Wall clock time and date at job start Tue Mar 31 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48502 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46723 * 299.99607 * 3 2 1 6 6 H 1.48497 * 109.47173 * 59.99574 * 3 2 1 7 7 C 1.39908 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99936 * 175.55419 * 7 2 1 9 9 C 1.41151 * 120.00071 * 355.55453 * 7 2 1 10 10 C 1.40861 * 120.16518 * 214.78443 * 9 7 2 11 11 C 1.36375 * 119.83011 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16746 * 359.97438 * 11 10 9 13 13 N 1.39242 * 119.83483 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99653 * 35.27530 * 13 12 11 15 15 O 1.21289 * 119.99923 * 355.97447 * 14 13 12 16 16 C 1.50701 * 119.99813 * 175.70176 * 14 13 12 17 17 C 1.53001 * 109.46778 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46778 * 180.02562 * 17 16 14 19 19 C 1.38245 * 119.98831 * 269.72539 * 18 17 16 20 20 C 1.38211 * 120.01070 * 179.72608 * 19 18 17 21 21 C 1.38354 * 119.99046 * 0.55148 * 20 19 18 22 22 Cl 1.73596 * 120.01463 * 179.70404 * 21 20 19 23 23 C 1.38353 * 119.96946 * 359.72500 * 21 20 19 24 24 C 1.38208 * 119.98959 * 359.97438 * 23 21 20 25 25 C 1.39478 * 120.33177 * 0.25871 * 12 11 10 26 26 C 1.36371 * 120.16900 * 359.48151 * 25 12 11 27 27 H 0.97000 * 120.00407 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.08717 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.91537 * 179.97438 * 11 10 9 30 30 H 0.96994 * 120.00089 * 215.26636 * 13 12 11 31 31 H 1.09000 * 109.47178 * 299.99698 * 16 14 13 32 32 H 1.08998 * 109.47156 * 59.99861 * 16 14 13 33 33 H 1.09000 * 109.47267 * 299.99947 * 17 16 14 34 34 H 1.08998 * 109.47144 * 60.00156 * 17 16 14 35 35 H 1.07996 * 119.98845 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.00551 * 180.27342 * 20 19 18 37 37 H 1.07996 * 120.00371 * 179.97438 * 23 21 20 38 38 H 1.08000 * 119.99417 * 179.97438 * 24 23 21 39 39 H 1.08002 * 119.91712 * 179.73820 * 25 12 11 40 40 H 1.08005 * 120.08599 * 180.25484 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8838 2.3965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0720 9 6 1.3057 -2.4322 0.0958 10 6 1.8650 -3.5178 0.7978 11 6 1.1805 -4.6941 0.8851 12 6 -0.0705 -4.8236 0.2820 13 7 -0.7631 -6.0280 0.3751 14 6 -0.6802 -6.7679 1.4986 15 8 0.0543 -6.4220 2.3997 16 6 -1.5048 -8.0215 1.6377 17 6 -1.2253 -8.6677 2.9961 18 6 -2.0494 -9.9217 3.1350 19 6 -3.3139 -9.8596 3.6902 20 6 -4.0724 -11.0085 3.8126 21 6 -3.5615 -12.2227 3.3897 22 17 -4.5106 -13.6674 3.5502 23 6 -2.2937 -12.2851 2.8394 24 6 -1.5386 -11.1346 2.7118 25 6 -0.6286 -3.7546 -0.4188 26 6 0.0415 -2.5705 -0.5102 27 1 -0.4851 0.8400 -0.0004 28 1 2.8337 -3.4192 1.2649 29 1 1.6082 -5.5276 1.4226 30 1 -1.3052 -6.3344 -0.3685 31 1 -2.5630 -7.7703 1.5653 32 1 -1.2419 -8.7194 0.8428 33 1 -0.1671 -8.9190 3.0681 34 1 -1.4879 -7.9699 3.7913 35 1 -3.7110 -8.9123 4.0240 36 1 -5.0620 -10.9591 4.2423 37 1 -1.8942 -13.2327 2.5095 38 1 -0.5487 -11.1833 2.2826 39 1 -1.5959 -3.8636 -0.8867 40 1 -0.3937 -1.7422 -1.0497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027133303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:16 Heat of formation + Delta-G solvation = -10.926896 kcal Electronic energy + Delta-G solvation = -23235.513794 eV Core-core repulsion = 19618.937083 eV Total energy + Delta-G solvation = -3616.576711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.02586 -39.44411 -37.35385 -36.83986 -34.53805 -33.92999 -32.91400 -31.40454 -30.06766 -29.56828 -28.66426 -25.59349 -24.15169 -23.17922 -21.79069 -21.21711 -20.61250 -19.56374 -17.51038 -17.33801 -16.87656 -16.30813 -16.12971 -15.38958 -15.19391 -15.06264 -14.20710 -13.96132 -13.86583 -13.85440 -13.48118 -13.39931 -12.78383 -12.67157 -12.48603 -12.14132 -11.93237 -11.74668 -11.56777 -11.47759 -11.34908 -11.22271 -11.16211 -11.04988 -10.93933 -10.74154 -10.02107 -9.50153 -9.45043 -9.38568 -9.16942 -8.91491 -8.81013 -7.56156 -6.87580 -6.62920 -4.35420 0.79074 0.95062 1.80006 2.53579 3.00367 3.07411 3.09515 3.14745 3.24278 3.33726 3.72635 3.97425 4.42445 4.52896 4.57103 4.68870 4.89300 4.90854 5.00775 5.13975 5.19820 5.37517 5.51668 5.55763 5.65257 5.74787 5.88560 5.90931 6.02031 6.17832 6.29514 6.43201 6.47581 6.74626 6.90709 7.05979 7.19898 7.28643 7.62701 7.73550 7.85814 8.05477 8.25291 8.30503 8.61461 8.74088 8.91877 8.99090 10.28199 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.044841 B = 0.001695 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.277176 B =16516.289984 C =16672.936883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.086 4.086 12 C 0.003 3.997 13 N -0.653 5.653 14 C 0.497 3.503 15 O -0.532 6.532 16 C -0.132 4.132 17 C -0.067 4.067 18 C -0.072 4.072 19 C -0.104 4.104 20 C -0.109 4.109 21 C -0.042 4.042 22 Cl -0.077 7.077 23 C -0.109 4.109 24 C -0.104 4.104 25 C -0.122 4.122 26 C -0.141 4.141 27 H 0.277 0.723 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.396 0.604 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 -20.475 3.176 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.225 4.225 11 C -0.106 4.106 12 C -0.089 4.089 13 N -0.295 5.295 14 C 0.283 3.717 15 O -0.409 6.409 16 C -0.173 4.173 17 C -0.105 4.105 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.068 4.068 22 Cl -0.048 7.048 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.142 4.142 26 C -0.161 4.161 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.229 0.771 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.109 0.891 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.329 -20.196 3.849 22.183 hybrid contribution -0.223 0.479 -0.286 0.600 sum -8.552 -19.718 3.563 21.786 Atomic orbital electron populations 1.69763 1.07294 1.28603 1.38296 1.25880 0.94941 1.01184 0.92562 0.86150 0.80608 0.80846 0.78389 1.18574 1.20003 1.19987 1.19539 0.94772 0.90210 1.44633 0.90555 1.17738 0.92315 0.92045 0.88289 1.20810 1.01216 0.94992 1.05513 1.20394 0.92788 0.97866 0.99546 1.17285 0.94220 0.85937 1.11486 1.43039 1.48762 1.21342 1.16403 1.20571 0.83481 0.85395 0.82208 1.90695 1.39348 1.70963 1.39925 1.21620 1.01068 0.95563 0.99012 1.20373 0.99926 0.93113 0.97093 1.20118 0.94741 0.95382 0.96937 1.21108 0.93796 0.98238 0.99049 1.21064 1.00611 0.90876 1.00171 1.20939 0.93666 0.87964 1.04249 1.98370 1.72226 1.37617 1.96599 1.21055 0.92681 0.99532 0.99485 1.21092 1.00172 0.91353 0.99613 1.20322 0.98368 0.93204 1.02292 1.21195 0.97275 0.95561 1.02080 0.91201 0.88605 0.87488 0.77105 0.88987 0.89112 0.89773 0.89708 0.84856 0.84989 0.85006 0.84894 0.89108 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.07 10.59 55.55 0.59 -20.48 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 18.96 29.56 -169.99 -5.03 13.93 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.27 9.02 -37.85 -0.34 -12.61 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 10 C -0.21 -5.18 9.74 -39.26 -0.38 -5.56 16 11 C -0.09 -2.04 8.61 -39.79 -0.34 -2.38 16 12 C 0.00 0.06 6.30 -83.57 -0.53 -0.46 16 13 N -0.65 -10.88 5.30 -9.74 -0.05 -10.94 16 14 C 0.50 7.94 7.66 -10.98 -0.08 7.86 16 15 O -0.53 -10.79 13.41 5.55 0.07 -10.72 16 16 C -0.13 -1.38 5.68 -27.88 -0.16 -1.54 16 17 C -0.07 -0.69 4.63 -27.88 -0.13 -0.82 16 18 C -0.07 -0.64 5.13 -104.62 -0.54 -1.17 16 19 C -0.10 -0.87 9.70 -39.59 -0.38 -1.25 16 20 C -0.11 -0.89 9.83 -39.55 -0.39 -1.28 16 21 C -0.04 -0.36 6.32 -39.50 -0.25 -0.61 16 22 Cl -0.08 -0.63 28.96 -51.86 -1.50 -2.13 16 23 C -0.11 -0.88 9.83 -39.55 -0.39 -1.26 16 24 C -0.10 -0.85 9.70 -39.59 -0.38 -1.23 16 25 C -0.12 -2.74 9.90 -39.79 -0.39 -3.13 16 26 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 29 H 0.11 2.49 6.23 -52.48 -0.33 2.16 16 30 H 0.40 5.07 8.82 -40.82 -0.36 4.71 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.91 8.05 -51.93 -0.42 0.50 16 34 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 3.47 6.13 -52.48 -0.32 3.15 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -30.31 358.84 -11.00 -41.31 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.77 Total: 9.31 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -5.72 Total: -25.69 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.54 Total: -31.42 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.31 -11.00 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027133303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.385 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds