Wall clock time and date at job start Tue Mar 31 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38319 * 119.96416 * 2 1 4 4 C 1.38284 * 120.15761 * 179.97438 * 3 2 1 5 5 C 1.38104 * 120.07607 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.03932 * 180.02562 * 5 4 3 7 7 C 1.38931 * 119.92155 * 0.02562 * 5 4 3 8 8 S 1.76204 * 120.07328 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00290 * 76.02470 * 8 7 5 10 10 N 1.32496 * 119.83619 * 5.50703 * 9 8 7 11 11 C 1.31805 * 121.77470 * 179.97438 * 10 9 8 12 12 C 1.38453 * 121.24950 * 0.02562 * 11 10 9 13 13 C 1.38292 * 119.52848 * 359.97438 * 12 11 10 14 14 C 1.40083 * 118.36597 * 359.74101 * 13 12 11 15 15 C 1.47195 * 120.62520 * 180.24433 * 14 13 12 16 16 O 1.21566 * 120.00059 * 180.27585 * 15 14 13 17 17 O 1.34789 * 119.99867 * 0.28199 * 15 14 13 18 18 C 1.34862 * 117.00262 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99397 * 359.97438 * 18 17 15 20 20 C 1.38789 * 120.00457 * 180.02562 * 18 17 15 21 21 N 1.31432 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00336 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47576 * 119.99884 * 22 20 18 25 25 H 1.48499 * 109.47339 * 239.99968 * 22 20 18 26 26 C 1.38070 * 119.96081 * 179.72231 * 2 1 3 27 27 H 1.09002 * 109.47285 * 90.00028 * 1 2 3 28 28 H 1.09002 * 109.46980 * 209.99761 * 1 2 3 29 29 H 1.08994 * 109.47093 * 330.00150 * 1 2 3 30 30 H 1.08005 * 119.92098 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.96022 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47253 * 89.99154 * 6 5 4 33 33 H 1.09001 * 109.46560 * 209.99480 * 6 5 4 34 34 H 1.08993 * 109.46843 * 329.99393 * 6 5 4 35 35 H 1.07996 * 119.37747 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.23267 * 179.97438 * 12 11 10 37 37 H 1.07996 * 120.81901 * 180.02562 * 13 12 11 38 38 H 0.96998 * 120.00367 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.03651 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5806 1.2030 0.0005 5 6 4.2768 0.0102 0.0016 6 6 5.7838 0.0163 0.0028 7 6 3.5861 -1.1953 0.0016 8 16 4.4703 -2.7194 0.0037 9 6 4.9844 -2.7727 1.6882 10 7 4.5601 -1.8476 2.5365 11 6 4.9201 -1.8511 3.8044 12 6 5.7629 -2.8268 4.3090 13 6 6.2373 -3.8183 3.4698 14 6 5.8385 -3.8008 2.1270 15 6 6.3093 -4.8351 1.1914 16 8 5.9600 -4.8061 0.0274 17 8 7.1276 -5.8143 1.6254 18 6 7.5224 -6.7297 0.7172 19 1 7.1823 -6.6573 -0.3053 20 6 8.3647 -7.7654 1.0967 21 7 8.7782 -7.8538 2.3412 22 14 8.9110 -9.0338 -0.1611 23 1 8.3103 -8.7127 -1.4808 24 1 10.3916 -9.0145 -0.2728 25 1 8.4647 -10.3828 0.2703 26 6 2.1965 -1.1962 0.0058 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6559 2.1326 -0.0004 31 1 4.1169 2.1405 0.0001 32 1 6.1464 0.0184 1.0307 33 1 6.1510 -0.8725 -0.5103 34 1 6.1439 0.9074 -0.5112 35 1 4.5514 -1.0778 4.4620 36 1 6.0477 -2.8137 5.3507 37 1 6.8954 -4.5897 3.8414 38 1 9.3672 -8.5774 2.6064 39 1 1.6565 -2.1314 0.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022859480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:09 Heat of formation + Delta-G solvation = -22.225583 kcal Electronic energy + Delta-G solvation = -24648.168227 eV Core-core repulsion = 21033.145274 eV Total energy + Delta-G solvation = -3615.022952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.087 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.92679 -39.27506 -38.57659 -35.31617 -33.87289 -32.55658 -32.10644 -31.11763 -30.80595 -29.23793 -25.90661 -24.84841 -24.11762 -23.41933 -22.80021 -20.98239 -20.50015 -17.91882 -17.78846 -17.08421 -16.13262 -15.98686 -15.65504 -15.41236 -14.99194 -14.77651 -14.39720 -14.33238 -14.02154 -13.68546 -13.58250 -13.27434 -13.00984 -12.76697 -12.66529 -12.64122 -12.02462 -11.86634 -11.71245 -11.66638 -11.34371 -11.25822 -11.09583 -10.61711 -10.52513 -10.39722 -9.94850 -9.83422 -9.44780 -9.31129 -8.94246 -8.71393 -8.69532 -8.36112 -7.17870 -6.55967 -4.17168 0.90332 1.06422 1.41860 1.45497 2.13070 2.66185 3.06026 3.13827 3.21447 3.43739 3.77143 3.81784 4.17309 4.37460 4.80437 4.83072 4.85025 5.02275 5.05147 5.11720 5.18971 5.26129 5.29771 5.42924 5.49418 5.52456 5.58149 5.63128 5.73963 5.79529 5.96081 6.02395 6.21725 6.29353 6.34210 6.37252 6.54887 6.61600 6.63771 6.81443 7.00853 7.28212 7.81099 7.93655 8.56233 8.92730 9.68950 10.61353 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.003322 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.619728 B = 8427.811617 C = 9083.086469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.096 4.096 4 C -0.131 4.131 5 C -0.024 4.024 6 C -0.127 4.127 7 C -0.160 4.160 8 S 0.142 5.858 9 C 0.132 3.868 10 N -0.483 5.483 11 C 0.120 3.880 12 C -0.193 4.193 13 C -0.015 4.015 14 C -0.130 4.130 15 C 0.429 3.571 16 O -0.528 6.528 17 O -0.200 6.200 18 C -0.371 4.371 19 H 0.102 0.898 20 C 0.041 3.959 21 N -0.856 5.856 22 Si 0.945 3.055 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.059 4.059 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.272 0.728 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 15.392 0.753 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.150 4.150 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.271 4.271 8 S 0.391 5.609 9 C -0.116 4.116 10 N -0.195 5.195 11 C -0.041 4.041 12 C -0.217 4.217 13 C -0.043 4.043 14 C -0.140 4.140 15 C 0.277 3.723 16 O -0.427 6.427 17 O -0.107 6.107 18 C -0.447 4.447 19 H 0.119 0.881 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.770 3.230 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.079 4.079 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.082 0.918 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.329 15.086 -0.784 18.300 hybrid contribution 0.637 -0.282 1.160 1.353 sum -9.692 14.804 0.375 17.698 Atomic orbital electron populations 1.20738 0.91279 1.02574 1.02059 1.19850 0.95895 0.93109 1.02212 1.21037 0.94129 0.97234 0.99084 1.20945 0.94102 0.97250 1.02734 1.20014 0.95942 0.92114 0.94602 1.21021 0.91134 1.03553 1.02719 1.22647 0.97127 1.00160 1.07118 1.86260 1.58030 1.16362 1.00256 1.23636 0.95232 0.92433 1.00335 1.68207 1.23750 1.23754 1.03777 1.22806 0.93204 0.96625 0.91507 1.22010 1.01435 0.96930 1.01320 1.21971 0.94394 0.96531 0.91361 1.19940 1.01913 0.97149 0.95019 1.20339 0.81800 0.83546 0.86614 1.90548 1.58530 1.74957 1.18675 1.83890 1.53087 1.32336 1.41343 1.21423 1.28055 1.03062 0.92122 0.88087 1.25409 0.95803 0.97719 0.97443 1.69981 1.31360 1.31592 1.16328 0.85563 0.78579 0.79131 0.79764 1.18683 1.20031 1.20040 1.21268 0.92746 0.97637 0.96294 0.91444 0.91633 0.91807 0.86334 0.86181 0.91130 0.89851 0.91652 0.82796 0.84491 0.82799 0.91828 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 2 C -0.11 -1.32 5.88 -104.66 -0.62 -1.93 16 3 C -0.10 -1.10 9.70 -39.53 -0.38 -1.48 16 4 C -0.13 -1.61 9.70 -39.61 -0.38 -1.99 16 5 C -0.02 -0.35 5.74 -104.41 -0.60 -0.95 16 6 C -0.13 -1.76 9.44 36.01 0.34 -1.42 16 7 C -0.16 -2.55 4.66 -39.06 -0.18 -2.73 16 8 S 0.14 2.66 17.18 -107.50 -1.85 0.82 16 9 C 0.13 2.51 6.85 -16.35 -0.11 2.40 16 10 N -0.48 -8.14 9.03 -11.65 -0.11 -8.24 16 11 C 0.12 1.68 11.16 -17.48 -0.20 1.49 16 12 C -0.19 -2.70 10.09 -39.48 -0.40 -3.10 16 13 C -0.02 -0.27 9.73 -38.87 -0.38 -0.65 16 14 C -0.13 -2.69 5.91 -104.65 -0.62 -3.31 16 15 C 0.43 10.75 7.82 34.37 0.27 11.02 16 16 O -0.53 -13.81 13.05 -19.32 -0.25 -14.07 16 17 O -0.20 -5.58 9.06 -21.82 -0.20 -5.78 16 18 C -0.37 -10.61 9.65 30.94 0.30 -10.31 16 19 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 21 N -0.86 -24.05 13.67 55.49 0.76 -23.29 16 22 Si 0.95 20.61 29.55 -169.99 -5.02 15.58 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 C -0.06 -0.84 9.44 -39.37 -0.37 -1.22 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.28 6.78 -51.93 -0.35 0.92 16 34 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.15 2.79 7.70 -52.49 -0.40 2.39 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -32.06 354.59 -8.86 -40.92 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.47 Total: 2.49 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.07 Total: -13.78 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.65 Total: -31.53 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.45 Total: -19.84 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.85 Total: 0.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.06 -8.86 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022859480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.692 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds