Wall clock time and date at job start Tue Mar 31 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 38.48661 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47061 * 119.99902 * 11 9 7 14 14 H 1.48503 * 109.47075 * 240.00004 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46902 * 109.47027 * 179.72353 * 17 15 5 19 19 C 1.46467 * 110.99803 * 295.85247 * 18 17 15 20 20 C 1.53176 * 109.90144 * 163.00058 * 19 18 17 21 21 S 1.81820 * 108.67817 * 62.63655 * 20 19 18 22 22 O 1.42103 * 108.70323 * 193.43264 * 21 20 19 23 23 O 1.42099 * 108.82508 * 61.98627 * 21 20 19 24 24 C 1.81819 * 101.01909 * 307.68651 * 21 20 19 25 25 C 1.46466 * 110.99804 * 170.00025 * 18 17 15 26 26 H 1.08997 * 109.47542 * 278.48393 * 3 2 1 27 27 H 1.09004 * 109.47171 * 158.48443 * 3 2 1 28 28 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 29 29 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 30 30 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 31 31 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 32 32 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 34 34 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 35 35 H 1.09003 * 109.40253 * 283.13708 * 19 18 17 36 36 H 1.09008 * 109.40061 * 42.87090 * 19 18 17 37 37 H 1.09005 * 109.60664 * 302.88052 * 20 19 18 38 38 H 1.08995 * 109.60900 * 182.39378 * 20 19 18 39 39 H 1.09004 * 109.60402 * 292.56025 * 24 21 20 40 40 H 1.08996 * 109.60467 * 172.07036 * 24 21 20 41 41 H 1.09006 * 109.40313 * 317.12703 * 25 18 17 42 42 H 1.08999 * 109.40251 * 76.86771 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1282 -0.8977 5 7 4.5835 -1.1280 -0.8972 6 6 5.3161 -0.3381 -1.8900 7 6 5.5678 -1.1793 -3.1147 8 1 5.2168 -2.2001 -3.1502 9 6 6.2463 -0.6459 -4.1900 10 7 6.6742 0.5970 -4.1467 11 14 6.5577 -1.6884 -5.7085 12 1 5.9800 -3.0415 -5.5069 13 1 5.9209 -1.0484 -6.8874 14 1 8.0203 -1.8043 -5.9379 15 6 5.2573 -1.8543 0.0166 16 8 6.4701 -1.8536 0.0171 17 6 4.5037 -2.6717 1.0339 18 7 5.4582 -3.3706 1.9048 19 6 6.2530 -4.3370 1.1434 20 6 7.4956 -4.7367 1.9449 21 16 6.9613 -5.5558 3.4777 22 8 8.0734 -5.6458 4.3577 23 8 6.2426 -6.7345 3.1411 24 6 5.7930 -4.3292 4.1382 25 6 4.7755 -3.9834 3.0466 26 1 2.9714 -0.1508 1.0164 27 1 2.9709 0.9569 -0.3769 28 1 2.7551 -0.9768 -1.9141 29 1 2.7557 -2.0845 -0.5208 30 1 4.7269 0.5367 -2.1650 31 1 6.2684 -0.0169 -1.4679 32 1 7.1511 0.9724 -4.9033 33 1 3.8767 -2.0140 1.6360 34 1 3.8774 -3.4018 0.5214 35 1 5.6508 -5.2232 0.9431 36 1 6.5603 -3.8886 0.1986 37 1 8.0754 -3.8465 2.1890 38 1 8.1050 -5.4229 1.3569 39 1 6.3342 -3.4297 4.4317 40 1 5.2751 -4.7456 5.0021 41 1 4.0396 -3.2853 3.4457 42 1 4.2706 -4.8929 2.7211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049377298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:58 Heat of formation + Delta-G solvation = -57.830511 kcal Electronic energy + Delta-G solvation = -26508.290149 eV Core-core repulsion = 22616.707083 eV Total energy + Delta-G solvation = -3891.583066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -39.88979 -38.01685 -37.07452 -36.83588 -36.17518 -35.30919 -33.01520 -32.04408 -31.46244 -30.93921 -27.99861 -25.96835 -24.31491 -24.10617 -22.80644 -21.48592 -18.96197 -18.70542 -17.72549 -17.27885 -16.69554 -16.56209 -16.44893 -15.98090 -15.90613 -15.62203 -14.98807 -14.85022 -14.65482 -14.43141 -14.03991 -13.80974 -13.33824 -13.11829 -12.88363 -12.61262 -12.52421 -12.45677 -12.35906 -12.27512 -12.19086 -12.10510 -11.95520 -11.90521 -11.61639 -11.35406 -11.06599 -10.96032 -10.83758 -10.70856 -10.31445 -10.19644 -9.77375 -9.20278 -8.57391 -8.55169 -7.95242 -6.16736 -4.21816 -0.13011 2.48081 2.64175 2.73129 3.12331 3.15533 3.22418 3.31351 3.34111 3.47556 3.64922 3.88144 4.10661 4.29308 4.35195 4.45405 4.65932 4.70741 4.83816 4.88950 4.97331 5.01571 5.10096 5.16809 5.19452 5.22451 5.30521 5.41465 5.47014 5.72184 5.74145 5.89214 5.97102 6.47077 6.70955 6.86759 7.26154 7.33075 7.49414 7.78969 8.08142 8.13688 8.73302 8.87712 9.44341 10.91347 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.003832 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.965645 B = 7305.805241 C = 9417.938561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.507 3.493 16 O -0.514 6.514 17 C 0.036 3.964 18 N -0.539 5.539 19 C 0.057 3.943 20 C -0.582 4.582 21 S 2.407 3.593 22 O -0.947 6.947 23 O -0.944 6.944 24 C -0.595 4.595 25 C 0.065 3.935 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -6.380 14.143 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.011 4.011 5 N -0.329 5.329 6 C 0.127 3.873 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.292 3.708 16 O -0.389 6.389 17 C -0.095 4.095 18 N -0.264 5.264 19 C -0.071 4.071 20 C -0.713 4.713 21 S 2.590 3.410 22 O -0.944 6.944 23 O -0.941 6.941 24 C -0.725 4.725 25 C -0.064 4.064 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.117 0.883 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.152 -6.734 14.568 16.856 hybrid contribution -0.125 -0.175 -1.480 1.495 sum -5.277 -6.909 13.089 15.713 Atomic orbital electron populations 1.81224 1.13061 1.08870 1.08986 1.29106 0.95104 0.93063 0.92971 1.19901 0.81334 1.04232 1.03728 1.21331 0.82240 0.96441 1.01051 1.48235 1.04821 1.47701 1.32103 1.19364 0.92636 0.90115 0.85209 1.21425 1.36808 0.98996 0.99660 0.92367 1.24911 0.95259 0.95033 0.98692 1.69921 1.38118 1.13510 1.31519 0.86478 0.78141 0.80378 0.82618 1.19824 1.20959 1.20867 1.20108 0.88291 0.80769 0.81627 1.90678 1.13467 1.62765 1.72011 1.22109 0.94065 0.98087 0.95202 1.60783 1.25458 1.30344 1.09827 1.21979 0.91323 0.94486 0.99340 1.30094 1.07955 1.14338 1.18871 1.08294 0.76873 0.77382 0.78460 1.93587 1.50671 1.86610 1.63553 1.93582 1.73577 1.42883 1.84062 1.30182 1.15031 1.18609 1.08699 1.21768 0.94833 1.00174 0.89625 0.87561 0.86399 0.88619 0.90727 0.94703 0.93446 0.92657 0.87730 0.91415 0.92958 0.85762 0.83559 0.84513 0.83845 0.84672 0.88314 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.02 18.54 42.15 0.78 -5.24 16 2 C 0.22 2.30 15.43 -20.76 -0.32 1.98 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 4 C 0.12 1.32 5.17 -4.04 -0.02 1.30 16 5 N -0.60 -9.61 2.46 -175.06 -0.43 -10.04 16 6 C 0.25 5.38 5.16 -5.20 -0.03 5.36 16 7 C -0.53 -13.32 9.39 -34.44 -0.32 -13.64 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -24.53 13.29 55.43 0.74 -23.80 16 11 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 8.01 7.22 -10.98 -0.08 7.93 16 16 O -0.51 -10.38 13.91 5.55 0.08 -10.31 16 17 C 0.04 0.38 4.00 -4.97 -0.02 0.36 16 18 N -0.54 -5.69 4.19 -236.57 -0.99 -6.68 16 19 C 0.06 0.66 4.94 -3.97 -0.02 0.64 16 20 C -0.58 -5.79 6.58 37.25 0.25 -5.55 16 21 S 2.41 23.51 5.34 -107.50 -0.57 22.93 16 22 O -0.95 -12.41 18.11 -57.81 -1.05 -13.46 16 23 O -0.94 -11.99 18.10 -57.81 -1.05 -13.03 16 24 C -0.60 -4.13 6.58 37.25 0.24 -3.89 16 25 C 0.06 0.49 5.40 -3.97 -0.02 0.47 16 26 H 0.11 0.69 7.25 -51.93 -0.38 0.31 16 27 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 30 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.10 0.77 6.91 -51.93 -0.36 0.41 16 34 H 0.07 0.61 7.39 -51.93 -0.38 0.23 16 35 H 0.05 0.54 7.93 -51.93 -0.41 0.13 16 36 H 0.12 1.83 5.61 -51.92 -0.29 1.54 16 37 H 0.15 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.55 7.77 -51.93 -0.40 0.15 16 42 H 0.06 0.41 7.93 -51.93 -0.41 0.00 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -36.40 363.78 -8.50 -44.90 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.85 Total: -2.10 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.62 Total: -4.09 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.10 Total: -45.75 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -2.02 Total: -36.80 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 23.51 SS G_CDS: -0.57 Total: 22.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.40 -8.50 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.926 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds