Wall clock time and date at job start Tue Mar 31 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47413 * 2 1 4 4 C 1.38037 * 119.55616 * 90.00022 * 3 2 1 5 5 N 1.32492 * 121.15433 * 0.04965 * 4 3 2 6 6 C 1.31630 * 121.72170 * 180.02562 * 5 4 3 7 7 C 1.40024 * 121.03318 * 359.97438 * 6 5 4 8 8 C 1.39795 * 119.57025 * 359.90207 * 7 6 5 9 9 C 1.39115 * 117.60194 * 0.12170 * 8 7 6 10 10 C 1.47214 * 121.84152 * 179.97438 * 9 8 7 11 11 O 1.21594 * 120.93755 * 0.02796 * 10 9 8 12 12 N 1.35146 * 118.12539 * 180.02562 * 10 9 8 13 13 C 1.37323 * 119.47771 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00070 * 138.70106 * 13 12 10 15 15 C 1.38985 * 120.00062 * 318.69803 * 13 12 10 16 16 N 1.31330 * 119.99875 * 340.19545 * 15 13 12 17 17 Si 1.86797 * 120.00009 * 160.19484 * 15 13 12 18 18 H 1.48497 * 109.47382 * 90.00477 * 17 15 13 19 19 H 1.48504 * 109.47027 * 210.00128 * 17 15 13 20 20 H 1.48504 * 109.47270 * 329.99760 * 17 15 13 21 21 C 1.34217 * 121.04503 * 0.02562 * 12 10 9 22 22 O 1.21540 * 118.49693 * 179.97438 * 21 12 10 23 23 C 1.50081 * 121.88653 * 180.18824 * 8 7 6 24 24 C 1.52707 * 111.21993 * 337.88251 * 23 8 7 25 25 C 1.53437 * 109.40775 * 54.12562 * 24 23 8 26 26 C 1.47192 * 120.42658 * 179.84031 * 7 6 5 27 27 O 1.21275 * 121.20093 * 348.86430 * 26 7 6 28 28 H 1.08999 * 109.47638 * 59.99658 * 1 2 3 29 29 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47054 * 299.99751 * 1 2 3 31 31 H 1.09004 * 109.47054 * 240.00249 * 2 1 3 32 32 H 1.08997 * 109.47299 * 120.00757 * 2 1 3 33 33 H 1.08003 * 119.48460 * 180.02562 * 6 5 4 34 34 H 0.97006 * 120.00051 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.13305 * 217.43550 * 23 8 7 36 36 H 1.08999 * 109.08239 * 98.29760 * 23 8 7 37 37 H 1.08996 * 109.48420 * 294.14596 * 24 23 8 38 38 H 1.08996 * 109.48499 * 174.10510 * 24 23 8 39 39 H 1.09001 * 109.86118 * 176.59087 * 25 24 23 40 40 H 1.09002 * 109.86069 * 55.57556 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2454 2.0231 1.2007 5 7 2.0302 1.4117 2.3563 6 6 2.2424 2.0133 3.5077 7 6 2.7079 3.3329 3.5576 8 6 2.9537 4.0233 2.3671 9 6 2.7163 3.3521 1.1720 10 6 2.9429 3.9900 -0.1353 11 8 3.3488 5.1337 -0.2108 12 7 2.6870 3.2685 -1.2491 13 6 2.8882 3.8364 -2.4831 14 1 3.3382 3.2583 -3.2767 15 6 2.5127 5.1551 -2.7108 16 7 1.6382 5.7345 -1.9208 17 14 3.2520 6.1031 -4.1405 18 1 2.4084 5.9154 -5.3480 19 1 3.3124 7.5470 -3.7985 20 1 4.6231 5.6009 -4.4114 21 6 2.2385 2.0061 -1.1682 22 8 2.0231 1.4001 -2.1995 23 6 3.4570 5.4372 2.3600 24 6 3.1396 6.1435 3.6762 25 6 3.6842 5.3123 4.8452 26 6 2.9374 3.9940 4.8526 27 8 2.5471 3.4988 5.8886 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0553 1.4804 4.4283 34 1 1.3764 6.6550 -2.0795 35 1 2.9858 5.9800 1.5407 36 1 4.5366 5.4304 2.2097 37 1 2.0599 6.2521 3.7793 38 1 3.6064 7.1285 3.6820 39 1 3.5150 5.8389 5.7845 40 1 4.7505 5.1331 4.7071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022610544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:52 Heat of formation + Delta-G solvation = -43.102848 kcal Electronic energy + Delta-G solvation = -29190.938264 eV Core-core repulsion = 25164.549886 eV Total energy + Delta-G solvation = -4026.388378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69620 -40.13055 -38.49050 -38.20899 -36.06766 -35.42559 -34.18777 -32.81005 -31.56062 -31.05475 -29.67563 -28.03762 -26.21026 -24.22805 -23.74234 -23.51650 -22.37684 -20.89114 -20.50091 -18.73040 -18.30813 -17.63619 -16.88875 -16.15293 -15.80636 -15.59939 -15.30878 -15.20167 -14.78359 -14.51506 -14.11209 -14.01542 -13.75749 -13.73755 -13.45882 -13.34398 -13.16841 -12.91993 -12.56497 -12.31224 -11.85508 -11.77899 -11.65976 -11.21685 -11.14179 -11.04525 -11.00322 -10.82835 -10.49494 -10.30925 -10.20795 -9.76995 -9.43250 -9.35179 -9.29007 -8.74961 -8.15964 -7.93542 -6.60553 -4.38955 0.58565 1.03753 2.33504 2.61653 3.01977 3.14250 3.20907 3.26559 3.58008 3.87527 4.04443 4.27098 4.32330 4.46787 4.56430 4.65998 4.85024 4.94318 5.03750 5.06751 5.27659 5.34907 5.36527 5.43654 5.47599 5.59992 5.66634 5.68996 5.78631 5.88366 5.95889 6.06506 6.15227 6.19086 6.26443 6.42242 6.60499 6.71479 6.94911 7.31673 7.50967 7.75840 7.85008 8.10099 8.53417 8.77023 9.05970 9.48203 10.49549 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.005954 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.899347 B = 4701.638543 C = 6794.696276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.524 5.524 4 C 0.420 3.580 5 N -0.531 5.531 6 C 0.218 3.782 7 C -0.287 4.287 8 C 0.108 3.892 9 C -0.239 4.239 10 C 0.534 3.466 11 O -0.472 6.472 12 N -0.380 5.380 13 C -0.347 4.347 14 H 0.106 0.894 15 C 0.074 3.926 16 N -0.822 5.822 17 Si 0.935 3.065 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.663 3.337 22 O -0.547 6.547 23 C -0.103 4.103 24 C -0.113 4.113 25 C -0.165 4.165 26 C 0.418 3.582 27 O -0.467 6.467 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.276 0.724 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -2.526 10.490 11.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.247 5.247 4 C 0.185 3.815 5 N -0.247 5.247 6 C 0.055 3.945 7 C -0.293 4.293 8 C 0.100 3.900 9 C -0.249 4.249 10 C 0.325 3.675 11 O -0.346 6.346 12 N -0.109 5.109 13 C -0.473 4.473 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.453 5.453 17 Si 0.760 3.240 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.189 1.189 21 C 0.369 3.631 22 O -0.422 6.422 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.202 4.202 26 C 0.296 3.704 27 O -0.343 6.343 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.188 0.812 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.678 -3.211 10.173 10.799 hybrid contribution 0.317 1.158 -0.585 1.336 sum 1.995 -2.052 9.587 10.006 Atomic orbital electron populations 1.22053 0.95029 1.02286 1.02704 1.21605 0.95271 0.79505 1.04195 1.45107 1.61549 1.15406 1.02677 1.18715 0.88358 0.87746 0.86632 1.67210 1.23222 1.37629 0.96634 1.22889 0.86464 0.90275 0.94836 1.20912 1.15141 0.98010 0.95220 1.20039 0.85273 0.95184 0.89538 1.20521 1.13152 0.94804 0.96452 1.17741 0.80610 0.86823 0.82299 1.90578 1.42849 1.15663 1.85480 1.41830 1.51058 1.09274 1.08784 1.19416 1.43192 0.96443 0.88218 0.87628 1.25379 0.93243 0.97275 0.98065 1.69860 1.24474 1.13746 1.37253 0.85838 0.79913 0.78502 0.79787 1.20108 1.20385 1.18897 1.16439 0.79940 0.84359 0.82376 1.90829 1.56100 1.64354 1.30915 1.20857 1.02877 0.90535 0.99653 1.21576 1.01865 0.99034 0.92566 1.22343 1.01630 0.95110 1.01153 1.22313 0.75342 0.86082 0.86618 1.90510 1.43309 1.65573 1.34932 0.91949 0.91197 0.92364 0.88808 0.88723 0.81151 0.91430 0.85701 0.88589 0.91237 0.89872 0.88927 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.12 1.84 5.80 -4.04 -0.02 1.81 16 3 N -0.52 -10.42 2.63 -120.84 -0.32 -10.74 16 4 C 0.42 7.98 7.38 -155.15 -1.14 6.84 16 5 N -0.53 -8.70 9.17 -11.74 -0.11 -8.81 16 6 C 0.22 3.18 10.77 -16.97 -0.18 2.99 16 7 C -0.29 -4.26 5.82 -105.01 -0.61 -4.87 16 8 C 0.11 1.80 5.81 -104.01 -0.60 1.19 16 9 C -0.24 -4.81 5.88 -104.87 -0.62 -5.43 16 10 C 0.53 12.86 6.88 -12.45 -0.09 12.77 16 11 O -0.47 -11.87 11.28 5.28 0.06 -11.81 16 12 N -0.38 -9.81 2.63 -66.93 -0.18 -9.98 16 13 C -0.35 -9.44 8.54 -14.81 -0.13 -9.57 16 14 H 0.11 2.86 7.77 -52.48 -0.41 2.45 16 15 C 0.07 1.94 4.33 -17.49 -0.08 1.86 16 16 N -0.82 -22.36 11.56 55.50 0.64 -21.72 16 17 Si 0.93 20.40 29.60 -169.99 -5.03 15.37 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 C 0.66 15.90 8.05 -87.84 -0.71 15.19 16 22 O -0.55 -14.02 15.42 5.33 0.08 -13.94 16 23 C -0.10 -1.53 4.66 -28.33 -0.13 -1.66 16 24 C -0.11 -1.26 5.90 -26.66 -0.16 -1.42 16 25 C -0.16 -1.70 6.18 -27.25 -0.17 -1.87 16 26 C 0.42 5.57 6.89 -30.27 -0.21 5.36 16 27 O -0.47 -7.11 17.30 5.56 0.10 -7.01 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 32 H 0.09 1.31 7.38 -51.93 -0.38 0.93 16 33 H 0.17 2.05 7.73 -52.48 -0.41 1.65 16 34 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.13 2.26 5.92 -51.93 -0.31 1.95 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -31.40 333.60 -8.59 -39.99 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.40 Total: 2.40 kcal Atomic # 6 Polarization: 25.69 SS G_CDS: -4.46 Total: 21.22 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.04 Total: -51.25 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: 0.24 Total: -32.76 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.40 -8.59 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022610544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.110 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds