Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99730 * 2 1 4 4 H 1.48503 * 109.46951 * 239.99944 * 3 2 1 5 5 H 1.48498 * 109.47448 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47085 * 120.00130 * 3 2 1 7 7 C 1.37875 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46988 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46885 * 180.02562 * 10 9 7 12 12 C 1.34768 * 116.99769 * 180.02562 * 11 10 9 13 13 O 1.21514 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.47360 * 119.99822 * 179.97438 * 12 11 10 15 15 C 1.39751 * 120.20833 * 355.04662 * 14 12 11 16 16 C 1.37770 * 119.91876 * 179.97438 * 15 14 12 17 17 C 1.38590 * 120.34268 * 359.97438 * 16 15 14 18 18 C 1.38003 * 120.42705 * 0.02562 * 17 16 15 19 19 C 1.38891 * 120.06869 * 0.27400 * 18 17 16 20 20 N 1.39127 * 120.17195 * 179.74627 * 19 18 17 21 21 C 1.34777 * 119.99893 * 34.93601 * 20 19 18 22 22 O 1.21702 * 119.99666 * 5.28619 * 21 20 19 23 23 C 1.46596 * 120.00082 * 185.27895 * 21 20 19 24 24 C 1.36584 * 125.98939 * 179.71942 * 23 21 20 25 25 C 1.40352 * 106.70057 * 179.85157 * 24 23 21 26 26 C 1.35139 * 107.12241 * 0.41173 * 25 24 23 27 27 O 1.33937 * 108.77392 * 359.74427 * 26 25 24 28 28 H 0.97005 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47021 * 60.00830 * 9 7 2 30 30 H 1.08996 * 109.47350 * 300.00221 * 9 7 2 31 31 H 1.08996 * 109.47214 * 60.00285 * 10 9 7 32 32 H 1.09004 * 109.47030 * 299.99980 * 10 9 7 33 33 H 1.08001 * 120.03978 * 359.95876 * 15 14 12 34 34 H 1.07992 * 119.82660 * 179.97438 * 16 15 14 35 35 H 1.07998 * 119.78782 * 180.02562 * 17 16 15 36 36 H 1.08003 * 119.96400 * 180.02562 * 18 17 16 37 37 H 0.96995 * 119.99749 * 214.94442 * 20 19 18 38 38 H 1.07991 * 126.64625 * 0.02562 * 24 23 21 39 39 H 1.08004 * 126.43977 * 180.17157 * 25 24 23 40 40 H 1.08003 * 125.61371 * 179.70705 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2533 -6.0497 -0.0007 13 8 3.4668 -5.9861 -0.0003 14 6 1.5843 -7.3627 -0.0007 15 6 0.1930 -7.4429 0.1031 16 6 -0.4264 -8.6736 0.1020 17 6 0.3233 -9.8345 -0.0022 18 6 1.6981 -9.7719 -0.1054 19 6 2.3409 -8.5407 -0.0998 20 7 3.7272 -8.4752 -0.1984 21 6 4.3918 -9.3700 -0.9562 22 8 3.7749 -10.1743 -1.6298 23 6 5.8577 -9.3742 -0.9691 24 6 6.6516 -10.2254 -1.6839 25 6 7.9799 -9.8709 -1.4014 26 6 7.9395 -8.8383 -0.5305 27 8 6.6591 -8.5419 -0.2725 28 1 -0.4851 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5570 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8720 -3.6042 -0.8906 33 1 -0.3960 -6.5413 0.1844 34 1 -1.5016 -8.7339 0.1827 35 1 -0.1715 -10.7945 -0.0026 36 1 2.2749 -10.6813 -0.1867 37 1 4.2152 -7.7858 0.2782 38 1 6.3212 -11.0158 -2.3414 39 1 8.8675 -10.3383 -1.8014 40 1 8.7983 -8.3353 -0.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021976851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = -76.497030 kcal Electronic energy + Delta-G solvation = -26588.758136 eV Core-core repulsion = 22528.628926 eV Total energy + Delta-G solvation = -4060.129210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.114 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.00295 -41.00978 -39.69429 -38.35840 -36.30014 -34.98537 -33.39532 -33.37354 -31.64516 -30.94678 -30.15951 -29.30565 -25.50675 -24.46016 -23.92985 -22.45557 -22.01150 -21.16415 -20.79651 -20.41896 -18.84026 -17.90468 -17.48665 -16.72943 -16.67092 -16.56754 -16.09444 -15.99451 -15.30657 -15.12242 -14.78458 -14.50611 -14.23515 -14.04960 -13.51780 -13.43240 -13.32318 -13.00044 -12.89935 -12.73299 -12.38991 -12.17408 -11.75704 -11.29502 -11.10475 -10.83525 -10.78220 -10.72814 -10.58181 -10.40067 -10.18454 -9.71979 -9.66298 -9.35009 -9.16603 -9.09192 -8.46802 -8.38106 -6.12914 -4.17594 0.44841 0.78142 1.22564 2.02800 2.33633 2.66509 2.81662 2.89732 3.04286 3.28280 3.32544 3.35918 3.70406 4.30423 4.36493 4.55200 4.62202 4.68681 4.80641 4.91571 5.17976 5.20128 5.23690 5.27057 5.32779 5.42092 5.54097 5.76394 5.94117 5.97933 6.02741 6.04152 6.05682 6.19450 6.29470 6.49585 6.58225 6.71036 6.80447 7.19617 7.50875 7.58468 7.69862 7.82718 8.07374 8.20741 8.87525 9.46910 10.98535 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.002878 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.427046 B = 9727.715863 C =11994.363921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.347 6.347 12 C 0.508 3.492 13 O -0.524 6.524 14 C -0.151 4.151 15 C -0.039 4.039 16 C -0.148 4.148 17 C -0.067 4.067 18 C -0.138 4.138 19 C 0.208 3.792 20 N -0.652 5.652 21 C 0.606 3.394 22 O -0.505 6.505 23 C -0.081 4.081 24 C -0.114 4.114 25 C -0.229 4.229 26 C 0.003 3.997 27 O -0.158 6.158 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.430 0.570 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.721 -23.285 0.595 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.262 6.262 12 C 0.354 3.646 13 O -0.416 6.416 14 C -0.154 4.154 15 C -0.058 4.058 16 C -0.166 4.166 17 C -0.086 4.086 18 C -0.158 4.158 19 C 0.111 3.889 20 N -0.302 5.302 21 C 0.394 3.606 22 O -0.382 6.382 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.248 4.248 26 C -0.068 4.068 27 O -0.052 6.052 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.275 0.725 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.424 -23.389 0.332 24.862 hybrid contribution 1.075 1.301 0.056 1.689 sum 9.499 -22.088 0.388 24.047 Atomic orbital electron populations 1.69958 1.06095 1.27157 1.49588 1.24976 0.94918 0.99380 0.94808 0.86527 0.79493 0.82461 0.78790 1.20052 1.21095 1.20056 1.20927 0.93137 0.90090 1.52462 0.92306 1.19170 0.94168 0.88915 0.98934 1.23716 0.96481 0.78382 1.01096 1.86591 1.41736 1.15529 1.82366 1.20933 0.85446 0.85493 0.72691 1.90620 1.15228 1.87959 1.47757 1.19101 0.94266 0.89259 1.12798 1.21459 0.92233 0.99274 0.92790 1.21172 1.00649 0.91894 1.02931 1.21268 0.93116 0.98981 0.95218 1.21074 0.95175 0.96277 1.03292 1.17609 0.82442 0.92700 0.96105 1.43694 1.05499 1.33224 1.47764 1.16629 0.83806 0.80907 0.79242 1.90893 1.66529 1.39180 1.41592 1.21792 0.90873 0.97520 1.03142 1.21993 0.92067 0.99751 0.99632 1.21881 0.98182 1.01091 1.03658 1.24528 0.84509 0.98382 0.99356 1.84139 1.16764 1.49114 1.55232 0.92608 0.95292 0.95286 0.92095 0.92167 0.83443 0.84833 0.84975 0.84139 0.72507 0.82031 0.82382 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.66 5.41 37.16 0.20 1.86 16 11 O -0.35 -6.89 9.48 -40.68 -0.39 -7.27 16 12 C 0.51 9.15 7.88 34.44 0.27 9.43 16 13 O -0.52 -9.97 13.69 -19.28 -0.26 -10.23 16 14 C -0.15 -2.26 5.89 -104.82 -0.62 -2.88 16 15 C -0.04 -0.49 9.61 -39.19 -0.38 -0.87 16 16 C -0.15 -1.49 10.02 -39.62 -0.40 -1.88 16 17 C -0.07 -0.66 10.03 -39.54 -0.40 -1.05 16 18 C -0.14 -1.66 8.63 -39.43 -0.34 -2.01 16 19 C 0.21 2.94 6.25 -83.51 -0.52 2.42 16 20 N -0.65 -9.25 4.67 -10.88 -0.05 -9.30 16 21 C 0.61 8.42 7.50 -12.89 -0.10 8.32 16 22 O -0.51 -7.71 14.65 5.19 0.08 -7.63 16 23 C -0.08 -0.99 7.13 -36.81 -0.26 -1.25 16 24 C -0.11 -1.15 10.62 -39.38 -0.42 -1.57 16 25 C -0.23 -1.79 10.87 -39.89 -0.43 -2.22 16 26 C 0.00 0.02 12.08 29.63 0.36 0.38 16 27 O -0.16 -1.79 10.41 4.95 0.05 -1.74 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.15 1.82 7.62 -52.49 -0.40 1.42 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.65 6.53 -52.48 -0.34 1.31 16 37 H 0.43 6.24 6.10 -40.82 -0.25 5.99 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.21 0.78 8.06 -52.48 -0.42 0.35 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -32.90 358.03 -7.39 -40.29 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.34 Total: 3.91 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.59 Total: -4.22 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.69 Total: -34.74 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.52 Total: -26.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.90 -7.39 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021976851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.210 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds