Wall clock time and date at job start Tue Mar 31 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99512 * 3 2 1 5 5 H 1.48499 * 109.47268 * 29.99504 * 3 2 1 6 6 H 1.48502 * 109.47201 * 150.00157 * 3 2 1 7 7 C 1.39908 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00157 * 175.56239 * 7 2 1 9 9 C 1.41160 * 120.00062 * 355.56193 * 7 2 1 10 10 C 1.40860 * 120.16287 * 214.78371 * 9 7 2 11 11 C 1.36374 * 119.82882 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16535 * 359.97438 * 11 10 9 13 13 N 1.39239 * 119.83243 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99902 * 35.28724 * 13 12 11 15 15 O 1.21287 * 120.00052 * 355.71185 * 14 13 12 16 16 C 1.50704 * 119.99982 * 175.70567 * 14 13 12 17 17 C 1.52994 * 109.47289 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47538 * 180.02562 * 17 16 14 19 19 C 1.38230 * 120.00351 * 100.00017 * 18 17 16 20 20 C 1.38229 * 120.01028 * 179.97438 * 19 18 17 21 21 C 1.38254 * 120.02532 * 0.04921 * 20 19 18 22 22 C 1.38195 * 120.01658 * 359.97432 * 21 20 19 23 23 C 1.38332 * 120.00539 * 279.73491 * 18 17 16 24 24 Cl 1.73598 * 120.01355 * 359.96589 * 23 18 17 25 25 C 1.39479 * 120.33448 * 0.25882 * 12 11 10 26 26 C 1.36370 * 120.16701 * 359.48150 * 25 12 11 27 27 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.09055 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.91969 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00302 * 215.28820 * 13 12 11 31 31 H 1.09001 * 109.46685 * 60.00134 * 16 14 13 32 32 H 1.08993 * 109.47200 * 300.00528 * 16 14 13 33 33 H 1.09001 * 109.47143 * 60.00420 * 17 16 14 34 34 H 1.09003 * 109.47515 * 300.00553 * 17 16 14 35 35 H 1.07995 * 119.99849 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.98661 * 180.02562 * 20 19 18 37 37 H 1.08006 * 119.99836 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00898 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.91380 * 179.74806 * 25 12 11 40 40 H 1.07999 * 120.08697 * 180.25477 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0857 -1.2131 -0.0718 9 6 1.3056 -2.4323 0.0957 10 6 1.8648 -3.5180 0.7976 11 6 1.1803 -4.6942 0.8848 12 6 -0.0707 -4.8236 0.2816 13 7 -0.7633 -6.0279 0.3745 14 6 -0.6808 -6.7678 1.4980 15 8 0.0571 -6.4245 2.3974 16 6 -1.5054 -8.0216 1.6369 17 6 -1.2263 -8.6677 2.9953 18 6 -2.0504 -9.9218 3.1340 19 6 -1.4727 -11.1570 2.9080 20 6 -2.2283 -12.3075 3.0357 21 6 -3.5624 -12.2232 3.3884 22 6 -4.1413 -10.9888 3.6141 23 6 -3.3837 -9.8372 3.4928 24 17 -4.1079 -8.2867 3.7843 25 6 -0.6287 -3.7545 -0.4193 26 6 0.0415 -2.5704 -0.5105 27 1 -0.4850 0.8400 -0.0004 28 1 2.8336 -3.4194 1.2648 29 1 1.6079 -5.5278 1.4223 30 1 -1.3052 -6.3345 -0.3693 31 1 -1.2421 -8.7194 0.8421 32 1 -2.5635 -7.7704 1.5641 33 1 -1.4893 -7.9700 3.7904 34 1 -0.1681 -8.9189 3.0678 35 1 -0.4306 -11.2235 2.6325 36 1 -1.7764 -13.2724 2.8594 37 1 -4.1526 -13.1224 3.4876 38 1 -5.1833 -10.9232 3.8901 39 1 -1.5960 -3.8635 -0.8871 40 1 -0.3936 -1.7422 -1.0500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028437341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:21 Heat of formation + Delta-G solvation = -8.413429 kcal Electronic energy + Delta-G solvation = -23659.937125 eV Core-core repulsion = 20043.469407 eV Total energy + Delta-G solvation = -3616.467719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.092 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.00743 -39.40470 -37.28781 -36.63009 -34.55370 -34.06320 -32.88419 -31.06052 -30.15042 -29.54200 -28.66375 -25.60636 -24.15758 -23.01186 -21.79527 -21.21622 -20.58598 -19.51973 -17.44917 -17.27697 -16.81641 -16.24701 -16.18445 -15.45750 -15.16659 -14.98230 -14.26406 -14.11584 -13.91523 -13.63062 -13.38913 -13.15828 -12.74293 -12.61095 -12.19389 -12.10516 -11.83144 -11.78267 -11.68876 -11.64244 -11.33165 -11.13966 -11.04544 -10.90939 -10.87034 -10.70420 -10.00450 -9.47892 -9.40715 -9.25021 -9.08928 -8.92211 -8.81790 -7.52745 -6.84028 -6.59917 -4.32387 0.83735 0.93733 1.93999 2.58119 3.04235 3.09924 3.11466 3.15385 3.27596 3.37715 3.76613 3.99551 4.45306 4.47017 4.64879 4.71808 4.90717 4.95928 5.00900 5.15871 5.22235 5.38883 5.55913 5.60474 5.68147 5.72805 5.91004 6.07361 6.09253 6.21141 6.21452 6.46712 6.48480 6.78484 6.94587 7.08993 7.23323 7.31930 7.65872 7.77292 7.89651 8.08345 8.29303 8.33844 8.64541 8.78722 8.94681 9.02498 10.31135 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.002141 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.748103 B =13073.382288 C =13512.779169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.099 3.901 10 C -0.206 4.206 11 C -0.086 4.086 12 C 0.005 3.995 13 N -0.653 5.653 14 C 0.499 3.501 15 O -0.531 6.531 16 C -0.133 4.133 17 C -0.069 4.069 18 C -0.069 4.069 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.036 4.036 24 Cl -0.062 7.062 25 C -0.122 4.122 26 C -0.141 4.141 27 H 0.277 0.723 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.395 0.605 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 -21.305 3.174 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.106 4.106 12 C -0.087 4.087 13 N -0.296 5.296 14 C 0.286 3.714 15 O -0.408 6.408 16 C -0.173 4.173 17 C -0.107 4.107 18 C -0.069 4.069 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.062 4.062 24 Cl -0.033 7.033 25 C -0.142 4.142 26 C -0.161 4.161 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.229 0.771 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.109 0.891 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.453 -20.748 3.864 22.735 hybrid contribution -0.218 0.745 -0.266 0.820 sum -8.670 -20.004 3.599 22.097 Atomic orbital electron populations 1.69760 1.07276 1.28662 1.38273 1.25880 0.94948 1.01160 0.92609 0.86198 0.80245 0.80522 0.79009 1.19552 1.20323 1.18735 1.19489 0.94703 0.90211 1.44768 0.90641 1.17728 0.92315 0.92023 0.88311 1.20810 1.01218 0.95002 1.05526 1.20397 0.92787 0.97870 0.99537 1.17288 0.94174 0.85925 1.11360 1.43031 1.48834 1.21374 1.16369 1.20518 0.83391 0.85312 0.82163 1.90687 1.39164 1.70996 1.39989 1.21598 1.01305 0.95613 0.98782 1.20391 0.99723 0.93058 0.97520 1.19890 0.92384 0.96233 0.98436 1.21114 1.00445 0.91092 0.99645 1.21258 0.94218 0.98686 0.99088 1.21103 0.95350 0.97058 0.99884 1.21068 1.00176 0.91049 1.00557 1.20923 0.93556 0.87226 1.04512 1.98397 1.82877 1.27712 1.94355 1.20323 0.98354 0.93204 1.02321 1.21195 0.97290 0.95552 1.02105 0.91175 0.88620 0.87473 0.77132 0.89170 0.88958 0.89281 0.89657 0.84936 0.85437 0.85274 0.85035 0.89122 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.38 10.59 55.55 0.59 -20.79 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.92 19.22 29.56 -169.99 -5.03 14.19 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.42 9.03 -37.85 -0.34 -12.77 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 11 C -0.09 -2.08 8.61 -39.79 -0.34 -2.42 16 12 C 0.00 0.11 6.31 -83.57 -0.53 -0.42 16 13 N -0.65 -11.44 5.30 -9.73 -0.05 -11.49 16 14 C 0.50 8.52 7.66 -10.98 -0.08 8.43 16 15 O -0.53 -11.25 13.40 5.55 0.07 -11.17 16 16 C -0.13 -1.59 5.64 -27.88 -0.16 -1.74 16 17 C -0.07 -0.82 4.09 -27.89 -0.11 -0.93 16 18 C -0.07 -0.69 5.14 -104.59 -0.54 -1.23 16 19 C -0.10 -0.88 9.67 -39.59 -0.38 -1.26 16 20 C -0.11 -0.81 10.05 -39.58 -0.40 -1.20 16 21 C -0.12 -0.81 10.04 -39.59 -0.40 -1.20 16 22 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 23 C -0.04 -0.36 6.31 -39.50 -0.25 -0.61 16 24 Cl -0.06 -0.69 26.66 -51.86 -1.38 -2.08 16 25 C -0.12 -2.81 9.90 -39.79 -0.39 -3.20 16 26 C -0.14 -3.68 8.62 -39.26 -0.34 -4.01 16 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 29 H 0.11 2.54 6.22 -52.48 -0.33 2.22 16 30 H 0.40 5.40 8.82 -40.82 -0.36 5.04 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.04 7.30 -51.93 -0.38 0.66 16 33 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 34 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 35 H 0.13 0.92 8.04 -52.49 -0.42 0.50 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -30.98 354.77 -10.86 -41.84 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.68 Total: 9.93 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -5.72 Total: -25.78 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.54 Total: -32.28 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.38 Total: -2.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.98 -10.86 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028437341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.425 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds