 4.080 13 C -0.210 4.210 14 C -0.097 4.097 15 C -0.176 4.176 16 C -0.177 4.177 17 S 0.457 5.543 18 C -0.743 4.743 19 H 0.109 0.891 20 C -0.127 4.127 21 N -0.488 5.488 22 Si 0.745 3.255 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.176 4.176 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.244 0.756 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.045 10.862 8.494 17.060 hybrid contribution 2.246 0.099 0.337 2.273 sum -7.800 10.961 8.831 16.092 Atomic orbital electron populations 1.23033 0.78698 1.03807 1.01089 1.86132 1.21063 1.26897 1.88491 1.18775 0.91803 0.84112 0.95232 1.21122 0.99759 0.92353 1.12047 1.20613 0.93711 0.96850 0.97045 1.20776 0.93937 0.96899 1.09464 1.17349 0.82922 0.92905 0.96187 1.43516 1.03848 1.31294 1.53976 1.18484 0.87440 0.80925 0.79121 1.90832 1.71723 1.35613 1.37804 1.18944 0.90714 1.02161 1.07783 1.20890 0.94818 0.96053 0.96208 1.20635 0.93543 1.01799 1.05048 1.21110 0.99042 0.94237 0.95317 1.21437 0.93680 1.00649 1.01834 1.23091 0.96780 0.98990 0.98817 1.84764 1.08813 1.14051 1.46715 1.24052 1.00285 1.17004 1.32986 0.89065 1.25109 0.97027 0.96695 0.93896 1.69966 1.22815 1.28622 1.27391 0.86135 0.81288 0.80002 0.78061 1.19812 1.20436 1.19196 1.20401 0.91683 0.98567 1.06915 0.88366 0.92855 0.92712 0.85754 0.85725 0.85760 0.75560 0.87115 0.86932 0.86899 0.84297 0.91422 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.64 10.49 -19.41 -0.20 -4.85 16 3 C 0.15 2.22 6.68 -39.25 -0.26 1.96 16 4 C -0.23 -2.82 9.04 -39.39 -0.36 -3.17 16 5 C -0.06 -0.70 10.03 -39.63 -0.40 -1.10 16 6 C -0.19 -2.30 9.96 -39.36 -0.39 -2.69 16 7 C 0.20 3.06 6.25 -83.75 -0.52 2.54 16 8 N -0.68 -10.15 5.28 -10.86 -0.06 -10.21 16 9 C 0.55 10.66 7.47 -12.54 -0.09 10.56 16 10 O -0.48 -11.30 11.55 5.26 0.06 -11.24 16 11 C -0.18 -3.50 5.89 -104.76 -0.62 -4.12 16 12 C -0.06 -0.91 9.53 -39.20 -0.37 -1.29 16 13 C -0.19 -2.76 10.02 -39.58 -0.40 -3.16 16 14 C -0.07 -1.24 10.03 -39.54 -0.40 -1.64 16 15 C -0.15 -3.10 9.20 -39.38 -0.36 -3.46 16 16 C -0.06 -1.27 6.14 -38.39 -0.24 -1.51 16 17 S 0.19 5.08 18.56 -107.50 -2.00 3.09 16 18 C -0.60 -16.32 8.98 30.94 0.28 -16.04 16 19 H 0.09 2.36 5.03 -52.49 -0.26 2.09 16 20 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 21 N -0.86 -24.60 13.22 55.49 0.73 -23.87 16 22 Si 0.92 20.56 29.55 -169.99 -5.02 15.53 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.15 -2.65 8.59 -39.24 -0.34 -2.99 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 29 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 30 H 0.12 1.17 6.29 -52.49 -0.33 0.84 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.41 4.56 6.87 -40.82 -0.28 4.28 16 34 H 0.11 1.24 6.42 -52.49 -0.34 0.90 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.14 2.97 5.09 -52.49 -0.27 2.70 16 38 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.15 2.90 6.51 -52.48 -0.34 2.56 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -32.86 343.30 -8.75 -41.61 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.86 Total: 7.40 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -3.57 Total: -22.64 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.68 Total: -34.08 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.14 Total: -16.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -2.00 Total: 3.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.86 -8.75 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.950 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds