Wall clock time and date at job start Tue Mar 31 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99855 * 2 1 4 4 H 1.48495 * 109.46856 * 269.99714 * 3 2 1 5 5 H 1.48500 * 109.47085 * 29.99489 * 3 2 1 6 6 H 1.48500 * 109.47372 * 149.99832 * 3 2 1 7 7 C 1.37880 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47107 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99825 * 169.99856 * 11 10 9 13 13 C 1.53237 * 109.33763 * 187.25538 * 12 11 10 14 14 N 1.47086 * 108.52232 * 306.16759 * 13 12 11 15 15 S 1.65596 * 120.88184 * 230.91568 * 14 13 12 16 16 O 1.42104 * 104.27431 * 206.07238 * 15 14 13 17 17 O 1.42103 * 104.27761 * 333.92658 * 15 14 13 18 18 C 1.81403 * 104.45147 * 90.00063 * 15 14 13 19 19 C 1.50693 * 109.47176 * 179.97438 * 18 15 14 20 20 C 1.41380 * 126.80417 * 269.71167 * 19 18 15 21 21 C 1.35451 * 103.98384 * 179.88738 * 20 19 18 22 22 O 1.34035 * 106.45205 * 0.36683 * 21 20 19 23 23 N 1.20927 * 111.56199 * 359.75107 * 22 21 20 24 24 C 1.47082 * 118.23312 * 51.18562 * 14 13 12 25 25 C 1.46897 * 110.99958 * 294.29891 * 11 10 9 26 26 H 0.96991 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47300 * 59.99831 * 9 7 2 28 28 H 1.08999 * 109.46834 * 299.99819 * 9 7 2 29 29 H 1.09004 * 109.47076 * 59.99589 * 10 9 7 30 30 H 1.08999 * 109.47181 * 299.99675 * 10 9 7 31 31 H 1.09001 * 109.49044 * 67.29688 * 12 11 10 32 32 H 1.08994 * 109.49187 * 307.21283 * 12 11 10 33 33 H 1.09004 * 109.62487 * 186.46212 * 13 12 11 34 34 H 1.08996 * 109.63378 * 65.87874 * 13 12 11 35 35 H 1.08997 * 109.47052 * 300.00211 * 18 15 14 36 36 H 1.08997 * 109.47157 * 59.99629 * 18 15 14 37 37 H 1.08001 * 128.00817 * 0.02562 * 20 19 18 38 38 H 1.08008 * 126.77454 * 180.13839 * 21 20 19 39 39 H 1.09002 * 109.62515 * 68.53060 * 24 14 13 40 40 H 1.09000 * 109.62815 * 189.10459 * 24 14 13 41 41 H 1.08993 * 109.49479 * 292.70262 * 25 11 10 42 42 H 1.09001 * 109.49515 * 52.79317 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4173 -6.0655 -0.2370 13 6 1.5950 -7.3471 -0.4092 14 7 0.7096 -7.4942 0.7561 15 16 0.6555 -8.9128 1.6086 16 8 -0.6417 -8.9237 2.1887 17 8 1.0452 -9.9029 0.6667 18 6 1.9244 -8.7192 2.8905 19 6 1.9712 -9.9613 3.7425 20 6 1.2300 -10.2086 4.9208 21 6 1.6231 -11.4479 5.3007 22 8 2.5268 -11.8530 4.3975 23 7 2.7064 -11.0168 3.5426 24 6 -0.1308 -6.3499 1.1402 25 6 0.7594 -5.1076 1.2514 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6043 0.8905 30 1 2.8720 -3.6044 -0.8895 31 1 3.0909 -6.1770 0.6127 32 1 2.9983 -5.8820 -1.1407 33 1 2.2638 -8.2056 -0.4716 34 1 0.9964 -7.2789 -1.3175 35 1 2.8953 -8.5640 2.4202 36 1 1.6817 -7.8595 3.5151 37 1 0.5141 -9.5606 5.4045 38 1 1.2793 -11.9992 6.1635 39 1 -0.8953 -6.1859 0.3807 40 1 -0.6032 -6.5492 2.1021 41 1 1.4561 -5.2325 2.0802 42 1 0.1380 -4.2295 1.4270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075918364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:22 Heat of formation + Delta-G solvation = 6.490068 kcal Electronic energy + Delta-G solvation = -26217.099927 eV Core-core repulsion = 22328.306011 eV Total energy + Delta-G solvation = -3888.793917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -45.48364 -38.84356 -37.40898 -36.20079 -35.43853 -35.01054 -32.88772 -32.27583 -31.15145 -29.78849 -29.64960 -26.39528 -23.91661 -23.70315 -23.62438 -22.06906 -20.86635 -20.12433 -18.98769 -18.38105 -18.27297 -17.73989 -16.62709 -16.47883 -16.32419 -15.55509 -14.97721 -14.74929 -14.65535 -14.62759 -14.20699 -14.11112 -13.94523 -13.81238 -13.20727 -12.91274 -12.60660 -12.38584 -12.32453 -12.14160 -12.06235 -11.85432 -11.83895 -11.51312 -11.26220 -11.12252 -10.94265 -10.73675 -10.61260 -10.39245 -10.12477 -9.94248 -9.52841 -9.18513 -9.09856 -8.38367 -7.85352 -6.04901 -4.07555 -0.18295 1.03294 1.70497 2.33338 2.76499 3.28459 3.29357 3.35067 3.37448 3.60101 3.73305 4.07192 4.22180 4.44205 4.48673 4.58037 4.60387 4.71721 5.03028 5.07266 5.13279 5.20484 5.29033 5.31295 5.33901 5.46321 5.48207 5.71536 5.86117 5.97720 6.05234 6.11293 6.21365 6.35092 6.48976 6.86886 7.36694 7.43930 7.70833 7.71261 7.81582 8.01121 8.36917 8.99498 9.56495 11.06331 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002495 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.463237 B =11221.819974 C =11526.473663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.063 3.937 11 N -0.535 5.535 12 C 0.038 3.962 13 C 0.125 3.875 14 N -0.995 5.995 15 S 2.615 3.385 16 O -0.943 6.943 17 O -0.943 6.943 18 C -0.557 4.557 19 C 0.009 3.991 20 C -0.223 4.223 21 C -0.053 4.053 22 O 0.114 5.886 23 N -0.344 5.344 24 C 0.124 3.876 25 C 0.038 3.962 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.225 0.775 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 -21.695 9.931 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.260 5.260 12 C -0.092 4.092 13 C 0.000 4.000 14 N -0.834 5.834 15 S 2.704 3.296 16 O -0.933 6.933 17 O -0.933 6.933 18 C -0.682 4.682 19 C -0.150 4.150 20 C -0.245 4.245 21 C -0.134 4.134 22 O 0.042 5.958 23 N -0.045 5.045 24 C -0.001 4.001 25 C -0.091 4.091 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.199 0.801 38 H 0.241 0.759 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.048 0.952 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.215 -22.607 8.436 24.231 hybrid contribution 1.067 1.938 1.641 2.754 sum 3.281 -20.669 10.077 23.228 Atomic orbital electron populations 1.69960 1.06001 1.26666 1.50488 1.24989 0.94835 0.99189 0.95251 0.86599 0.79772 0.83486 0.78147 1.20618 1.21216 1.19982 1.21170 0.92955 0.91040 1.51082 0.92843 1.19106 0.93954 0.90062 0.97840 1.22361 0.96773 0.88095 0.99093 1.61962 1.27447 1.02424 1.34164 1.22485 0.94161 0.91369 1.01152 1.21619 0.92480 0.97655 0.88237 1.57809 1.53676 1.31227 1.40723 1.05157 0.75688 0.73568 0.75156 1.93600 1.34231 1.85798 1.79696 1.93609 1.84451 1.57075 1.58126 1.29285 1.22289 1.00179 1.16494 1.22422 0.99078 0.95347 0.98163 1.22889 1.05343 0.98626 0.97620 1.26148 0.93595 0.96422 0.97280 1.84872 1.46815 1.36844 1.27228 1.73958 1.19975 1.00067 1.10474 1.21689 0.92829 0.84046 1.01512 1.22549 0.97346 0.98530 0.90716 0.92936 0.95599 0.96453 0.96197 0.91858 0.95200 0.89578 0.89364 0.89689 0.83387 0.82893 0.80070 0.75875 0.89568 0.89199 0.95215 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.68 4.90 -27.88 -0.14 0.54 16 10 C 0.06 1.23 4.90 -3.83 -0.02 1.22 16 11 N -0.54 -8.72 4.63 -234.32 -1.08 -9.80 16 12 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 13 C 0.13 1.46 6.46 -3.60 -0.02 1.43 16 14 N -0.99 -11.82 3.26 -113.23 -0.37 -12.19 16 15 S 2.61 31.37 5.40 -107.50 -0.58 30.79 16 16 O -0.94 -13.21 16.78 -57.54 -0.97 -14.17 16 17 O -0.94 -14.03 16.79 -57.54 -0.97 -14.99 16 18 C -0.56 -5.19 6.77 36.00 0.24 -4.94 16 19 C 0.01 0.10 6.59 -82.10 -0.54 -0.44 16 20 C -0.22 -1.75 11.12 -39.38 -0.44 -2.19 16 21 C -0.05 -0.32 12.30 29.74 0.37 0.04 16 22 O 0.11 1.06 11.20 17.19 0.19 1.26 16 23 N -0.34 -4.09 12.07 33.42 0.40 -3.69 16 24 C 0.12 1.54 6.46 -3.60 -0.02 1.52 16 25 C 0.04 0.56 5.46 -3.70 -0.02 0.54 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.44 6.40 -51.93 -0.33 0.11 16 29 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 30 H 0.06 1.22 7.97 -51.93 -0.41 0.81 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 1.04 7.99 -51.93 -0.41 0.62 16 33 H 0.09 0.88 7.20 -51.93 -0.37 0.51 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.15 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.22 0.20 8.06 -52.48 -0.42 -0.22 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 0.94 7.19 -51.93 -0.37 0.57 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 1.68 6.16 -51.93 -0.32 1.36 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -35.69 359.63 -9.26 -44.95 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.00 Total: -3.45 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.02 Total: -14.89 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.31 Total: -51.05 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.74 Total: -27.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 31.37 SS G_CDS: -0.58 Total: 30.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.69 -9.26 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075918364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.441 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds