Wall clock time and date at job start Tue Mar 31 2020 05:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48503 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47080 * 299.99645 * 3 2 1 6 6 H 1.48506 * 109.47165 * 59.99578 * 3 2 1 7 7 C 1.37874 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47484 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47459 * 180.02562 * 21 20 19 23 23 C 1.38418 * 122.54035 * 89.99726 * 22 21 20 24 24 C 1.33395 * 114.92200 * 179.97438 * 23 22 21 25 25 S 1.75886 * 109.59370 * 0.02562 * 24 23 22 26 26 C 1.33390 * 122.53671 * 269.71521 * 22 21 20 27 27 H 0.96999 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 29 29 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 30 30 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 31 31 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 32 32 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.47529 * 300.00389 * 20 19 18 34 34 H 1.09003 * 109.46889 * 59.99897 * 20 19 18 35 35 H 1.08997 * 109.47189 * 300.00762 * 21 20 19 36 36 H 1.08999 * 109.46538 * 60.00232 * 21 20 19 37 37 H 1.08001 * 122.54443 * 0.02562 * 23 22 21 38 38 H 1.08000 * 125.20364 * 180.02562 * 24 23 22 39 39 H 1.07999 * 125.20946 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7411 -4.2325 -1.1344 12 6 3.5499 -5.1868 -0.7715 13 6 3.5863 -5.2299 0.6391 14 6 2.7220 -4.2198 1.1051 15 7 2.5792 -4.0524 2.4188 16 6 3.2323 -4.8157 3.2675 17 7 4.0523 -5.7756 2.8777 18 6 4.2614 -6.0207 1.5888 19 7 5.1206 -7.0257 1.1901 20 6 5.8142 -7.8372 2.1933 21 6 6.6972 -8.8710 1.4914 22 6 7.4102 -9.7062 2.5234 23 6 6.8751 -10.8766 3.0330 24 6 7.6354 -11.4949 3.9381 25 16 9.1164 -10.5797 4.1885 26 6 8.6073 -9.3764 3.0108 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8902 30 1 4.1029 -5.8330 -1.4371 31 1 3.0926 -4.6514 4.3258 32 1 5.2649 -7.1942 0.2458 33 1 6.4340 -7.1929 2.8167 34 1 5.0810 -8.3494 2.8164 35 1 6.0772 -9.5153 0.8682 36 1 7.4304 -8.3591 0.8681 37 1 5.9152 -11.2607 2.7210 38 1 7.3806 -12.4164 4.4403 39 1 9.1759 -8.5030 2.7277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:56 Heat of formation + Delta-G solvation = 146.598999 kcal Electronic energy + Delta-G solvation = -23744.363431 eV Core-core repulsion = 20201.246764 eV Total energy + Delta-G solvation = -3543.116667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35890 -38.99425 -38.35005 -36.38612 -33.80459 -32.83705 -31.44914 -31.21607 -29.70316 -28.27341 -27.18507 -24.69511 -23.93441 -23.27732 -22.65176 -21.90617 -20.12867 -19.06651 -18.09347 -17.70962 -17.32957 -16.66300 -16.31107 -15.75578 -15.33884 -15.24790 -14.67671 -14.50771 -14.07283 -13.73897 -13.45619 -13.40657 -13.34445 -13.18479 -12.84020 -12.38455 -12.17140 -12.05639 -11.84028 -11.63814 -11.12651 -11.08461 -10.97141 -10.85534 -10.75525 -10.28042 -10.06981 -9.79844 -9.24085 -9.15437 -8.74378 -8.65218 -8.58791 -8.20164 -7.61845 -6.21055 -4.27305 0.65610 1.31751 1.32723 1.64085 1.96469 2.30398 2.96552 3.05870 3.16709 3.24017 3.31024 3.37799 4.32174 4.42020 4.47832 4.55867 4.65909 4.76217 4.81224 4.82939 5.01776 5.05020 5.14526 5.20474 5.22091 5.32789 5.53094 5.56519 5.71723 5.73150 5.83347 6.05200 6.13320 6.33976 6.69488 6.93493 7.04476 7.12033 7.25949 7.52000 7.73594 7.91697 7.94283 8.24642 8.73484 8.84929 9.37672 10.87224 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002067 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.340485 B =13544.839049 C =13745.373127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.068 3.932 13 C -0.338 4.338 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.367 3.633 17 N -0.618 5.618 18 C 0.509 3.491 19 N -0.709 5.709 20 C 0.138 3.862 21 C -0.074 4.074 22 C -0.096 4.096 23 C -0.128 4.128 24 C -0.212 4.212 25 S 0.091 5.909 26 C -0.206 4.206 27 H 0.267 0.733 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.182 0.818 31 H 0.195 0.805 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.923 -23.217 5.838 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.119 5.119 11 N -0.059 5.059 12 C -0.127 4.127 13 C -0.356 4.356 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.073 3.927 17 N -0.348 5.348 18 C 0.256 3.744 19 N -0.342 5.342 20 C 0.014 3.986 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.159 4.159 24 C -0.347 4.347 25 S 0.355 5.645 26 C -0.342 4.342 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.199 0.801 31 H 0.211 0.789 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 16.251 -22.363 6.767 28.460 hybrid contribution -0.300 0.555 -1.352 1.492 sum 15.951 -21.807 5.414 27.556 Atomic orbital electron populations 1.69927 1.05995 1.27510 1.49485 1.24904 0.94992 0.99384 0.94491 0.86286 0.79933 0.82547 0.77786 1.19716 1.20658 1.20582 1.21287 0.93573 0.89670 1.52522 0.92014 1.19801 0.85699 0.79889 0.99991 1.49453 1.35723 1.27886 0.98795 1.76935 1.11492 1.08113 1.09399 1.23362 0.99194 0.97829 0.92317 1.19616 1.12649 1.07959 0.95328 1.18944 0.91088 0.89967 0.88534 1.67519 1.29581 1.30833 0.99998 1.24412 0.85156 0.83991 0.99177 1.67951 1.26684 1.25643 1.14566 1.17886 0.84177 0.84102 0.88207 1.44288 1.46400 1.34408 1.09131 1.21242 0.94915 0.91800 0.90619 1.20519 0.98477 0.96493 0.95961 1.18697 0.94937 0.96721 1.00576 1.20127 1.01530 0.95643 0.98559 1.25612 0.98574 1.05277 1.05264 1.84350 1.20938 1.17760 1.41451 1.25536 1.00729 1.04500 1.03407 0.92326 0.92810 0.92232 0.80087 0.78889 0.75493 0.91311 0.91255 0.90108 0.90240 0.84083 0.81860 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.26 7.06 6.19 -5.19 -0.03 7.03 16 10 N -0.33 -7.99 3.63 -61.64 -0.22 -8.22 16 11 N -0.24 -5.22 12.45 30.80 0.38 -4.83 16 12 C 0.07 1.14 11.87 -17.11 -0.20 0.94 16 13 C -0.34 -6.12 6.14 -106.82 -0.66 -6.78 16 14 C 0.36 8.05 8.04 -156.24 -1.26 6.80 16 15 N -0.55 -11.80 10.47 -13.97 -0.15 -11.94 16 16 C 0.37 6.23 12.24 -92.11 -1.13 5.11 16 17 N -0.62 -9.93 9.69 -13.62 -0.13 -10.06 16 18 C 0.51 7.82 7.55 -154.85 -1.17 6.65 16 19 N -0.71 -7.52 5.68 -60.09 -0.34 -7.86 16 20 C 0.14 1.24 5.71 -4.04 -0.02 1.22 16 21 C -0.07 -0.47 5.58 -27.89 -0.16 -0.63 16 22 C -0.10 -0.70 5.05 -106.25 -0.54 -1.24 16 23 C -0.13 -0.90 9.98 -41.21 -0.41 -1.31 16 24 C -0.21 -1.40 11.23 29.04 0.33 -1.07 16 25 S 0.09 0.62 23.34 -107.50 -2.51 -1.89 16 26 C -0.21 -1.48 10.98 29.04 0.32 -1.16 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.18 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.41 3.31 8.34 -40.82 -0.34 2.97 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 36 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -33.73 358.39 -11.73 -45.46 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.53 Total: 0.57 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -5.35 Total: 1.72 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: 0.28 Total: -68.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.51 Total: -1.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.73 -11.73 -45.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.064 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds