Wall clock time and date at job start Tue Mar 31 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 116.99621 * 2 1 4 4 C 1.38804 * 120.02399 * 359.72108 * 3 2 1 5 5 C 1.38177 * 120.09201 * 179.74704 * 4 3 2 6 6 C 1.38167 * 120.12415 * 0.55851 * 5 4 3 7 7 C 1.38911 * 120.03488 * 359.69388 * 6 5 4 8 8 N 1.39833 * 120.04105 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00335 * 214.52259 * 8 7 6 10 10 O 1.21625 * 119.99950 * 5.46342 * 9 8 7 11 11 C 1.47396 * 120.00471 * 185.45340 * 9 8 7 12 12 C 1.39693 * 120.21444 * 0.02562 * 11 9 8 13 13 C 1.37800 * 119.93551 * 180.02562 * 12 11 9 14 14 C 1.38664 * 120.38236 * 0.02562 * 13 12 11 15 15 C 1.37909 * 120.44256 * 359.97438 * 14 13 12 16 16 C 1.39108 * 120.04972 * 359.68243 * 15 14 13 17 17 S 1.76199 * 120.18901 * 180.29802 * 16 15 14 18 18 C 1.76201 * 100.00130 * 8.44532 * 17 16 15 19 19 H 1.08001 * 120.00018 * 5.62949 * 18 17 16 20 20 C 1.38808 * 119.99823 * 185.62401 * 18 17 16 21 21 N 1.31548 * 120.00682 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99706 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46940 * 90.00465 * 22 20 18 24 24 H 1.48501 * 109.47193 * 210.00249 * 22 20 18 25 25 H 1.48499 * 109.47306 * 330.00627 * 22 20 18 26 26 C 1.38582 * 120.01763 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47503 * 300.00336 * 1 2 3 29 29 H 1.08998 * 109.46821 * 60.00314 * 1 2 3 30 30 H 1.07999 * 119.95310 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.94142 * 180.27183 * 5 4 3 32 32 H 1.07995 * 119.97911 * 179.72681 * 6 5 4 33 33 H 0.97003 * 120.00322 * 34.53535 * 8 7 6 34 34 H 1.07995 * 120.02895 * 0.02562 * 12 11 9 35 35 H 1.07998 * 119.80840 * 179.97438 * 13 12 11 36 36 H 1.08005 * 119.77659 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.97017 * 180.02562 * 15 14 13 38 38 H 0.96991 * 120.00723 * 179.97438 * 21 20 18 39 39 H 1.08004 * 120.05975 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3752 -0.0059 5 6 1.9161 3.6072 -0.0006 6 6 3.2956 3.6843 -0.0011 7 6 4.0569 2.5223 -0.0005 8 7 5.4530 2.6002 -0.0006 9 6 6.1795 1.6773 -0.6615 10 8 5.6215 0.8355 -1.3394 11 6 7.6501 1.6881 -0.5632 12 6 8.2956 2.6525 0.2143 13 6 9.6709 2.6576 0.3017 14 6 10.4204 1.7100 -0.3788 15 6 9.7993 0.7507 -1.1508 16 6 8.4118 0.7243 -1.2462 17 16 7.6142 -0.5044 -2.2252 18 6 8.9934 -1.5308 -2.6113 19 1 9.9564 -1.3316 -2.1651 20 6 8.8420 -2.5955 -3.4890 21 7 7.6690 -2.8380 -4.0330 22 14 10.3043 -3.6832 -3.8989 23 1 10.3686 -4.8104 -2.9342 24 1 10.1528 -4.2182 -5.2759 25 1 11.5541 -2.8858 -3.8124 26 6 3.4298 1.2839 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2119 2.3182 -0.0100 31 1 1.3258 4.5116 -0.0007 32 1 3.7822 4.6484 -0.0015 33 1 5.8988 3.3183 0.4753 34 1 7.7174 3.3935 0.7463 35 1 10.1678 3.4045 0.9030 36 1 11.4977 1.7233 -0.3037 37 1 10.3905 0.0160 -1.6773 38 1 7.5633 -3.5817 -4.6466 39 1 4.0193 0.3789 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021706751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:46 Heat of formation + Delta-G solvation = -31.627808 kcal Electronic energy + Delta-G solvation = -24316.551681 eV Core-core repulsion = 20701.121018 eV Total energy + Delta-G solvation = -3615.430663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75386 -40.65716 -39.24195 -38.18520 -35.59573 -34.79092 -32.47879 -31.82859 -31.51073 -30.00787 -28.07722 -27.86723 -25.34258 -23.79243 -23.50338 -22.74106 -21.49863 -20.11694 -19.46746 -18.68270 -17.55260 -17.21573 -17.10908 -16.98269 -16.76706 -16.61871 -16.05259 -15.91329 -15.60282 -15.36232 -14.78338 -14.55940 -14.49902 -14.35398 -13.78857 -13.48844 -13.34360 -13.22736 -13.00338 -12.90191 -12.69009 -12.57117 -12.23024 -12.07184 -12.01899 -11.52329 -11.44427 -11.31134 -11.12179 -10.43656 -9.97309 -9.88162 -9.40317 -9.01833 -8.50089 -8.47329 -6.27400 -0.11742 0.38850 0.48816 0.52257 1.24939 1.35353 1.43979 1.61292 1.91284 1.97425 2.20479 2.47525 2.80626 2.87686 3.02512 3.21647 3.81001 3.92705 3.98366 4.15121 4.25221 4.26124 4.31475 4.40101 4.47672 4.56027 4.59728 4.63066 4.70642 4.80483 4.83311 5.07555 5.30136 5.32682 5.36136 5.38522 5.44432 5.50290 5.55840 5.65633 5.91345 6.07729 6.13892 6.48160 6.50296 6.93551 7.21095 8.58402 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.003744 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.470982 B = 7475.902162 C = 9574.059207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.349 6.349 3 C 0.127 3.873 4 C -0.224 4.224 5 C -0.053 4.053 6 C -0.178 4.178 7 C 0.179 3.821 8 N -0.657 5.657 9 C 0.544 3.456 10 O -0.532 6.532 11 C -0.183 4.183 12 C -0.051 4.051 13 C -0.155 4.155 14 C -0.066 4.066 15 C -0.174 4.174 16 C -0.071 4.071 17 S 0.062 5.938 18 C -0.602 4.602 19 H 0.096 0.904 20 C 0.024 3.976 21 N -0.906 5.906 22 Si 0.995 3.005 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.255 1.255 26 C -0.194 4.194 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.427 0.573 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.276 0.724 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 17.161 12.452 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.264 6.264 3 C 0.082 3.918 4 C -0.243 4.243 5 C -0.071 4.071 6 C -0.199 4.199 7 C 0.084 3.916 8 N -0.305 5.305 9 C 0.334 3.666 10 O -0.410 6.410 11 C -0.197 4.197 12 C -0.071 4.071 13 C -0.178 4.178 14 C -0.087 4.087 15 C -0.199 4.199 16 C -0.189 4.189 17 S 0.321 5.679 18 C -0.748 4.748 19 H 0.114 0.886 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.816 3.184 23 H -0.192 1.192 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.215 4.215 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.268 0.732 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.418 15.833 11.314 21.619 hybrid contribution 1.970 -1.020 -0.201 2.228 sum -7.448 14.812 11.113 19.959 Atomic orbital electron populations 1.23360 0.76076 1.05368 1.02667 1.86086 1.23963 1.27641 1.88680 1.18978 0.91388 0.85441 0.96035 1.21517 1.01219 0.91505 1.10094 1.21196 0.93593 0.97945 0.94416 1.21173 0.94451 0.96830 1.07421 1.17581 0.82846 0.93359 0.97774 1.43182 1.03991 1.30479 1.52855 1.18718 0.87914 0.81001 0.78931 1.90843 1.72507 1.37691 1.39948 1.19328 0.90913 1.02077 1.07385 1.21479 0.95839 0.95241 0.94546 1.21351 0.93156 1.00807 1.02470 1.21584 1.01259 0.92606 0.93254 1.21447 0.92777 1.02141 1.03558 1.22984 0.97799 0.98870 0.99229 1.84996 1.11597 1.18868 1.52445 1.24235 0.99998 1.17473 1.33121 0.88645 1.26181 1.00048 0.98200 0.93754 1.70133 1.25291 1.29718 1.28913 0.85016 0.77604 0.77886 0.77935 1.19164 1.19758 1.17898 1.20305 0.92920 0.98006 1.10295 0.87099 0.90625 0.91521 0.82607 0.81141 0.82151 0.73183 0.81790 0.81306 0.83079 0.86326 0.91496 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.35 -11.04 10.49 -92.35 -0.97 -12.01 16 3 C 0.13 3.99 6.68 22.49 0.15 4.14 16 4 C -0.22 -4.88 9.04 22.39 0.20 -4.68 16 5 C -0.05 -0.95 10.03 22.24 0.22 -0.72 16 6 C -0.18 -3.71 9.96 22.41 0.22 -3.49 16 7 C 0.18 5.39 6.25 38.16 0.24 5.63 16 8 N -0.66 -19.10 5.28 -306.52 -1.62 -20.72 16 9 C 0.54 22.02 7.47 86.66 0.65 22.67 16 10 O -0.53 -27.46 11.55 -4.11 -0.05 -27.51 16 11 C -0.18 -7.11 5.89 -19.95 -0.12 -7.23 16 12 C -0.05 -1.34 9.53 22.52 0.21 -1.13 16 13 C -0.16 -3.65 10.02 22.27 0.22 -3.43 16 14 C -0.07 -1.94 10.03 22.29 0.22 -1.72 16 15 C -0.17 -7.22 9.20 22.40 0.21 -7.02 16 16 C -0.07 -3.34 6.14 23.04 0.14 -3.20 16 17 S 0.06 3.63 18.56 -56.49 -1.05 2.58 16 18 C -0.60 -35.70 8.98 67.96 0.61 -35.09 16 19 H 0.10 5.31 5.03 -2.91 -0.01 5.29 16 20 C 0.02 1.39 5.49 84.87 0.47 1.85 16 21 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 22 Si 0.99 44.54 29.55 68.60 2.03 46.57 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 26 C -0.19 -7.18 8.59 22.49 0.19 -6.99 16 27 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16 29 H 0.07 1.05 7.65 -2.39 -0.02 1.03 16 30 H 0.16 2.33 6.29 -2.91 -0.02 2.31 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.43 8.09 6.87 -92.71 -0.64 7.46 16 34 H 0.16 2.55 6.42 -2.91 -0.02 2.53 16 35 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.12 5.34 5.09 -2.91 -0.01 5.33 16 38 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.10 4.47 6.51 -2.91 -0.02 4.45 16 Total: -1.00 -86.78 343.30 4.07 -82.72 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.48 Total: 23.66 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 4.96 Total: -38.93 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.33 Total: -77.08 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.02 Total: -39.52 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.05 Total: 2.58 kcal Total: -86.78 4.07 -82.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.090 kcal (2) G-P(sol) polarization free energy of solvation -86.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds