Wall clock time and date at job start Tue Mar 31 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99512 * 3 2 1 5 5 H 1.48499 * 109.47268 * 29.99504 * 3 2 1 6 6 H 1.48502 * 109.47201 * 150.00157 * 3 2 1 7 7 C 1.39908 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00157 * 175.56239 * 7 2 1 9 9 C 1.41160 * 120.00062 * 355.56193 * 7 2 1 10 10 C 1.40860 * 120.16287 * 214.78371 * 9 7 2 11 11 C 1.36374 * 119.82882 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16535 * 359.97438 * 11 10 9 13 13 N 1.39239 * 119.83243 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99902 * 35.28724 * 13 12 11 15 15 O 1.21287 * 120.00052 * 355.71185 * 14 13 12 16 16 C 1.50704 * 119.99982 * 175.70567 * 14 13 12 17 17 C 1.52994 * 109.47289 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47538 * 180.02562 * 17 16 14 19 19 C 1.38230 * 120.00351 * 100.00017 * 18 17 16 20 20 C 1.38229 * 120.01028 * 179.97438 * 19 18 17 21 21 C 1.38254 * 120.02532 * 0.04921 * 20 19 18 22 22 C 1.38195 * 120.01658 * 359.97432 * 21 20 19 23 23 C 1.38332 * 120.00539 * 279.73491 * 18 17 16 24 24 Cl 1.73598 * 120.01355 * 359.96589 * 23 18 17 25 25 C 1.39479 * 120.33448 * 0.25882 * 12 11 10 26 26 C 1.36370 * 120.16701 * 359.48150 * 25 12 11 27 27 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.09055 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.91969 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00302 * 215.28820 * 13 12 11 31 31 H 1.09001 * 109.46685 * 60.00134 * 16 14 13 32 32 H 1.08993 * 109.47200 * 300.00528 * 16 14 13 33 33 H 1.09001 * 109.47143 * 60.00420 * 17 16 14 34 34 H 1.09003 * 109.47515 * 300.00553 * 17 16 14 35 35 H 1.07995 * 119.99849 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.98661 * 180.02562 * 20 19 18 37 37 H 1.08006 * 119.99836 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00898 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.91380 * 179.74806 * 25 12 11 40 40 H 1.07999 * 120.08697 * 180.25477 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0857 -1.2131 -0.0718 9 6 1.3056 -2.4323 0.0957 10 6 1.8648 -3.5180 0.7976 11 6 1.1803 -4.6942 0.8848 12 6 -0.0707 -4.8236 0.2816 13 7 -0.7633 -6.0279 0.3745 14 6 -0.6808 -6.7678 1.4980 15 8 0.0571 -6.4245 2.3974 16 6 -1.5054 -8.0216 1.6369 17 6 -1.2263 -8.6677 2.9953 18 6 -2.0504 -9.9218 3.1340 19 6 -1.4727 -11.1570 2.9080 20 6 -2.2283 -12.3075 3.0357 21 6 -3.5624 -12.2232 3.3884 22 6 -4.1413 -10.9888 3.6141 23 6 -3.3837 -9.8372 3.4928 24 17 -4.1079 -8.2867 3.7843 25 6 -0.6287 -3.7545 -0.4193 26 6 0.0415 -2.5704 -0.5105 27 1 -0.4850 0.8400 -0.0004 28 1 2.8336 -3.4194 1.2648 29 1 1.6079 -5.5278 1.4223 30 1 -1.3052 -6.3345 -0.3693 31 1 -1.2421 -8.7194 0.8421 32 1 -2.5635 -7.7704 1.5641 33 1 -1.4893 -7.9700 3.7904 34 1 -0.1681 -8.9189 3.0678 35 1 -0.4306 -11.2235 2.6325 36 1 -1.7764 -13.2724 2.8594 37 1 -4.1526 -13.1224 3.4876 38 1 -5.1833 -10.9232 3.8901 39 1 -1.5960 -3.8635 -0.8871 40 1 -0.3936 -1.7422 -1.0500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028437341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:19 Heat of formation + Delta-G solvation = -23.947943 kcal Electronic energy + Delta-G solvation = -23660.610752 eV Core-core repulsion = 20043.469407 eV Total energy + Delta-G solvation = -3617.141346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.092 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29389 -40.32871 -39.07331 -37.38387 -36.20647 -35.07007 -34.67403 -31.68873 -31.52068 -31.25375 -30.22433 -27.13611 -25.47565 -23.62164 -23.38672 -22.66475 -21.93443 -21.02492 -19.28294 -18.38791 -18.10909 -17.59477 -17.06738 -16.99942 -16.18088 -16.15835 -15.71511 -15.39279 -15.01947 -14.73629 -14.56142 -14.42036 -14.15666 -13.93593 -13.89486 -13.56801 -13.24596 -13.10743 -12.85195 -12.78364 -12.53261 -12.48757 -12.45368 -12.32867 -11.88761 -11.79572 -11.62288 -11.40069 -11.20381 -10.78883 -10.57304 -9.83421 -9.60323 -9.47323 -8.73099 -8.50854 -6.33590 0.20501 0.32847 0.79318 1.13084 1.21549 1.38726 1.44405 1.53014 1.80882 2.23297 2.35440 2.71721 2.80381 3.60187 3.68123 3.81133 3.92636 4.06479 4.21052 4.26802 4.39325 4.45182 4.47503 4.51301 4.62886 4.74984 4.86827 4.93634 5.01910 5.12359 5.14482 5.18493 5.33131 5.34914 5.44016 5.48460 5.52860 5.69190 5.90814 5.91176 6.02431 6.13714 6.38647 6.66751 6.74054 6.96147 6.99710 7.41058 8.41800 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.002141 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.748103 B =13073.382288 C =13512.779169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.065 3.935 10 C -0.221 4.221 11 C -0.097 4.097 12 C 0.022 3.978 13 N -0.647 5.647 14 C 0.499 3.501 15 O -0.574 6.574 16 C -0.117 4.117 17 C -0.064 4.064 18 C -0.083 4.083 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.051 4.051 24 Cl -0.082 7.082 25 C -0.121 4.121 26 C -0.160 4.160 27 H 0.284 0.716 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 -23.670 2.732 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.063 3.937 10 C -0.241 4.241 11 C -0.117 4.117 12 C -0.072 4.072 13 N -0.292 5.292 14 C 0.288 3.712 15 O -0.454 6.454 16 C -0.157 4.157 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.077 4.077 24 Cl -0.054 7.054 25 C -0.141 4.141 26 C -0.180 4.180 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.255 0.745 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.142 0.858 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.587 -23.160 3.399 25.296 hybrid contribution 0.054 1.233 -0.084 1.237 sum -9.533 -21.928 3.315 24.139 Atomic orbital electron populations 1.69826 1.08589 1.29932 1.38661 1.26758 0.95837 1.04365 0.91615 0.85095 0.78651 0.75764 0.79497 1.18330 1.19441 1.18680 1.19714 0.94818 0.91312 1.46968 0.90932 1.18047 0.93404 0.92746 0.89493 1.20941 1.01632 0.95579 1.05969 1.20525 0.93723 0.97458 1.00031 1.17353 0.93448 0.87470 1.08919 1.42997 1.48620 1.19858 1.17745 1.21441 0.82727 0.86077 0.80960 1.90675 1.41097 1.72199 1.41395 1.21576 1.00642 0.93326 1.00128 1.20258 0.99833 0.93584 0.96534 1.19754 0.92281 0.96024 1.00323 1.21331 1.01262 0.90810 0.99339 1.21618 0.94194 0.99373 0.97715 1.21491 0.95644 0.97455 0.98245 1.21311 1.00806 0.90996 1.00403 1.21077 0.93861 0.86968 1.05824 1.98387 1.83163 1.29225 1.94586 1.20576 0.99314 0.92240 1.01971 1.21184 0.97506 0.96464 1.02812 0.90505 0.88619 0.87274 0.74501 0.85829 0.87792 0.91769 0.90112 0.83700 0.82687 0.82439 0.83865 0.85838 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.29 10.59 21.82 0.23 -45.06 16 2 C 0.03 1.35 5.42 85.24 0.46 1.82 16 3 Si 0.99 39.86 29.56 68.60 2.03 41.88 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.50 -27.85 9.03 23.39 0.21 -27.64 16 8 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 9 C 0.07 3.69 5.55 -21.28 -0.12 3.57 16 10 C -0.22 -11.78 9.74 22.48 0.22 -11.56 16 11 C -0.10 -4.78 8.61 22.14 0.19 -4.59 16 12 C 0.02 0.96 6.31 38.57 0.24 1.20 16 13 N -0.65 -21.56 5.30 -303.09 -1.61 -23.16 16 14 C 0.50 16.43 7.66 87.66 0.67 17.11 16 15 O -0.57 -24.40 13.40 -3.05 -0.04 -24.44 16 16 C -0.12 -2.57 5.64 29.85 0.17 -2.40 16 17 C -0.06 -1.47 4.09 29.85 0.12 -1.34 16 18 C -0.08 -1.54 5.14 -19.84 -0.10 -1.65 16 19 C -0.11 -1.54 9.67 22.27 0.22 -1.32 16 20 C -0.11 -1.16 10.05 22.27 0.22 -0.93 16 21 C -0.11 -1.14 10.04 22.26 0.22 -0.92 16 22 C -0.12 -1.66 9.83 22.29 0.22 -1.44 16 23 C -0.05 -0.96 6.31 22.32 0.14 -0.81 16 24 Cl -0.08 -1.80 26.66 -2.72 -0.07 -1.87 16 25 C -0.12 -5.53 9.90 22.13 0.22 -5.31 16 26 C -0.16 -8.50 8.62 22.48 0.19 -8.31 16 27 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 28 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 29 H 0.11 5.28 6.22 -2.91 -0.02 5.26 16 30 H 0.42 10.22 8.82 -92.71 -0.82 9.40 16 31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.10 2.11 7.30 -2.39 -0.02 2.09 16 33 H 0.06 1.78 7.30 -2.39 -0.02 1.76 16 34 H 0.08 1.87 7.96 -2.39 -0.02 1.85 16 35 H 0.15 1.61 8.04 -2.91 -0.02 1.58 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.12 6.56 6.13 -2.91 -0.02 6.54 16 Total: -1.00 -70.05 354.77 4.30 -65.74 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.26 Total: 31.45 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 3.50 Total: -44.54 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -1.38 Total: -68.23 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.04 Total: -24.44 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.87 kcal Total: -70.05 4.30 -65.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028437341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.795 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds