Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47390 * 89.99794 * 11 9 7 13 13 H 1.48503 * 109.47067 * 210.00006 * 11 9 7 14 14 H 1.48504 * 109.47093 * 329.99809 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38264 * 119.94135 * 269.72771 * 18 15 5 20 20 C 1.38144 * 120.05444 * 179.72715 * 19 18 15 21 21 C 1.38737 * 119.94273 * 0.56574 * 20 19 18 22 22 O 1.35897 * 120.05433 * 179.68345 * 21 20 19 23 23 C 1.42897 * 117.00363 * 0.02562 * 22 21 20 24 24 C 1.38727 * 119.88463 * 359.70868 * 21 20 19 25 25 C 1.38140 * 119.94797 * 359.97438 * 24 21 20 26 26 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 28 28 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 29 29 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 30 30 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 31 31 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 32 32 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 33 33 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 34 34 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 35 35 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 36 36 H 1.08010 * 119.97397 * 359.97438 * 19 18 15 37 37 H 1.07997 * 120.03160 * 180.24936 * 20 19 18 38 38 H 1.09004 * 109.46984 * 59.99586 * 23 22 21 39 39 H 1.08995 * 109.47460 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.47218 * 300.00237 * 23 22 21 41 41 H 1.08004 * 120.02755 * 179.97438 * 24 21 20 42 42 H 1.08006 * 119.97130 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 5.1844 3.0607 -4.4484 11 14 7.7111 3.5227 -3.4101 12 1 8.6538 2.5984 -4.0900 13 1 7.7086 4.8316 -4.1116 14 1 8.1382 3.7171 -2.0011 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8341 -2.2327 -0.8027 20 6 0.6398 -2.8271 -1.1614 21 6 0.3434 -3.0326 -2.5011 22 8 -0.8279 -3.6230 -2.8562 23 6 -1.7083 -4.0064 -1.7980 24 6 1.2452 -2.6350 -3.4774 25 6 2.4353 -2.0351 -3.1137 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1765 0.0889 33 1 4.0654 0.7728 -3.3378 34 1 3.4456 2.1934 -2.4627 35 1 5.4820 3.6362 -5.1704 36 1 2.0675 -2.0771 0.2403 37 1 -0.0604 -3.1361 -0.3995 38 1 -1.9877 -3.1251 -1.2205 39 1 -2.6035 -4.4648 -2.2181 40 1 -1.2049 -4.7221 -1.1479 41 1 1.0171 -2.7943 -4.5210 42 1 3.1374 -1.7250 -3.8736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065624318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = -117.296048 kcal Electronic energy + Delta-G solvation = -27773.801375 eV Core-core repulsion = 23847.346938 eV Total energy + Delta-G solvation = -3926.454437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.14952 -38.02283 -37.31041 -36.45661 -35.45439 -35.02055 -32.53559 -31.12683 -30.25070 -29.49324 -27.53346 -26.74204 -25.89940 -23.17291 -22.70054 -22.34519 -21.49061 -18.61424 -18.11753 -17.32544 -16.68084 -16.50223 -16.23145 -16.09233 -15.96809 -15.58260 -15.15945 -14.77950 -14.56697 -14.39028 -13.79201 -13.46960 -13.33696 -13.07674 -12.76583 -12.62563 -12.48765 -12.10267 -11.98670 -11.77281 -11.52520 -11.32844 -11.30071 -11.27365 -11.06574 -10.98853 -10.79901 -10.57748 -10.48728 -10.27326 -9.96207 -9.74289 -9.52038 -8.84815 -8.46883 -8.41333 -8.01800 -6.04638 -4.08595 1.03349 1.33121 1.47759 3.07098 3.34451 3.40696 3.43493 3.54025 3.84469 4.06998 4.45106 4.59356 4.68939 4.80805 4.88611 4.92582 5.13523 5.19983 5.26858 5.30329 5.36643 5.48136 5.49805 5.55231 5.56726 5.59281 5.68942 5.72653 5.88848 6.07084 6.11615 6.30429 6.34025 6.42264 6.54214 6.76780 7.22691 7.27162 7.28081 7.43063 7.63431 7.93034 8.21925 8.94093 9.56681 11.03783 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.004281 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.863004 B = 6538.903692 C = 6874.808685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.036 3.964 4 C 0.125 3.875 5 N -0.979 5.979 6 C 0.257 3.743 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.273 1.273 15 S 2.694 3.306 16 O -0.950 6.950 17 O -0.979 6.979 18 C -0.700 4.700 19 C 0.064 3.936 20 C -0.247 4.247 21 C 0.170 3.830 22 O -0.317 6.317 23 C 0.026 3.974 24 C -0.182 4.182 25 C 0.022 3.978 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.134 0.866 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 -9.116 7.901 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C -0.042 4.042 4 C -0.001 4.001 5 N -0.817 5.817 6 C 0.135 3.865 7 C -0.568 4.568 8 H 0.080 0.920 9 C -0.139 4.139 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.198 1.198 15 S 2.784 3.216 16 O -0.940 6.940 17 O -0.970 6.970 18 C -0.785 4.785 19 C 0.045 3.955 20 C -0.266 4.266 21 C 0.124 3.876 22 O -0.230 6.230 23 C -0.069 4.069 24 C -0.201 4.201 25 C 0.003 3.997 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.152 0.848 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.149 -9.638 7.689 18.768 hybrid contribution -0.342 0.767 -0.112 0.847 sum -14.491 -8.871 7.578 18.604 Atomic orbital electron populations 1.22711 0.82010 1.02293 0.99662 1.87934 1.19212 1.28163 1.95323 1.23244 0.95673 0.84738 1.00583 1.21272 0.90651 1.01427 0.86789 1.57367 1.82293 1.23798 1.18244 1.19067 0.96938 0.90329 0.80158 1.21505 0.99167 1.29009 1.07108 0.92031 1.24917 0.97600 0.96282 0.95116 1.69921 1.35934 1.37483 1.10138 0.86534 0.84567 0.78303 0.78258 1.20393 1.21253 1.19790 1.01833 0.73807 0.72763 0.73244 1.93588 1.59998 1.84792 1.55642 1.93470 1.84090 1.81952 1.37474 1.31119 1.26010 1.20581 1.00816 1.20596 0.89812 0.86022 0.99106 1.21195 1.00776 1.10157 0.94492 1.19240 0.84911 0.90117 0.93324 1.86084 1.27699 1.73638 1.35554 1.23072 0.93059 0.99977 0.90772 1.20442 0.94528 1.06252 0.98893 1.20813 0.94481 0.89728 0.94652 0.90132 0.94461 0.94284 0.92788 0.92332 0.89408 0.87913 0.94318 0.94742 0.92724 0.83913 0.85378 0.92559 0.88280 0.92473 0.84848 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.29 101.05 1.04 1.36 16 2 O -0.39 -5.38 5.95 -35.23 -0.21 -5.59 16 3 C 0.04 0.50 6.28 37.16 0.23 0.73 16 4 C 0.13 2.10 6.07 -4.04 -0.02 2.07 16 5 N -0.98 -20.06 2.71 -115.66 -0.31 -20.37 16 6 C 0.26 6.26 5.10 -5.19 -0.03 6.24 16 7 C -0.53 -14.48 9.38 -34.44 -0.32 -14.81 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 11 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 S 2.69 55.48 5.52 -107.50 -0.59 54.89 16 16 O -0.95 -22.94 16.24 -57.17 -0.93 -23.87 16 17 O -0.98 -20.65 15.82 -57.17 -0.90 -21.56 16 18 C -0.70 -12.14 5.45 -39.56 -0.22 -12.36 16 19 C 0.06 0.95 5.98 -39.61 -0.24 0.72 16 20 C -0.25 -3.10 7.06 -39.43 -0.28 -3.38 16 21 C 0.17 2.28 6.69 -39.22 -0.26 2.01 16 22 O -0.32 -3.71 10.50 -19.42 -0.20 -3.92 16 23 C 0.03 0.19 9.81 101.05 0.99 1.18 16 24 C -0.18 -2.65 9.99 -39.44 -0.39 -3.05 16 25 C 0.02 0.37 9.51 -39.61 -0.38 0.00 16 26 H 0.08 0.77 5.79 -51.93 -0.30 0.47 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 32 H 0.10 1.67 8.11 -51.93 -0.42 1.25 16 33 H 0.04 1.01 7.61 -51.93 -0.40 0.61 16 34 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.14 2.07 6.74 -52.48 -0.35 1.72 16 37 H 0.13 1.21 6.07 -52.49 -0.32 0.89 16 38 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.15 2.44 7.61 -52.48 -0.40 2.04 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -33.50 355.00 -7.90 -41.40 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.84 Total: -0.29 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 0.03 Total: -17.61 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.42 Total: -45.35 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -2.25 Total: -54.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 55.48 SS G_CDS: -0.59 Total: 54.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.50 -7.90 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065624318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.894 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds