Wall clock time and date at job start Tue Mar 31 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47078 * 2 1 4 4 N 1.46502 * 109.46850 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99978 * 269.99945 * 4 3 2 6 6 O 1.21285 * 120.00349 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.00028 * 359.97438 * 5 4 3 8 8 S 1.80992 * 109.47262 * 180.02562 * 7 5 4 9 9 C 1.76196 * 100.00031 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00107 * 0.02562 * 9 8 7 11 11 C 1.38804 * 119.99892 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00156 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99703 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47538 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47073 * 120.00428 * 13 11 9 16 16 H 1.48508 * 109.47024 * 240.00087 * 13 11 9 17 17 C 1.39612 * 120.00086 * 89.99546 * 4 3 2 18 18 C 1.37820 * 120.29420 * 89.97606 * 17 4 3 19 19 C 1.39160 * 120.75106 * 179.97438 * 18 17 4 20 20 C 1.36171 * 121.08464 * 0.06467 * 19 18 17 21 21 C 1.40515 * 119.94743 * 359.95803 * 20 19 18 22 22 C 1.40581 * 121.20133 * 180.02562 * 21 20 19 23 23 C 1.36094 * 119.65955 * 179.97438 * 22 21 20 24 24 C 1.39354 * 120.97658 * 0.02562 * 23 22 21 25 25 C 1.36149 * 120.96406 * 359.97438 * 24 23 22 26 26 C 1.40373 * 119.66958 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47363 * 300.00337 * 1 2 3 28 28 H 1.09004 * 109.46765 * 60.00312 * 1 2 3 29 29 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47162 * 239.99137 * 2 1 3 31 31 H 1.09004 * 109.46765 * 119.99688 * 2 1 3 32 32 H 1.08993 * 109.47322 * 59.99691 * 3 2 1 33 33 H 1.08997 * 109.46682 * 299.99579 * 3 2 1 34 34 H 1.08997 * 109.47251 * 300.00929 * 7 5 4 35 35 H 1.09007 * 109.46636 * 60.00407 * 7 5 4 36 36 H 0.97004 * 119.99948 * 180.02562 * 12 11 9 37 37 H 1.08005 * 119.62711 * 0.04704 * 18 17 4 38 38 H 1.07998 * 119.46247 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.02721 * 180.22630 * 20 19 18 40 40 H 1.07996 * 120.16703 * 359.96447 * 22 21 20 41 41 H 1.08000 * 119.51367 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.52065 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.17176 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4426 1.1681 6 8 5.3913 1.4430 1.1687 7 6 3.4243 1.4434 2.4730 8 16 4.5999 1.4442 3.8492 9 6 3.4792 1.4443 5.2088 10 1 2.4141 1.4435 5.0306 11 6 3.9654 1.4443 6.5089 12 7 5.2636 1.4448 6.7261 13 14 2.7773 1.4437 7.9503 14 1 1.3820 1.4426 7.4419 15 1 3.0031 0.2312 8.7775 16 1 3.0022 2.6563 8.7777 17 6 4.2036 1.4422 -1.2082 18 6 4.5511 2.6320 -1.8106 19 6 5.2479 2.6428 -3.0152 20 6 5.6040 1.4821 -3.6318 21 6 5.2684 0.2475 -3.0508 22 6 5.6233 -0.9666 -3.6642 23 6 5.2827 -2.1444 -3.0736 24 6 4.5853 -2.1666 -1.8673 25 6 4.2253 -1.0104 -1.2450 26 6 4.5594 0.2238 -1.8244 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 2.7979 2.3336 2.5300 35 1 2.7973 0.5536 2.5307 36 1 5.6034 1.4444 7.6347 37 1 4.2806 3.5667 -1.3420 38 1 5.5100 3.5872 -3.4688 39 1 6.1478 1.5104 -4.5644 40 1 6.1633 -0.9645 -4.5995 41 1 5.5562 -3.0757 -3.5471 42 1 4.3267 -3.1147 -1.4195 43 1 3.6854 -1.0425 -0.3102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063951937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:00 Heat of formation + Delta-G solvation = 8.420358 kcal Electronic energy + Delta-G solvation = -25355.213351 eV Core-core repulsion = 21877.352401 eV Total energy + Delta-G solvation = -3477.860950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95388 -39.17161 -36.59414 -36.07717 -33.34760 -32.44325 -31.83355 -30.38068 -29.75341 -28.19034 -26.16111 -25.50394 -23.54189 -23.06986 -22.27925 -21.78110 -19.32533 -17.76512 -17.58918 -17.39738 -16.65839 -16.32779 -15.71338 -15.14282 -14.81897 -14.75381 -14.35322 -14.20810 -13.93492 -13.66139 -13.58539 -13.51128 -13.18633 -12.82034 -12.62742 -12.32163 -12.22630 -12.12214 -11.85983 -11.49507 -11.33516 -11.10206 -11.08349 -11.02781 -11.00682 -10.79104 -10.76618 -9.95005 -9.79670 -9.43912 -9.08750 -8.78404 -8.67392 -8.24220 -7.86710 -6.52199 -6.23042 -3.93957 0.42558 0.96525 1.94959 2.82173 2.92507 2.97576 3.20504 3.24105 3.29807 3.54783 4.02066 4.18500 4.59091 4.73460 4.75452 4.81775 4.85757 4.91684 4.98681 5.05408 5.12204 5.17694 5.25527 5.29142 5.34589 5.37992 5.48506 5.50898 5.59406 5.65584 5.82206 5.87366 5.89585 5.94727 6.01359 6.05972 6.07790 6.16747 6.20683 6.31295 6.45344 6.54818 6.59828 6.86958 7.06025 7.41092 7.58522 8.33932 8.51536 9.22336 10.84387 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.003262 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.367105 B = 8582.270078 C = 8917.428685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C 0.113 3.887 4 N -0.584 5.584 5 C 0.535 3.465 6 O -0.499 6.499 7 C -0.148 4.148 8 S -0.060 6.060 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.165 3.835 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.109 4.109 21 C -0.046 4.046 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.095 4.095 26 C -0.045 4.045 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -2.836 -22.398 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.009 4.009 4 N -0.317 5.317 5 C 0.324 3.676 6 O -0.371 6.371 7 C -0.299 4.299 8 S 0.167 5.833 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.502 5.502 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.075 3.925 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.047 4.047 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.113 4.113 26 C -0.047 4.047 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.825 -2.822 -22.211 22.903 hybrid contribution -2.141 -0.016 1.013 2.369 sum -6.966 -2.837 -21.198 22.493 Atomic orbital electron populations 1.21686 0.94878 1.02065 1.01965 1.22188 0.96486 0.97333 1.03124 1.21748 0.78175 0.97368 1.03640 1.45504 1.06492 1.76219 1.03467 1.20508 0.87986 0.75018 0.84115 1.90736 1.13662 1.46201 1.86493 1.23581 1.04565 1.04940 0.96797 1.85457 1.07916 1.96703 0.93255 1.22887 0.94311 1.58932 0.92134 0.90857 1.24991 0.95661 0.94523 0.98374 1.70027 1.11755 1.46857 1.21563 0.86124 0.80358 0.77920 0.81137 1.19589 1.20562 1.20556 1.17438 0.96209 0.91981 0.86874 1.21314 0.98479 0.97587 0.95677 1.20692 0.98258 0.98464 0.95049 1.21000 1.00172 0.91512 1.00026 1.17979 0.98425 0.94060 0.94186 1.20974 1.00387 0.91586 0.99940 1.20842 0.98515 0.98063 0.95782 1.20869 0.98969 0.98340 0.95751 1.21148 0.98968 0.91516 0.99652 1.18231 0.98516 0.93398 0.94530 0.92249 0.92721 0.92387 0.91077 0.91092 0.89324 0.90355 0.89083 0.89058 0.92222 0.85634 0.85607 0.85512 0.85604 0.86066 0.85977 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.15 -1.62 4.86 -26.73 -0.13 -1.75 16 3 C 0.11 1.29 5.20 -4.04 -0.02 1.27 16 4 N -0.58 -8.83 1.72 -113.19 -0.20 -9.02 16 5 C 0.54 10.44 7.66 -10.98 -0.08 10.36 16 6 O -0.50 -11.89 15.83 5.55 0.09 -11.80 16 7 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 8 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 9 C -0.53 -15.09 9.50 30.94 0.29 -14.79 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 13 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.17 2.47 4.46 -83.39 -0.37 2.09 16 18 C -0.11 -1.48 9.92 -39.39 -0.39 -1.87 16 19 C -0.11 -1.17 9.94 -39.98 -0.40 -1.57 16 20 C -0.11 -1.19 9.75 -39.47 -0.38 -1.57 16 21 C -0.05 -0.58 5.74 -106.84 -0.61 -1.20 16 22 C -0.11 -1.18 9.77 -39.47 -0.39 -1.57 16 23 C -0.11 -1.19 9.95 -39.94 -0.40 -1.59 16 24 C -0.12 -1.43 9.95 -39.92 -0.40 -1.83 16 25 C -0.09 -1.32 7.97 -39.53 -0.32 -1.64 16 26 C -0.05 -0.66 5.75 -106.70 -0.61 -1.27 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.77 6.11 -51.93 -0.32 0.45 16 31 H 0.07 0.85 7.06 -51.93 -0.37 0.48 16 32 H 0.09 0.99 6.44 -51.93 -0.33 0.66 16 33 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 35 H 0.09 1.70 7.19 -51.91 -0.37 1.33 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.13 1.84 5.51 -52.49 -0.29 1.56 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -34.75 369.39 -10.64 -45.39 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.83 Total: 1.46 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.77 Total: -18.67 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.54 Total: -34.37 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.75 -10.64 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063951937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.809 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds