Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86791 * 119.99885 * 2 1 4 4 H 1.48507 * 109.47427 * 239.99940 * 3 2 1 5 5 H 1.48507 * 109.47632 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47297 * 120.00005 * 3 2 1 7 7 C 1.38949 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 159.39505 * 7 2 1 9 9 N 1.37095 * 120.00437 * 339.39646 * 7 2 1 10 10 C 1.46498 * 120.00054 * 322.68659 * 9 7 2 11 11 C 1.50698 * 109.47372 * 269.99923 * 10 9 7 12 12 C 1.38229 * 119.99941 * 269.72915 * 11 10 9 13 13 C 1.38239 * 120.00166 * 179.76161 * 12 11 10 14 14 C 1.38238 * 119.99820 * 0.50767 * 13 12 11 15 15 C 1.38236 * 119.99723 * 359.74161 * 14 13 12 16 16 C 1.38234 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.34770 * 120.00254 * 142.68169 * 9 7 2 18 18 O 1.21300 * 120.00204 * 186.03867 * 17 9 7 19 19 C 1.50701 * 119.99886 * 5.76478 * 17 9 7 20 20 O 1.42904 * 109.47280 * 176.07850 * 19 17 9 21 21 C 1.35955 * 117.00119 * 174.73615 * 20 19 17 22 22 C 1.38655 * 120.06332 * 5.44156 * 21 20 19 23 23 C 1.38182 * 119.97134 * 179.97438 * 22 21 20 24 24 C 1.38265 * 120.09249 * 0.02886 * 23 22 21 25 25 C 1.38252 * 120.12589 * 359.97438 * 24 23 22 26 26 C 1.38331 * 120.03018 * 359.70628 * 25 24 23 27 27 F 1.35105 * 120.04998 * 180.27319 * 26 25 24 28 28 H 0.96994 * 119.99703 * 5.05252 * 1 2 3 29 29 H 1.09010 * 109.47138 * 29.99754 * 10 9 7 30 30 H 1.09000 * 109.47454 * 149.99386 * 10 9 7 31 31 H 1.08000 * 120.00016 * 359.97438 * 12 11 10 32 32 H 1.07997 * 120.00372 * 180.22380 * 13 12 11 33 33 H 1.07996 * 120.00093 * 179.72117 * 14 13 12 34 34 H 1.08002 * 119.99665 * 179.97438 * 15 14 13 35 35 H 1.07998 * 120.00013 * 179.97438 * 16 15 14 36 36 H 1.09003 * 109.47274 * 296.07653 * 19 17 9 37 37 H 1.09004 * 109.47090 * 56.08260 * 19 17 9 38 38 H 1.08007 * 120.01648 * 359.95606 * 22 21 20 39 39 H 1.07993 * 119.95344 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.93233 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.98508 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0371 -1.2334 -0.3286 9 7 1.3893 -2.3525 0.4188 10 6 0.4466 -2.3102 1.5395 11 6 1.1898 -2.5408 2.8300 12 6 1.3456 -3.8247 3.3178 13 6 2.0316 -4.0368 4.4992 14 6 2.5525 -2.9639 5.1981 15 6 2.3922 -1.6795 4.7128 16 6 1.7104 -1.4679 3.5291 17 6 1.6472 -3.5211 -0.2009 18 8 1.0196 -4.5161 0.0951 19 6 2.7110 -3.5904 -1.2661 20 8 2.8594 -4.9426 -1.7038 21 6 3.7052 -5.1651 -2.7448 22 6 4.4629 -4.1239 -3.2589 23 6 5.3223 -4.3523 -4.3165 24 6 5.4275 -5.6178 -4.8635 25 6 4.6739 -6.6588 -4.3540 26 6 3.8168 -6.4374 -3.2910 27 9 3.0842 -7.4557 -2.7892 28 1 -0.4849 0.8368 -0.0740 29 1 -0.0390 -1.3346 1.5692 30 1 -0.3068 -3.0872 1.4101 31 1 0.9345 -4.6626 2.7743 32 1 2.1565 -5.0403 4.8784 33 1 3.0845 -3.1292 6.1233 34 1 2.7989 -0.8413 5.2591 35 1 1.5848 -0.4643 3.1503 36 1 2.4210 -2.9650 -2.1104 37 1 3.6572 -3.2347 -0.8583 38 1 4.3811 -3.1347 -2.8331 39 1 5.9120 -3.5410 -4.7170 40 1 6.0997 -5.7932 -5.6903 41 1 4.7582 -7.6464 -4.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044979007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -69.346413 kcal Electronic energy + Delta-G solvation = -27364.896318 eV Core-core repulsion = 23317.449972 eV Total energy + Delta-G solvation = -4047.446346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.83038 -41.33895 -40.56100 -39.56191 -38.25953 -36.77370 -33.77392 -32.71218 -31.73373 -31.66299 -31.17478 -29.29451 -27.49449 -26.15423 -23.80269 -23.39370 -23.37060 -22.22473 -21.13302 -19.57957 -19.14564 -18.05628 -17.89020 -17.47202 -17.38717 -17.26805 -16.69557 -16.36990 -16.22191 -15.97099 -15.77121 -15.72524 -15.34730 -15.15126 -14.80891 -14.25357 -14.09678 -13.91703 -13.72626 -13.50807 -13.23944 -13.19360 -13.08765 -12.72822 -12.61926 -12.55872 -12.17313 -12.13072 -12.05095 -11.94242 -11.77948 -11.14542 -10.52483 -9.93768 -9.78657 -9.62554 -9.55564 -9.23095 -8.35417 -6.13595 0.13543 0.27124 0.45358 0.53642 1.40665 1.49986 1.57940 1.78637 1.84501 2.32424 2.62203 2.82662 3.00412 3.17297 3.30581 3.79233 3.85318 4.00339 4.05731 4.07499 4.16966 4.22340 4.27167 4.31717 4.33669 4.35734 4.50957 4.56790 4.69962 4.83175 5.01916 5.10374 5.11185 5.18784 5.23996 5.27524 5.42159 5.43309 5.61381 5.61966 5.72320 5.82493 5.93496 6.17362 6.23680 6.35439 7.03994 7.42307 7.87669 8.68031 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.004000 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.639384 B = 6997.858086 C = 8581.953200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.015 3.985 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.366 4.366 8 H 0.103 0.897 9 N -0.430 5.430 10 C 0.151 3.849 11 C -0.102 4.102 12 C -0.127 4.127 13 C -0.128 4.128 14 C -0.120 4.120 15 C -0.124 4.124 16 C -0.110 4.110 17 C 0.456 3.544 18 O -0.621 6.621 19 C 0.077 3.923 20 O -0.323 6.323 21 C 0.068 3.932 22 C -0.191 4.191 23 C -0.080 4.080 24 C -0.121 4.121 25 C -0.112 4.112 26 C 0.027 3.973 27 F -0.155 7.155 28 H 0.276 0.724 29 H 0.104 0.896 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.725 -1.716 -2.744 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.120 0.880 9 N -0.148 5.148 10 C 0.029 3.971 11 C -0.103 4.103 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.138 4.138 15 C -0.141 4.141 16 C -0.128 4.128 17 C 0.245 3.755 18 O -0.508 6.508 19 C -0.001 4.001 20 O -0.236 6.236 21 C 0.022 3.978 22 C -0.210 4.210 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.130 4.130 26 C 0.008 3.992 27 F -0.134 7.134 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.193 0.807 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.074 -2.212 -2.408 12.509 hybrid contribution -0.650 0.613 0.041 0.895 sum 11.424 -1.599 -2.367 11.776 Atomic orbital electron populations 1.69945 1.07986 1.29360 1.45219 1.26182 0.95620 1.02751 0.94400 0.85192 0.78161 0.76452 0.79949 1.18261 1.20985 1.18759 1.19760 0.97232 0.84972 1.47332 0.87957 1.43439 1.39317 1.06133 1.25924 1.20287 0.90857 1.03050 0.82943 1.20384 0.99693 0.94052 0.96142 1.21191 1.00179 0.96025 0.97187 1.21376 0.98104 1.00477 0.94630 1.21460 0.99710 0.91933 1.00691 1.21445 0.98727 0.98409 0.95564 1.21123 0.98042 0.98108 0.95557 1.20540 0.86454 0.84529 0.83975 1.90532 1.54150 1.37540 1.68544 1.22247 0.99162 0.81017 0.97664 1.86145 1.61144 1.29459 1.46856 1.19622 0.93393 0.94739 0.90094 1.21524 0.99784 0.98487 1.01185 1.21499 0.96050 0.98781 0.93420 1.21422 0.99850 0.91268 1.01382 1.21370 0.94989 1.02952 0.93690 1.17640 0.99555 0.82471 0.99575 1.91439 1.76424 1.58260 1.87278 0.91383 0.87843 0.94315 0.88407 0.84215 0.82630 0.83327 0.86968 0.88444 0.88308 0.83654 0.81425 0.80673 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.22 11.39 21.66 0.25 -44.97 16 2 C 0.01 0.70 4.98 84.92 0.42 1.12 16 3 Si 0.98 36.28 29.60 68.60 2.03 38.31 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.37 -17.51 8.69 84.04 0.73 -16.78 16 8 H 0.10 4.48 6.98 -2.91 -0.02 4.46 16 9 N -0.43 -21.83 2.51 -639.59 -1.60 -23.44 16 10 C 0.15 7.60 5.18 85.63 0.44 8.04 16 11 C -0.10 -4.45 5.46 -19.87 -0.11 -4.56 16 12 C -0.13 -5.25 9.70 22.27 0.22 -5.04 16 13 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 14 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 15 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 16 C -0.11 -4.21 9.70 22.27 0.22 -3.99 16 17 C 0.46 23.68 7.69 87.66 0.67 24.36 16 18 O -0.62 -36.38 15.91 15.91 0.25 -36.13 16 19 C 0.08 3.25 3.89 71.24 0.28 3.53 16 20 O -0.32 -14.39 9.54 -74.04 -0.71 -15.09 16 21 C 0.07 2.40 6.68 22.53 0.15 2.55 16 22 C -0.19 -5.17 9.03 22.36 0.20 -4.97 16 23 C -0.08 -1.49 10.04 22.26 0.22 -1.27 16 24 C -0.12 -2.01 10.04 22.28 0.22 -1.79 16 25 C -0.11 -2.47 10.02 22.30 0.22 -2.24 16 26 C 0.03 0.89 7.31 22.45 0.16 1.06 16 27 F -0.16 -5.94 17.11 44.97 0.77 -5.17 16 28 H 0.28 13.24 8.32 -92.71 -0.77 12.47 16 29 H 0.10 5.39 5.41 -2.38 -0.01 5.38 16 30 H 0.04 2.08 7.29 -2.39 -0.02 2.07 16 31 H 0.10 4.46 7.91 -2.91 -0.02 4.44 16 32 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.10 3.88 7.58 -2.39 -0.02 3.86 16 37 H 0.10 3.71 7.23 -2.39 -0.02 3.69 16 38 H 0.15 3.69 6.33 -2.91 -0.02 3.67 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -70.30 359.39 6.78 -63.52 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 1.06 Total: 33.56 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.73 Total: -10.59 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -1.36 Total: -68.41 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.45 Total: -51.22 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.77 Total: -5.17 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -70.30 6.78 -63.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044979007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.822 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds