Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00152 * 2 1 4 4 C 1.52996 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47193 * 65.00124 * 4 3 2 6 6 C 1.46506 * 119.99937 * 85.00102 * 5 4 3 7 7 C 1.50703 * 109.47289 * 84.99851 * 6 5 4 8 8 H 1.07994 * 119.99399 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00144 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99733 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46632 * 90.00476 * 11 9 7 13 13 H 1.48496 * 109.46690 * 210.00029 * 11 9 7 14 14 H 1.48498 * 109.47171 * 330.00226 * 11 9 7 15 15 S 1.65596 * 120.00234 * 264.99830 * 5 4 3 16 16 O 1.42102 * 106.39988 * 23.54158 * 15 5 4 17 17 O 1.42093 * 106.40335 * 156.45809 * 15 5 4 18 18 C 1.76205 * 107.21728 * 270.00185 * 15 5 4 19 19 C 1.38164 * 120.02901 * 115.00055 * 18 15 5 20 20 C 1.38244 * 120.05834 * 179.97438 * 19 18 15 21 21 C 1.38281 * 120.10872 * 0.02562 * 20 19 18 22 22 C 1.38124 * 120.05683 * 0.02562 * 21 20 19 23 23 C 1.38705 * 120.02540 * 294.72021 * 18 15 5 24 24 O 1.35898 * 120.05681 * 359.97438 * 23 18 15 25 25 C 1.42906 * 116.99672 * 179.97438 * 24 23 18 26 26 H 1.08993 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46365 * 300.00110 * 1 2 3 28 28 H 1.08999 * 109.47045 * 59.99595 * 1 2 3 29 29 H 1.08994 * 109.47015 * 60.00280 * 3 2 1 30 30 H 1.09000 * 109.47169 * 300.00418 * 3 2 1 31 31 H 1.08999 * 109.47667 * 305.00032 * 4 3 2 32 32 H 1.09003 * 109.47352 * 184.99760 * 4 3 2 33 33 H 1.09001 * 109.47060 * 205.00301 * 6 5 4 34 34 H 1.09004 * 109.47073 * 324.99790 * 6 5 4 35 35 H 0.96997 * 119.99752 * 179.97438 * 10 9 7 36 36 H 1.08004 * 119.96814 * 359.97101 * 19 18 15 37 37 H 1.08000 * 119.94361 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.97389 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.02836 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46554 * 180.02562 * 25 24 23 41 41 H 1.08996 * 109.47251 * 299.99924 * 25 24 23 42 42 H 1.08999 * 109.46998 * 60.00510 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1809 1.3890 -2.4462 7 6 5.5682 1.9770 -2.4181 8 1 6.2308 1.7579 -1.5939 9 6 5.9917 2.7936 -3.4450 10 7 5.1849 3.0600 -4.4488 11 14 7.7111 3.5230 -3.4098 12 1 8.6548 2.5986 -4.0881 13 1 7.7083 4.8311 -4.1127 14 1 8.1369 3.7191 -2.0007 15 16 4.2414 -1.0688 -1.3192 16 8 3.4686 -1.6438 -0.2745 17 8 4.1043 -1.4425 -2.6833 18 6 5.9302 -1.3401 -0.8962 19 6 6.2519 -2.0318 0.2558 20 6 7.5767 -2.2455 0.5880 21 6 8.5831 -1.7673 -0.2310 22 6 8.2667 -1.0743 -1.3832 23 6 6.9377 -0.8645 -1.7224 24 8 6.6238 -0.1893 -2.8592 25 6 7.7128 0.2719 -3.6615 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5681 0.8409 32 1 3.9786 2.1764 0.0889 33 1 4.0654 0.7728 -3.3379 34 1 3.4456 2.1935 -2.4627 35 1 5.4827 3.6348 -5.1711 36 1 5.4677 -2.4058 0.8973 37 1 7.8261 -2.7860 1.4891 38 1 9.6174 -1.9351 0.0309 39 1 9.0531 -0.7007 -2.0223 40 1 7.3241 0.7936 -4.5361 41 1 8.3313 0.9533 -3.0775 42 1 8.3133 -0.5792 -3.9827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069778643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = -106.168823 kcal Electronic energy + Delta-G solvation = -28591.424831 eV Core-core repulsion = 24665.452907 eV Total energy + Delta-G solvation = -3925.971924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.67594 -37.64457 -37.05236 -36.12305 -35.28438 -34.85759 -32.59817 -31.05582 -29.75326 -29.36874 -26.87081 -26.62641 -25.68364 -23.07503 -22.74589 -21.88258 -21.36349 -18.52785 -17.67890 -16.87343 -16.65115 -16.21599 -16.11140 -15.75347 -15.36034 -15.27256 -14.81643 -14.53041 -14.34185 -14.27321 -14.02144 -13.37846 -13.24732 -12.68489 -12.62633 -12.33855 -12.06527 -11.84736 -11.58283 -11.38212 -11.37112 -11.16752 -11.11798 -11.04811 -10.98265 -10.92227 -10.60046 -10.44611 -10.19596 -10.10793 -9.86686 -9.68810 -9.21876 -9.04842 -8.47704 -7.97302 -7.85863 -6.09138 -4.05771 1.15246 1.46268 1.74147 3.06760 3.23991 3.25459 3.70240 3.82995 3.99313 4.26177 4.31128 4.66993 4.97951 5.04488 5.24704 5.33498 5.36174 5.47988 5.52846 5.58639 5.62472 5.66704 5.75248 5.76853 5.79734 5.88641 5.94262 6.01332 6.04140 6.26340 6.34186 6.39439 6.47866 6.61404 6.67211 7.03035 7.41233 7.51616 7.61667 7.77670 7.83634 7.89886 8.21737 8.90152 9.48818 10.99328 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.007533 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.880929 B = 3715.856581 C = 5469.530486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.038 3.962 4 C 0.137 3.863 5 N -0.977 5.977 6 C 0.247 3.753 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.889 5.889 11 Si 0.871 3.129 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.274 1.274 15 S 2.700 3.300 16 O -0.961 6.961 17 O -0.956 6.956 18 C -0.718 4.718 19 C 0.010 3.990 20 C -0.199 4.199 21 C -0.034 4.034 22 C -0.243 4.243 23 C 0.240 3.760 24 O -0.246 6.246 25 C 0.036 3.964 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -5.076 8.297 9.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.040 4.040 4 C 0.010 3.990 5 N -0.816 5.816 6 C 0.125 3.875 7 C -0.538 4.538 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.528 5.528 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.200 1.200 15 S 2.788 3.212 16 O -0.951 6.951 17 O -0.947 6.947 18 C -0.803 4.803 19 C -0.009 4.009 20 C -0.218 4.218 21 C -0.052 4.052 22 C -0.262 4.262 23 C 0.189 3.811 24 O -0.154 6.154 25 C -0.059 4.059 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.021 -5.689 7.780 9.692 hybrid contribution 2.028 1.175 0.135 2.348 sum 3.050 -4.514 7.915 9.608 Atomic orbital electron populations 1.22691 0.82491 1.02231 0.99232 1.88151 1.18333 1.26995 1.95193 1.23123 0.95463 0.85330 1.00130 1.21083 0.91290 1.00432 0.86229 1.57340 1.80241 1.25929 1.18061 1.19207 0.96390 0.90661 0.81235 1.21476 0.99090 1.27222 1.06013 0.92373 1.24857 0.96781 0.96755 0.95679 1.69921 1.35365 1.37433 1.10126 0.87184 0.85665 0.78897 0.78337 1.20119 1.21472 1.19951 1.01719 0.73076 0.72934 0.73453 1.93537 1.66827 1.76450 1.58331 1.93536 1.85623 1.81533 1.33981 1.30557 1.25749 1.17873 1.06087 1.20766 0.97286 0.90666 0.92169 1.20990 0.92856 1.06257 1.01723 1.21095 0.99089 0.92542 0.92482 1.21335 0.95506 1.08031 1.01361 1.18634 0.92010 0.84653 0.85769 1.86792 1.33970 1.64451 1.30222 1.23261 0.89287 0.97910 0.95426 0.90084 0.94763 0.94520 0.93183 0.92618 0.90782 0.88680 0.92537 0.94653 0.92766 0.84086 0.85822 0.85960 0.85249 0.87330 0.93074 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.67 8.76 -54.45 -0.48 -7.15 16 3 C 0.04 0.62 6.28 37.16 0.23 0.86 16 4 C 0.14 2.41 5.82 -4.04 -0.02 2.39 16 5 N -0.98 -20.74 2.71 -115.65 -0.31 -21.05 16 6 C 0.25 6.00 4.98 -5.19 -0.03 5.97 16 7 C -0.50 -12.31 5.76 -34.44 -0.20 -12.51 16 8 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 9 C 0.06 1.53 4.34 -17.82 -0.08 1.45 16 10 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 11 Si 0.87 19.18 26.08 -169.99 -4.43 14.75 16 12 H -0.27 -5.54 5.95 56.52 0.34 -5.21 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 S 2.70 58.57 5.20 -107.50 -0.56 58.02 16 16 O -0.96 -20.68 14.12 -65.29 -0.92 -21.60 16 17 O -0.96 -23.88 15.84 -62.58 -0.99 -24.87 16 18 C -0.72 -14.17 5.92 -39.44 -0.23 -14.40 16 19 C 0.01 0.17 9.55 -39.61 -0.38 -0.21 16 20 C -0.20 -2.84 10.04 -39.56 -0.40 -3.24 16 21 C -0.03 -0.48 10.04 -39.61 -0.40 -0.88 16 22 C -0.24 -4.04 9.04 -39.43 -0.36 -4.40 16 23 C 0.24 4.79 6.16 -39.22 -0.24 4.55 16 24 O -0.25 -5.37 5.36 -29.48 -0.16 -5.53 16 25 C 0.04 0.68 6.93 101.05 0.70 1.38 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.07 1.21 7.61 -51.93 -0.40 0.82 16 32 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 33 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 34 H 0.04 0.88 8.05 -51.93 -0.42 0.47 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.14 2.12 7.33 -52.48 -0.38 1.73 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.13 1.89 6.30 -52.48 -0.33 1.56 16 40 H 0.11 2.18 6.85 -51.93 -0.36 1.82 16 41 H 0.05 0.93 5.10 -51.93 -0.27 0.67 16 42 H 0.04 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -31.60 343.47 -8.08 -39.68 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.85 Total: 3.32 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.28 Total: -17.50 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.42 Total: -44.29 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -2.55 Total: -59.15 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.43 Total: 14.75 kcal Atomic # 16 Polarization: 58.57 SS G_CDS: -0.56 Total: 58.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.60 -8.08 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069778643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.490 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds