Wall clock time and date at job start Tue Mar 31 2020 04:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 119.99537 * 2 1 4 4 H 1.48499 * 109.47320 * 273.62816 * 3 2 1 5 5 H 1.48498 * 109.47184 * 33.63327 * 3 2 1 6 6 H 1.48506 * 109.47098 * 153.62762 * 3 2 1 7 7 C 1.38951 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99890 * 341.21383 * 7 2 1 9 9 N 1.37100 * 119.99667 * 161.21639 * 7 2 1 10 10 C 1.34768 * 120.00257 * 320.24917 * 9 7 2 11 11 O 1.21292 * 120.00438 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00263 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.47613 * 179.97438 * 12 10 9 14 14 C 1.38271 * 119.94094 * 89.99539 * 13 12 10 15 15 C 1.38148 * 120.05146 * 180.27706 * 14 13 12 16 16 C 1.38731 * 119.94279 * 359.45867 * 15 14 13 17 17 O 1.35905 * 120.05347 * 180.25062 * 16 15 14 18 18 C 1.42899 * 116.99705 * 0.31676 * 17 16 15 19 19 F 1.39896 * 109.47477 * 59.99982 * 18 17 16 20 20 F 1.39905 * 109.46762 * 179.97438 * 18 17 16 21 21 F 1.39902 * 109.47128 * 299.99689 * 18 17 16 22 22 C 1.38726 * 119.88925 * 0.56379 * 16 15 14 23 23 C 1.38137 * 119.94818 * 359.71064 * 22 16 15 24 24 C 1.46503 * 119.99961 * 140.25473 * 9 7 2 25 25 C 1.53002 * 117.49740 * 2.39095 * 24 9 7 26 26 C 1.53006 * 117.49541 * 293.73271 * 24 9 7 27 27 H 0.96994 * 120.00302 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47657 * 60.00234 * 12 10 9 29 29 H 1.09002 * 109.47254 * 300.00223 * 12 10 9 30 30 H 1.07996 * 119.97128 * 0.02562 * 14 13 12 31 31 H 1.07996 * 120.02073 * 179.70355 * 15 14 13 32 32 H 1.08005 * 120.02886 * 179.68338 * 22 16 15 33 33 H 1.08001 * 119.98120 * 179.97438 * 23 22 16 34 34 H 1.08992 * 115.55417 * 148.06076 * 24 9 7 35 35 H 1.08999 * 117.49863 * 0.02562 * 25 24 9 36 36 H 1.08999 * 117.50099 * 145.02325 * 25 24 9 37 37 H 1.09000 * 117.49558 * 214.98015 * 26 24 9 38 38 H 1.08994 * 117.50220 * 359.97413 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4188 2.0909 -1.3972 5 1 1.4859 2.6293 0.7755 6 1 3.5819 1.4195 0.6219 7 6 2.0089 -1.2033 -0.0005 8 1 1.5122 -2.1138 0.3002 9 7 3.3252 -1.2346 -0.3829 10 6 3.7432 -0.4844 -1.4215 11 8 2.9552 0.2189 -2.0178 12 6 5.1899 -0.5192 -1.8421 13 6 5.3936 0.4010 -3.0181 14 6 5.7262 1.7265 -2.8078 15 6 5.9078 2.5734 -3.8840 16 6 5.7671 2.0901 -5.1768 17 8 5.9502 2.9201 -6.2374 18 6 6.2929 4.2768 -5.9477 19 9 7.4940 4.3118 -5.2313 20 9 6.4436 4.9854 -7.1446 21 9 5.2771 4.8615 -5.1839 22 6 5.4329 0.7600 -5.3851 23 6 5.2468 -0.0815 -4.3056 24 6 4.2773 -2.0836 0.3375 25 6 3.7306 -2.9537 1.4711 26 6 4.5837 -1.7241 1.7928 27 1 -0.4850 0.8400 0.0004 28 1 5.4616 -1.5360 -2.1257 29 1 5.8175 -0.1934 -1.0125 30 1 5.8402 2.1009 -1.8013 31 1 6.1629 3.6097 -3.7191 32 1 5.3178 0.3826 -6.3906 33 1 4.9861 -1.1171 -4.4671 34 1 5.0909 -2.4913 -0.2622 35 1 2.6625 -2.8948 1.6806 36 1 4.1849 -3.9337 1.6174 37 1 5.5989 -1.8956 2.1505 38 1 4.0773 -0.8557 2.2141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058357957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:51 Heat of formation + Delta-G solvation = -155.530521 kcal Electronic energy + Delta-G solvation = -28335.846771 eV Core-core repulsion = 23730.433672 eV Total energy + Delta-G solvation = -4605.413099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.103 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -50.58363 -48.32139 -48.16314 -40.32665 -39.26051 -37.75184 -36.36923 -33.01966 -32.16399 -31.33339 -31.06843 -27.82116 -25.93363 -24.47864 -22.98804 -22.22823 -21.82361 -21.28620 -19.75350 -19.30862 -19.28536 -19.06503 -17.12585 -16.75607 -16.26543 -15.82884 -15.57565 -15.32915 -15.06179 -14.95744 -14.63481 -14.55704 -14.44335 -14.29122 -14.18232 -14.07937 -13.80246 -13.44858 -13.33899 -13.27536 -13.04594 -12.52192 -11.97919 -11.78082 -11.55073 -11.41916 -11.16299 -10.95870 -10.75085 -10.37157 -10.06172 -9.99667 -9.64780 -8.99967 -8.66195 -8.50740 -8.25544 -7.53186 -6.20156 -3.97328 1.25553 1.35664 1.38558 2.71666 3.24839 3.43843 3.59571 3.64481 3.68362 3.78336 3.89387 4.35162 4.45057 4.62078 4.66525 4.75119 4.94793 5.09513 5.14065 5.35680 5.39757 5.43916 5.50242 5.58812 5.65098 5.76104 5.81650 6.01919 6.06989 6.11640 6.20102 6.29668 6.43464 6.62011 6.69247 6.80459 6.97072 7.81478 7.91859 8.73424 8.87078 9.40198 9.76373 10.83588 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.003551 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.891669 B = 7882.767744 C = 8524.760609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.090 3.910 3 Si 0.916 3.084 4 H -0.247 1.247 5 H -0.315 1.315 6 H -0.284 1.284 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.435 5.435 10 C 0.446 3.554 11 O -0.532 6.532 12 C -0.099 4.099 13 C -0.061 4.061 14 C -0.069 4.069 15 C -0.186 4.186 16 C 0.089 3.911 17 O -0.312 6.312 18 C 0.603 3.397 19 F -0.167 7.167 20 F -0.136 7.136 21 F -0.164 7.164 22 C -0.120 4.120 23 C -0.069 4.069 24 C 0.062 3.938 25 C -0.172 4.172 26 C -0.199 4.199 27 H 0.272 0.728 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.341 2.586 -7.546 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.119 4.119 3 Si 0.748 3.252 4 H -0.173 1.173 5 H -0.245 1.245 6 H -0.210 1.210 7 C -0.475 4.475 8 H 0.114 0.886 9 N -0.155 5.155 10 C 0.236 3.764 11 O -0.414 6.414 12 C -0.140 4.140 13 C -0.061 4.061 14 C -0.087 4.087 15 C -0.205 4.205 16 C 0.048 3.952 17 O -0.232 6.232 18 C 0.512 3.488 19 F -0.149 7.149 20 F -0.117 7.117 21 F -0.146 7.146 22 C -0.138 4.138 23 C -0.087 4.087 24 C -0.043 4.043 25 C -0.210 4.210 26 C -0.238 4.238 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.735 3.004 -8.043 17.925 hybrid contribution 0.381 1.185 0.307 1.282 sum 16.116 4.189 -7.736 18.361 Atomic orbital electron populations 1.69730 1.06876 1.28246 1.45248 1.25308 0.94956 0.99554 0.92066 0.86303 0.78607 0.81972 0.78282 1.17330 1.24533 1.21000 1.18777 0.83273 0.95981 1.49514 0.88559 1.43148 1.07799 1.39167 1.25387 1.20064 0.89227 0.85183 0.81890 1.90560 1.55258 1.41008 1.54615 1.20696 0.97135 0.99719 0.96401 1.19519 0.97963 0.94243 0.94413 1.20800 0.96827 0.92573 0.98484 1.21377 1.06640 1.00919 0.91561 1.18626 1.02352 0.89883 0.84348 1.86378 1.85078 1.17265 1.34487 1.19365 0.75058 0.80133 0.74245 1.93288 1.47115 1.96148 1.78384 1.93289 1.95435 1.76777 1.46212 1.93323 1.60538 1.84889 1.75846 1.20307 1.03520 0.89558 1.00444 1.20852 0.96994 0.99938 0.90902 1.21829 0.95660 0.98930 0.87916 1.23135 1.01651 0.93875 1.02327 1.23288 0.99928 1.00332 1.00275 0.91800 0.88763 0.89080 0.85402 0.85272 0.84610 0.84558 0.87073 0.87115 0.89410 0.89482 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.96 55.50 0.77 -25.61 16 2 C 0.09 2.63 4.88 -17.47 -0.09 2.55 16 3 Si 0.92 24.42 24.59 -169.99 -4.18 20.24 16 4 H -0.25 -6.94 6.09 56.52 0.34 -6.59 16 5 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.35 -9.57 8.77 -14.93 -0.13 -9.70 16 8 H 0.10 2.75 6.95 -52.49 -0.36 2.38 16 9 N -0.43 -9.96 2.56 -107.73 -0.28 -10.24 16 10 C 0.45 10.04 5.88 -10.99 -0.06 9.97 16 11 O -0.53 -14.23 10.92 5.55 0.06 -14.17 16 12 C -0.10 -1.61 4.46 -29.03 -0.13 -1.74 16 13 C -0.06 -0.98 4.37 -104.60 -0.46 -1.44 16 14 C -0.07 -1.10 9.69 -39.60 -0.38 -1.48 16 15 C -0.19 -2.79 8.26 -39.43 -0.33 -3.12 16 16 C 0.09 1.31 6.48 -39.22 -0.25 1.05 16 17 O -0.31 -4.19 10.37 -19.44 -0.20 -4.39 16 18 C 0.60 7.23 3.42 101.05 0.35 7.58 16 19 F -0.17 -1.92 15.58 2.25 0.04 -1.88 16 20 F -0.14 -1.48 17.53 2.25 0.04 -1.44 16 21 F -0.16 -2.13 15.54 2.25 0.04 -2.09 16 22 C -0.12 -1.65 9.99 -39.44 -0.39 -2.05 16 23 C -0.07 -1.00 9.69 -39.61 -0.38 -1.39 16 24 C 0.06 1.09 5.85 -67.92 -0.40 0.70 16 25 C -0.17 -2.81 9.80 -26.69 -0.26 -3.07 16 26 C -0.20 -3.21 10.37 -26.69 -0.28 -3.49 16 27 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 28 H 0.09 1.24 7.51 -51.93 -0.39 0.85 16 29 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 30 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.13 1.75 5.10 -52.49 -0.27 1.48 16 32 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.11 1.55 6.99 -51.93 -0.36 1.19 16 35 H 0.11 2.10 6.48 -51.93 -0.34 1.77 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -33.02 331.27 -5.79 -38.81 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.87 Total: 1.42 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -3.20 Total: -5.62 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.50 Total: -35.85 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.14 Total: -18.56 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -4.18 Total: 20.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.02 -5.79 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058357957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.721 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds