Wall clock time and date at job start Tue Mar 31 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48510 * 109.47147 * 239.99765 * 3 2 1 5 5 H 1.48498 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47474 * 119.99868 * 3 2 1 7 7 C 1.39009 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99697 * 197.87597 * 7 2 1 9 9 N 1.36783 * 120.00253 * 17.87700 * 7 2 1 10 10 C 1.37823 * 119.90429 * 28.36680 * 9 7 2 11 11 C 1.33031 * 121.87590 * 179.97438 * 10 9 7 12 12 N 1.38194 * 121.15881 * 0.11588 * 11 10 9 13 13 N 1.39901 * 132.95855 * 179.97438 * 12 11 10 14 14 C 1.32108 * 108.77883 * 179.97438 * 13 12 11 15 15 C 1.48409 * 125.70002 * 179.97438 * 14 13 12 16 16 C 1.39341 * 120.09205 * 325.02602 * 15 14 13 17 17 C 1.37983 * 119.90562 * 180.02562 * 16 15 14 18 18 C 1.38543 * 120.09346 * 0.02562 * 17 16 15 19 19 F 1.35093 * 119.90494 * 179.97438 * 18 17 16 20 20 C 1.38548 * 120.18786 * 0.25270 * 18 17 16 21 21 C 1.37978 * 120.09612 * 359.44498 * 20 18 17 22 22 C 1.40085 * 108.60427 * 0.23149 * 14 13 12 23 23 C 1.50697 * 126.25186 * 179.75245 * 22 14 13 24 24 O 1.42904 * 109.47476 * 90.02107 * 23 22 14 25 25 C 1.37281 * 119.39202 * 359.91181 * 12 11 10 26 26 C 1.35124 * 119.91106 * 208.39163 * 9 7 2 27 27 O 1.21774 * 120.75712 * 359.97145 * 26 9 7 28 28 H 0.96999 * 119.99575 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.06609 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.42263 * 180.02562 * 11 10 9 31 31 H 1.08004 * 120.05031 * 0.03889 * 16 15 14 32 32 H 1.07997 * 119.95041 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.95006 * 179.70570 * 20 18 17 34 34 H 1.08007 * 120.04969 * 180.29793 * 21 20 18 35 35 H 1.09001 * 109.47104 * 210.02304 * 23 22 14 36 36 H 1.09004 * 109.47095 * 330.02030 * 23 22 14 37 37 H 0.96702 * 113.99967 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.1011 1.6964 -1.2126 5 1 1.2823 2.7464 -0.0006 6 1 3.1010 1.6965 1.2124 7 6 2.0084 -1.2038 0.0005 8 1 3.0493 -1.2262 0.2877 9 7 1.3740 -2.3600 -0.3626 10 6 0.3178 -2.3157 -1.2469 11 6 -0.3267 -3.4156 -1.6271 12 7 0.0364 -4.6594 -1.1463 13 7 -0.4558 -5.9494 -1.3716 14 6 0.2536 -6.8058 -0.6584 15 6 0.0505 -8.2753 -0.6167 16 6 -1.2349 -8.8057 -0.7058 17 6 -1.4194 -10.1726 -0.6661 18 6 -0.3288 -11.0173 -0.5372 19 9 -0.5139 -12.3549 -0.4982 20 6 0.9504 -10.4938 -0.4424 21 6 1.1445 -9.1285 -0.4876 22 6 1.2259 -6.0944 0.0565 23 6 2.2456 -6.6803 0.9988 24 8 3.4301 -7.0131 0.2720 25 6 1.0817 -4.7611 -0.2622 26 6 1.7843 -3.5423 0.1470 27 8 2.7164 -3.5935 0.9290 28 1 -0.4849 0.8401 -0.0004 29 1 0.0049 -1.3610 -1.6430 30 1 -1.1490 -3.3351 -2.3226 31 1 -2.0857 -8.1480 -0.8061 32 1 -2.4154 -10.5845 -0.7348 33 1 1.7974 -11.1557 -0.3373 34 1 2.1425 -8.7215 -0.4185 35 1 2.4868 -5.9511 1.7723 36 1 1.8385 -7.5794 1.4614 37 1 4.1311 -7.3966 0.8166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065215757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:07 Heat of formation + Delta-G solvation = 3.099742 kcal Electronic energy + Delta-G solvation = -27050.391317 eV Core-core repulsion = 22902.546129 eV Total energy + Delta-G solvation = -4147.845189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.096 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.96343 -41.45314 -39.32828 -38.41991 -36.62040 -35.88307 -33.99494 -32.15367 -31.29526 -30.67853 -30.31450 -28.28024 -26.51326 -24.82343 -23.67082 -23.07916 -22.25997 -21.44396 -19.80531 -18.44031 -17.83017 -17.69180 -17.07262 -16.82944 -16.12398 -15.68845 -15.65347 -15.48334 -15.19389 -14.59932 -14.52251 -14.21095 -13.92332 -13.68532 -13.52090 -13.33849 -13.18132 -12.72292 -12.68680 -12.38031 -12.11207 -11.91507 -11.58886 -11.36656 -11.21583 -11.07145 -10.84536 -10.70867 -10.38703 -9.94921 -9.65272 -9.22386 -9.15833 -9.11812 -8.57448 -8.38659 -7.20520 -6.81773 -4.58416 0.86367 1.20699 1.66132 2.27273 2.79673 2.91189 2.95919 2.97716 2.98893 3.58975 3.70495 4.03683 4.11109 4.19035 4.53362 4.69030 4.72601 4.80494 4.95749 5.03458 5.22990 5.28364 5.37388 5.42366 5.80347 5.82919 5.88376 5.94887 6.06210 6.07973 6.14518 6.29543 6.43417 6.48114 6.62950 6.80393 6.92980 6.97842 7.27985 7.60851 7.85862 7.97193 8.07116 8.43000 8.61766 9.13930 10.01377 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.002992 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.365446 B = 9356.535842 C =10151.822862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.047 3.953 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.337 4.337 8 H 0.118 0.882 9 N -0.334 5.334 10 C 0.138 3.862 11 C -0.082 4.082 12 N -0.238 5.238 13 N -0.293 5.293 14 C 0.107 3.893 15 C -0.008 4.008 16 C -0.066 4.066 17 C -0.156 4.156 18 C 0.095 3.905 19 F -0.143 7.143 20 C -0.155 4.155 21 C -0.071 4.071 22 C -0.193 4.193 23 C 0.157 3.843 24 O -0.566 6.566 25 C 0.036 3.964 26 C 0.506 3.494 27 O -0.533 6.533 28 H 0.286 0.714 29 H 0.187 0.813 30 H 0.165 0.835 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -11.446 -1.363 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.464 4.464 8 H 0.136 0.864 9 N -0.035 5.035 10 C 0.009 3.991 11 C -0.204 4.204 12 N -0.011 5.011 13 N -0.121 5.121 14 C -0.049 4.049 15 C -0.010 4.010 16 C -0.085 4.085 17 C -0.175 4.175 18 C 0.075 3.925 19 F -0.122 7.122 20 C -0.174 4.174 21 C -0.090 4.090 22 C -0.207 4.207 23 C 0.079 3.921 24 O -0.371 6.371 25 C -0.093 4.093 26 C 0.301 3.699 27 O -0.412 6.412 28 H 0.097 0.903 29 H 0.204 0.796 30 H 0.182 0.818 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.358 -10.921 -2.221 11.392 hybrid contribution 0.817 0.379 0.988 1.337 sum -1.541 -10.542 -1.233 10.725 Atomic orbital electron populations 1.69813 1.06452 1.29900 1.42086 1.25638 0.95634 1.00989 0.94017 0.85723 0.79178 0.78449 0.80051 1.18848 1.20156 1.18907 1.19933 0.97158 0.82078 1.47272 0.86406 1.41462 1.24426 1.07273 1.30318 1.21713 0.88920 0.98624 0.89883 1.20466 1.09191 0.78441 1.12276 1.46120 1.21163 1.05297 1.28527 1.77647 1.23481 0.85414 1.25563 1.20131 0.95577 0.92229 0.96940 1.17828 0.93410 0.88415 1.01317 1.21127 0.96910 0.94051 0.96375 1.21030 0.98462 0.93369 1.04655 1.17813 0.94523 0.77004 1.03127 1.91480 1.96168 1.30592 1.93948 1.21047 0.95726 0.95988 1.04592 1.21419 1.00018 0.91629 0.95973 1.19201 1.02913 0.89473 1.09093 1.20173 0.83154 0.97272 0.91459 1.86580 1.26203 1.84950 1.39370 1.21679 0.94187 0.95791 0.97691 1.17317 0.86793 0.82044 0.83752 1.90724 1.29534 1.85349 1.35605 0.90316 0.79610 0.81758 0.84483 0.84607 0.84503 0.83151 0.91918 0.93365 0.78218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.60 11.17 55.50 0.62 -18.98 16 2 C 0.05 1.07 5.00 -17.48 -0.09 0.98 16 3 Si 0.94 17.63 29.59 -169.99 -5.03 12.60 16 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.34 -8.37 9.11 -15.06 -0.14 -8.51 16 8 H 0.12 2.99 7.58 -52.48 -0.40 2.59 16 9 N -0.33 -8.22 2.78 -62.92 -0.18 -8.39 16 10 C 0.14 2.97 9.00 -16.66 -0.15 2.82 16 11 C -0.08 -1.64 11.14 -16.49 -0.18 -1.82 16 12 N -0.24 -5.16 3.99 -9.43 -0.04 -5.20 16 13 N -0.29 -5.98 12.66 33.35 0.42 -5.55 16 14 C 0.11 2.02 6.70 -82.87 -0.56 1.47 16 15 C -0.01 -0.12 5.74 -104.89 -0.60 -0.72 16 16 C -0.07 -0.87 9.74 -39.26 -0.38 -1.25 16 17 C -0.16 -1.80 10.01 -39.56 -0.40 -2.20 16 18 C 0.09 1.13 7.30 -39.35 -0.29 0.84 16 19 F -0.14 -1.71 17.26 2.25 0.04 -1.67 16 20 C -0.15 -1.78 10.01 -39.56 -0.40 -2.17 16 21 C -0.07 -0.95 8.44 -39.27 -0.33 -1.28 16 22 C -0.19 -3.94 5.77 -104.08 -0.60 -4.54 16 23 C 0.16 2.70 6.13 36.00 0.22 2.92 16 24 O -0.57 -9.04 12.19 -35.23 -0.43 -9.47 16 25 C 0.04 0.82 6.94 -82.24 -0.57 0.25 16 26 C 0.51 12.80 7.60 -12.77 -0.10 12.70 16 27 O -0.53 -14.36 15.94 5.12 0.08 -14.28 16 28 H 0.29 6.08 8.31 -40.82 -0.34 5.75 16 29 H 0.19 3.81 6.18 -52.49 -0.32 3.49 16 30 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 31 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 2.02 5.47 -52.48 -0.29 1.73 16 35 H 0.06 1.16 7.34 -51.93 -0.38 0.78 16 36 H 0.05 0.68 7.08 -51.93 -0.37 0.32 16 37 H 0.37 3.86 9.12 45.56 0.42 4.27 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -29.77 328.84 -6.28 -36.05 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -2.17 Total: 10.46 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -4.56 Total: -0.52 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.83 Total: -38.13 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.35 Total: -23.75 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.77 -6.28 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065215757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.154 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds