Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99730 * 2 1 4 4 H 1.48503 * 109.46951 * 239.99944 * 3 2 1 5 5 H 1.48498 * 109.47448 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47085 * 120.00130 * 3 2 1 7 7 C 1.37875 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46988 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46885 * 180.02562 * 10 9 7 12 12 C 1.34768 * 116.99769 * 180.02562 * 11 10 9 13 13 O 1.21514 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.47360 * 119.99822 * 179.97438 * 12 11 10 15 15 C 1.39751 * 120.20833 * 355.04662 * 14 12 11 16 16 C 1.37770 * 119.91876 * 179.97438 * 15 14 12 17 17 C 1.38590 * 120.34268 * 359.97438 * 16 15 14 18 18 C 1.38003 * 120.42705 * 0.02562 * 17 16 15 19 19 C 1.38891 * 120.06869 * 0.27400 * 18 17 16 20 20 N 1.39127 * 120.17195 * 179.74627 * 19 18 17 21 21 C 1.34777 * 119.99893 * 34.93601 * 20 19 18 22 22 O 1.21702 * 119.99666 * 5.28619 * 21 20 19 23 23 C 1.46596 * 120.00082 * 185.27895 * 21 20 19 24 24 C 1.36584 * 125.98939 * 179.71942 * 23 21 20 25 25 C 1.40352 * 106.70057 * 179.85157 * 24 23 21 26 26 C 1.35139 * 107.12241 * 0.41173 * 25 24 23 27 27 O 1.33937 * 108.77392 * 359.74427 * 26 25 24 28 28 H 0.97005 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47021 * 60.00830 * 9 7 2 30 30 H 1.08996 * 109.47350 * 300.00221 * 9 7 2 31 31 H 1.08996 * 109.47214 * 60.00285 * 10 9 7 32 32 H 1.09004 * 109.47030 * 299.99980 * 10 9 7 33 33 H 1.08001 * 120.03978 * 359.95876 * 15 14 12 34 34 H 1.07992 * 119.82660 * 179.97438 * 16 15 14 35 35 H 1.07998 * 119.78782 * 180.02562 * 17 16 15 36 36 H 1.08003 * 119.96400 * 180.02562 * 18 17 16 37 37 H 0.96995 * 119.99749 * 214.94442 * 20 19 18 38 38 H 1.07991 * 126.64625 * 0.02562 * 24 23 21 39 39 H 1.08004 * 126.43977 * 180.17157 * 25 24 23 40 40 H 1.08003 * 125.61371 * 179.70705 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2533 -6.0497 -0.0007 13 8 3.4668 -5.9861 -0.0003 14 6 1.5843 -7.3627 -0.0007 15 6 0.1930 -7.4429 0.1031 16 6 -0.4264 -8.6736 0.1020 17 6 0.3233 -9.8345 -0.0022 18 6 1.6981 -9.7719 -0.1054 19 6 2.3409 -8.5407 -0.0998 20 7 3.7272 -8.4752 -0.1984 21 6 4.3918 -9.3700 -0.9562 22 8 3.7749 -10.1743 -1.6298 23 6 5.8577 -9.3742 -0.9691 24 6 6.6516 -10.2254 -1.6839 25 6 7.9799 -9.8709 -1.4014 26 6 7.9395 -8.8383 -0.5305 27 8 6.6591 -8.5419 -0.2725 28 1 -0.4851 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5570 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8720 -3.6042 -0.8906 33 1 -0.3960 -6.5413 0.1844 34 1 -1.5016 -8.7339 0.1827 35 1 -0.1715 -10.7945 -0.0026 36 1 2.2749 -10.6813 -0.1867 37 1 4.2152 -7.7858 0.2782 38 1 6.3212 -11.0158 -2.3414 39 1 8.8675 -10.3383 -1.8014 40 1 8.7983 -8.3353 -0.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021976851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = -95.689701 kcal Electronic energy + Delta-G solvation = -26589.590392 eV Core-core repulsion = 22528.628926 eV Total energy + Delta-G solvation = -4060.961466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.75633 -42.15383 -41.01555 -39.40906 -37.80593 -36.06759 -35.45424 -34.12225 -32.90424 -31.96233 -31.80581 -30.17130 -27.31316 -25.59513 -25.07059 -23.50801 -22.91679 -22.68972 -22.15046 -21.35185 -19.74911 -19.26413 -18.65604 -18.25145 -17.78400 -17.63733 -17.47831 -17.41120 -16.56967 -16.31894 -16.05518 -15.72221 -15.28456 -15.21124 -15.01847 -14.41637 -14.35105 -14.19785 -13.99864 -13.86847 -13.62012 -13.24380 -13.16692 -13.02902 -12.68042 -12.60919 -12.58602 -11.97609 -11.78236 -11.64096 -11.53903 -11.48130 -11.23923 -11.11664 -10.62175 -10.15949 -9.84908 -9.35445 -8.28171 -6.41654 -0.56482 -0.14100 0.31691 1.34722 1.38988 1.40347 1.43986 1.51017 1.52487 1.61861 1.89632 1.99361 2.39030 2.70128 3.06294 3.49053 3.53834 3.73128 3.88844 3.99313 4.04509 4.17574 4.18523 4.26905 4.30598 4.33293 4.53233 4.65012 4.81775 4.83601 4.87362 5.01900 5.13787 5.16210 5.28549 5.34460 5.39837 5.44071 5.44275 5.70707 5.73804 5.83350 6.04388 6.15805 6.54402 6.68265 6.71717 7.28116 8.84259 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.002878 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.427046 B = 9727.715863 C =11994.363921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.033 3.967 10 C 0.091 3.909 11 O -0.354 6.354 12 C 0.504 3.496 13 O -0.540 6.540 14 C -0.176 4.176 15 C -0.046 4.046 16 C -0.136 4.136 17 C -0.048 4.048 18 C -0.145 4.145 19 C 0.192 3.808 20 N -0.657 5.657 21 C 0.603 3.397 22 O -0.529 6.529 23 C -0.122 4.122 24 C -0.108 4.108 25 C -0.231 4.231 26 C 0.012 3.988 27 O -0.179 6.179 28 H 0.268 0.732 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.142 0.858 37 H 0.426 0.574 38 H 0.170 0.830 39 H 0.191 0.809 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -24.415 0.641 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.018 3.982 11 O -0.269 6.269 12 C 0.352 3.648 13 O -0.433 6.433 14 C -0.179 4.179 15 C -0.065 4.065 16 C -0.154 4.154 17 C -0.066 4.066 18 C -0.165 4.165 19 C 0.096 3.904 20 N -0.305 5.305 21 C 0.394 3.606 22 O -0.408 6.408 23 C -0.173 4.173 24 C -0.128 4.128 25 C -0.249 4.249 26 C -0.057 4.057 27 O -0.074 6.074 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.191 0.809 36 H 0.160 0.840 37 H 0.269 0.731 38 H 0.187 0.813 39 H 0.208 0.792 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.429 -24.544 0.380 26.296 hybrid contribution 0.787 1.507 0.044 1.701 sum 10.216 -23.037 0.424 25.205 Atomic orbital electron populations 1.70083 1.07807 1.28394 1.50223 1.25955 0.95842 1.03383 0.94011 0.85382 0.78212 0.77436 0.79321 1.19124 1.20439 1.18960 1.21336 0.93710 0.91200 1.52749 0.91678 1.18969 0.94291 0.90422 0.96782 1.23235 0.95183 0.78603 1.01129 1.86567 1.41827 1.15476 1.83079 1.21529 0.85476 0.85779 0.71972 1.90603 1.15894 1.88129 1.48649 1.19034 0.95353 0.87610 1.15938 1.21604 0.91219 1.00690 0.92955 1.21561 1.02398 0.90578 1.00837 1.21751 0.92027 1.00719 0.92096 1.21259 0.96413 0.95352 1.03477 1.17882 0.82550 0.93224 0.96787 1.43744 1.05742 1.33209 1.47841 1.16892 0.84720 0.80385 0.78647 1.90847 1.67338 1.40018 1.42556 1.21637 0.90352 0.99620 1.05729 1.22326 0.93069 0.98945 0.98480 1.22276 0.98113 1.01052 1.03485 1.25490 0.84112 0.97883 0.98241 1.84126 1.18125 1.49502 1.55684 0.92280 0.97562 0.97266 0.91758 0.92322 0.83679 0.81214 0.80914 0.83981 0.73092 0.81271 0.79205 0.73123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.75 5.35 29.85 0.16 1.91 16 10 C 0.09 4.17 5.41 71.98 0.39 4.56 16 11 O -0.35 -14.67 9.48 -56.79 -0.54 -15.21 16 12 C 0.50 19.00 7.88 70.22 0.55 19.56 16 13 O -0.54 -21.54 13.69 19.79 0.27 -21.27 16 14 C -0.18 -5.43 5.89 -20.00 -0.12 -5.54 16 15 C -0.05 -1.15 9.61 22.52 0.22 -0.93 16 16 C -0.14 -2.37 10.02 22.24 0.22 -2.14 16 17 C -0.05 -0.80 10.03 22.30 0.22 -0.57 16 18 C -0.14 -3.38 8.63 22.37 0.19 -3.18 16 19 C 0.19 5.56 6.25 38.66 0.24 5.81 16 20 N -0.66 -19.63 4.67 -306.56 -1.43 -21.06 16 21 C 0.60 17.53 7.50 86.42 0.65 18.18 16 22 O -0.53 -16.62 14.65 -4.35 -0.06 -16.69 16 23 C -0.12 -3.04 7.13 24.07 0.17 -2.87 16 24 C -0.11 -2.10 10.62 22.40 0.24 -1.86 16 25 C -0.23 -3.09 10.87 22.07 0.24 -2.85 16 26 C 0.01 0.17 12.08 67.11 0.81 0.98 16 27 O -0.18 -4.05 10.41 -5.19 -0.05 -4.11 16 28 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.15 3.61 7.62 -2.91 -0.02 3.59 16 34 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.14 3.27 6.53 -2.91 -0.02 3.25 16 37 H 0.43 13.21 6.10 -92.71 -0.57 12.64 16 38 H 0.17 2.89 8.06 -2.92 -0.02 2.87 16 39 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.25 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -74.06 358.03 5.91 -68.15 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.53 Total: 18.99 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 4.89 Total: 0.78 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.15 Total: -76.17 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -0.39 Total: -57.28 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.06 5.91 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021976851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.535 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds