Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47390 * 89.99794 * 11 9 7 13 13 H 1.48503 * 109.47067 * 210.00006 * 11 9 7 14 14 H 1.48504 * 109.47093 * 329.99809 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38264 * 119.94135 * 269.72771 * 18 15 5 20 20 C 1.38144 * 120.05444 * 179.72715 * 19 18 15 21 21 C 1.38737 * 119.94273 * 0.56574 * 20 19 18 22 22 O 1.35897 * 120.05433 * 179.68345 * 21 20 19 23 23 C 1.42897 * 117.00363 * 0.02562 * 22 21 20 24 24 C 1.38727 * 119.88463 * 359.70868 * 21 20 19 25 25 C 1.38140 * 119.94797 * 359.97438 * 24 21 20 26 26 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 28 28 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 29 29 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 30 30 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 31 31 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 32 32 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 33 33 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 34 34 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 35 35 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 36 36 H 1.08010 * 119.97397 * 359.97438 * 19 18 15 37 37 H 1.07997 * 120.03160 * 180.24936 * 20 19 18 38 38 H 1.09004 * 109.46984 * 59.99586 * 23 22 21 39 39 H 1.08995 * 109.47460 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.47218 * 300.00237 * 23 22 21 41 41 H 1.08004 * 120.02755 * 179.97438 * 24 21 20 42 42 H 1.08006 * 119.97130 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 5.1844 3.0607 -4.4484 11 14 7.7111 3.5227 -3.4101 12 1 8.6538 2.5984 -4.0900 13 1 7.7086 4.8316 -4.1116 14 1 8.1382 3.7171 -2.0011 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8341 -2.2327 -0.8027 20 6 0.6398 -2.8271 -1.1614 21 6 0.3434 -3.0326 -2.5011 22 8 -0.8279 -3.6230 -2.8562 23 6 -1.7083 -4.0064 -1.7980 24 6 1.2452 -2.6350 -3.4774 25 6 2.4353 -2.0351 -3.1137 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1765 0.0889 33 1 4.0654 0.7728 -3.3378 34 1 3.4456 2.1934 -2.4627 35 1 5.4820 3.6362 -5.1704 36 1 2.0675 -2.0771 0.2403 37 1 -0.0604 -3.1361 -0.3995 38 1 -1.9877 -3.1251 -1.2205 39 1 -2.6035 -4.4648 -2.2181 40 1 -1.2049 -4.7221 -1.1479 41 1 1.0171 -2.7943 -4.5210 42 1 3.1374 -1.7250 -3.8736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065624318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -141.277469 kcal Electronic energy + Delta-G solvation = -27774.841287 eV Core-core repulsion = 23847.346938 eV Total energy + Delta-G solvation = -3927.494349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15344 -39.12439 -38.38677 -38.14411 -37.01881 -36.73403 -34.55506 -32.25037 -31.36348 -30.95517 -28.44738 -28.24385 -26.97132 -24.84728 -24.01955 -23.46163 -22.90057 -19.98964 -19.36862 -18.82461 -18.39104 -18.03179 -17.59653 -17.24439 -16.87443 -16.75161 -16.44653 -16.20224 -15.92939 -15.68178 -15.10936 -14.78656 -14.53213 -14.52405 -14.12672 -13.99848 -13.72658 -13.48188 -13.24133 -13.05839 -13.03841 -12.92885 -12.83293 -12.77174 -12.52091 -12.31015 -12.17045 -12.13611 -11.91313 -11.85907 -11.66196 -11.55853 -10.56611 -10.53103 -9.97466 -9.76300 -9.51025 -8.16921 -6.28525 -0.41208 -0.00337 0.33595 1.41201 1.44716 1.53306 2.12825 2.23812 2.43914 2.56689 2.87626 3.14167 3.16440 3.44822 3.78955 3.86097 4.13049 4.25037 4.26142 4.31599 4.34642 4.41567 4.47740 4.56444 4.61706 4.64007 4.68169 4.74385 4.89192 4.95040 4.98838 5.01428 5.06030 5.19529 5.22703 5.26173 5.51047 5.64037 5.73920 5.96432 6.13842 6.31642 6.32233 6.79941 7.40162 8.90509 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.004281 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.863004 B = 6538.903692 C = 6874.808685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.045 3.955 4 C 0.115 3.885 5 N -0.984 5.984 6 C 0.275 3.725 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.954 3.046 12 H -0.281 1.281 13 H -0.275 1.275 14 H -0.263 1.263 15 S 2.695 3.305 16 O -0.999 6.999 17 O -0.990 6.990 18 C -0.707 4.707 19 C 0.063 3.937 20 C -0.232 4.232 21 C 0.181 3.819 22 O -0.325 6.325 23 C 0.011 3.989 24 C -0.188 4.188 25 C 0.003 3.997 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.013 0.987 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.147 0.853 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.369 -9.820 9.530 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.033 4.033 4 C -0.010 4.010 5 N -0.821 5.821 6 C 0.151 3.849 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.779 3.221 12 H -0.207 1.207 13 H -0.200 1.200 14 H -0.188 1.188 15 S 2.790 3.210 16 O -0.990 6.990 17 O -0.981 6.981 18 C -0.798 4.798 19 C 0.044 3.956 20 C -0.251 4.251 21 C 0.134 3.866 22 O -0.238 6.238 23 C -0.082 4.082 24 C -0.207 4.207 25 C -0.017 4.017 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.167 0.833 37 H 0.187 0.813 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.165 0.835 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.562 -10.321 9.363 21.645 hybrid contribution 0.197 0.844 -0.592 1.049 sum -16.365 -9.477 8.771 20.846 Atomic orbital electron populations 1.22910 0.80244 1.03621 1.00433 1.87895 1.21107 1.27831 1.95478 1.23069 0.93469 0.85235 1.01553 1.21535 0.93075 1.01219 0.85178 1.57198 1.82983 1.23626 1.18339 1.18589 0.95494 0.89861 0.80922 1.21849 1.00466 1.29258 1.07044 0.92721 1.25711 1.01300 0.96739 0.94801 1.70014 1.37611 1.38101 1.10685 0.85614 0.79935 0.77794 0.78727 1.20697 1.19981 1.18769 1.01304 0.74592 0.72742 0.72335 1.93517 1.62992 1.85459 1.57026 1.93437 1.85001 1.82010 1.37641 1.30438 1.25000 1.22633 1.01756 1.20719 0.90186 0.85982 0.98719 1.21501 1.00138 1.08337 0.95142 1.19278 0.85228 0.88889 0.93217 1.86098 1.27128 1.72852 1.37705 1.23501 0.93086 1.01190 0.90470 1.20570 0.94021 1.05924 1.00230 1.20736 0.95496 0.91286 0.94156 0.88525 0.92268 0.94947 0.89360 0.93635 0.88754 0.87983 0.96879 0.95220 0.92456 0.83290 0.81314 0.90925 0.85959 0.91133 0.83540 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.29 113.37 1.17 1.61 16 2 O -0.40 -10.46 5.95 -148.98 -0.89 -11.34 16 3 C 0.04 1.20 6.28 71.98 0.45 1.65 16 4 C 0.12 3.88 6.07 86.38 0.52 4.40 16 5 N -0.98 -41.83 2.71 -519.85 -1.41 -43.24 16 6 C 0.27 14.06 5.10 85.63 0.44 14.50 16 7 C -0.55 -31.01 9.38 25.60 0.24 -30.77 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.01 0.79 5.46 84.66 0.46 1.25 16 10 N -0.92 -54.36 13.29 21.45 0.28 -54.08 16 11 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 15 S 2.70 115.61 5.52 -56.49 -0.31 115.30 16 16 O -1.00 -51.45 16.24 -128.00 -2.08 -53.53 16 17 O -0.99 -42.56 15.82 -128.00 -2.02 -44.59 16 18 C -0.71 -24.87 5.45 22.28 0.12 -24.75 16 19 C 0.06 1.78 5.98 22.25 0.13 1.92 16 20 C -0.23 -5.02 7.06 22.37 0.16 -4.87 16 21 C 0.18 4.35 6.69 22.51 0.15 4.50 16 22 O -0.33 -6.45 10.50 -92.39 -0.97 -7.42 16 23 C 0.01 0.11 9.81 113.37 1.11 1.22 16 24 C -0.19 -5.35 9.99 22.36 0.22 -5.13 16 25 C 0.00 0.10 9.51 22.25 0.21 0.31 16 26 H 0.10 1.44 5.79 -2.39 -0.01 1.43 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 31 H 0.09 3.02 6.91 -2.39 -0.02 3.00 16 32 H 0.10 3.37 8.11 -2.39 -0.02 3.35 16 33 H 0.01 0.74 7.61 -2.39 -0.02 0.72 16 34 H 0.03 1.53 8.05 -2.39 -0.02 1.51 16 35 H 0.27 14.76 8.31 -92.70 -0.77 13.98 16 36 H 0.15 4.01 6.74 -2.91 -0.02 3.99 16 37 H 0.17 2.24 6.07 -2.91 -0.02 2.23 16 38 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 41 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.13 4.70 7.61 -2.91 -0.02 4.68 16 Total: -1.00 -74.72 355.00 1.04 -73.67 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.02 Total: 12.59 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 5.39 Total: -34.14 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -1.13 Total: -97.32 kcal Atomic # 8 Polarization: -110.92 SS G_CDS: -5.96 Total: -116.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 115.61 SS G_CDS: -0.31 Total: 115.30 kcal Total: -74.72 1.04 -73.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065624318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.605 kcal (2) G-P(sol) polarization free energy of solvation -74.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds