Wall clock time and date at job start Tue Mar 31 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99855 * 2 1 4 4 H 1.48495 * 109.46856 * 269.99714 * 3 2 1 5 5 H 1.48500 * 109.47085 * 29.99489 * 3 2 1 6 6 H 1.48500 * 109.47372 * 149.99832 * 3 2 1 7 7 C 1.37880 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47107 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99825 * 169.99856 * 11 10 9 13 13 C 1.53237 * 109.33763 * 187.25538 * 12 11 10 14 14 N 1.47086 * 108.52232 * 306.16759 * 13 12 11 15 15 S 1.65596 * 120.88184 * 230.91568 * 14 13 12 16 16 O 1.42104 * 104.27431 * 206.07238 * 15 14 13 17 17 O 1.42103 * 104.27761 * 333.92658 * 15 14 13 18 18 C 1.81403 * 104.45147 * 90.00063 * 15 14 13 19 19 C 1.50693 * 109.47176 * 179.97438 * 18 15 14 20 20 C 1.41380 * 126.80417 * 269.71167 * 19 18 15 21 21 C 1.35451 * 103.98384 * 179.88738 * 20 19 18 22 22 O 1.34035 * 106.45205 * 0.36683 * 21 20 19 23 23 N 1.20927 * 111.56199 * 359.75107 * 22 21 20 24 24 C 1.47082 * 118.23312 * 51.18562 * 14 13 12 25 25 C 1.46897 * 110.99958 * 294.29891 * 11 10 9 26 26 H 0.96991 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47300 * 59.99831 * 9 7 2 28 28 H 1.08999 * 109.46834 * 299.99819 * 9 7 2 29 29 H 1.09004 * 109.47076 * 59.99589 * 10 9 7 30 30 H 1.08999 * 109.47181 * 299.99675 * 10 9 7 31 31 H 1.09001 * 109.49044 * 67.29688 * 12 11 10 32 32 H 1.08994 * 109.49187 * 307.21283 * 12 11 10 33 33 H 1.09004 * 109.62487 * 186.46212 * 13 12 11 34 34 H 1.08996 * 109.63378 * 65.87874 * 13 12 11 35 35 H 1.08997 * 109.47052 * 300.00211 * 18 15 14 36 36 H 1.08997 * 109.47157 * 59.99629 * 18 15 14 37 37 H 1.08001 * 128.00817 * 0.02562 * 20 19 18 38 38 H 1.08008 * 126.77454 * 180.13839 * 21 20 19 39 39 H 1.09002 * 109.62515 * 68.53060 * 24 14 13 40 40 H 1.09000 * 109.62815 * 189.10459 * 24 14 13 41 41 H 1.08993 * 109.49479 * 292.70262 * 25 11 10 42 42 H 1.09001 * 109.49515 * 52.79317 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4173 -6.0655 -0.2370 13 6 1.5950 -7.3471 -0.4092 14 7 0.7096 -7.4942 0.7561 15 16 0.6555 -8.9128 1.6086 16 8 -0.6417 -8.9237 2.1887 17 8 1.0452 -9.9029 0.6667 18 6 1.9244 -8.7192 2.8905 19 6 1.9712 -9.9613 3.7425 20 6 1.2300 -10.2086 4.9208 21 6 1.6231 -11.4479 5.3007 22 8 2.5268 -11.8530 4.3975 23 7 2.7064 -11.0168 3.5426 24 6 -0.1308 -6.3499 1.1402 25 6 0.7594 -5.1076 1.2514 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6043 0.8905 30 1 2.8720 -3.6044 -0.8895 31 1 3.0909 -6.1770 0.6127 32 1 2.9983 -5.8820 -1.1407 33 1 2.2638 -8.2056 -0.4716 34 1 0.9964 -7.2789 -1.3175 35 1 2.8953 -8.5640 2.4202 36 1 1.6817 -7.8595 3.5151 37 1 0.5141 -9.5606 5.4045 38 1 1.2793 -11.9992 6.1635 39 1 -0.8953 -6.1859 0.3807 40 1 -0.6032 -6.5492 2.1021 41 1 1.4561 -5.2325 2.0802 42 1 0.1380 -4.2295 1.4270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075918364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:21 Heat of formation + Delta-G solvation = -21.010978 kcal Electronic energy + Delta-G solvation = -26218.292462 eV Core-core repulsion = 22328.306011 eV Total energy + Delta-G solvation = -3889.986452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -46.14569 -39.99329 -38.43532 -37.23066 -36.40549 -36.09074 -34.78281 -32.86986 -32.23266 -31.48058 -30.40247 -27.87061 -25.54341 -24.78665 -24.34031 -22.79536 -22.24624 -21.40763 -19.96370 -19.14367 -19.02030 -18.67524 -18.38402 -17.49176 -17.33509 -16.55951 -16.24236 -16.17837 -15.90882 -15.67978 -15.43433 -15.23878 -14.76655 -14.46810 -14.32037 -14.14203 -13.80578 -13.60938 -13.58705 -13.37355 -13.17235 -12.97158 -12.90782 -12.80569 -12.54978 -12.51566 -12.36254 -12.24375 -11.86297 -11.77309 -11.30614 -11.22340 -11.06988 -10.73596 -10.50751 -10.15158 -9.11780 -8.17859 -6.28207 -1.10127 0.47618 1.07952 1.41126 1.41951 1.42647 1.53236 2.26102 2.41559 2.56665 2.80669 2.92935 3.05207 3.16037 3.34872 3.55367 3.91229 3.94018 4.04117 4.17287 4.20463 4.24667 4.30913 4.42139 4.48437 4.59672 4.66843 4.69452 4.75292 4.85240 4.97068 4.99219 5.01537 5.10461 5.15276 5.43507 5.49999 5.71582 5.82081 6.13288 6.32185 6.36239 6.89694 7.10788 7.40739 8.93915 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002495 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.463237 B =11221.819974 C =11526.473663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.035 3.965 10 C 0.081 3.919 11 N -0.551 5.551 12 C 0.039 3.961 13 C 0.125 3.875 14 N -0.995 5.995 15 S 2.624 3.376 16 O -0.968 6.968 17 O -0.977 6.977 18 C -0.540 4.540 19 C -0.018 4.018 20 C -0.241 4.241 21 C -0.033 4.033 22 O 0.106 5.894 23 N -0.383 5.383 24 C 0.130 3.870 25 C 0.039 3.961 26 H 0.263 0.737 27 H -0.009 1.009 28 H 0.000 1.000 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.204 0.796 38 H 0.274 0.726 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 -22.335 11.606 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.046 4.046 11 N -0.276 5.276 12 C -0.090 4.090 13 C 0.000 4.000 14 N -0.834 5.834 15 S 2.717 3.283 16 O -0.958 6.958 17 O -0.967 6.967 18 C -0.669 4.669 19 C -0.176 4.176 20 C -0.263 4.263 21 C -0.113 4.113 22 O 0.035 5.965 23 N -0.086 5.086 24 C 0.004 3.996 25 C -0.091 4.091 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.018 0.982 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.221 0.779 38 H 0.290 0.710 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.511 -23.270 10.076 25.600 hybrid contribution 0.635 2.042 1.204 2.454 sum 4.146 -21.229 11.280 24.394 Atomic orbital electron populations 1.70095 1.07703 1.27672 1.51564 1.25910 0.95699 1.03134 0.94834 0.85494 0.78689 0.78735 0.78381 1.20004 1.20888 1.18766 1.21633 0.93487 0.92364 1.50600 0.92271 1.18939 0.94270 0.91771 0.95276 1.21957 0.95299 0.88086 0.99274 1.61834 1.28154 1.02238 1.35407 1.22571 0.94007 0.90209 1.02242 1.21665 0.92571 0.97756 0.87994 1.57704 1.53809 1.30715 1.41159 1.04697 0.75643 0.72798 0.75119 1.93561 1.36318 1.85983 1.79978 1.93563 1.84932 1.58274 1.59954 1.29099 1.21184 1.01131 1.15524 1.22814 0.99865 0.95483 0.99429 1.23316 1.05955 0.99894 0.97141 1.27108 0.91242 0.95986 0.96976 1.84818 1.47577 1.36542 1.27538 1.73955 1.21653 1.00944 1.12004 1.21608 0.92213 0.83359 1.02372 1.22521 0.97464 0.98421 0.90656 0.92839 0.99046 0.98184 0.95844 0.91714 0.93498 0.88753 0.87437 0.90274 0.82150 0.80103 0.77914 0.71002 0.90675 0.87082 0.93415 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.77 4.90 29.85 0.15 1.91 16 10 C 0.08 3.16 4.90 86.30 0.42 3.58 16 11 N -0.55 -17.73 4.63 -895.27 -4.14 -21.87 16 12 C 0.04 0.94 5.62 86.38 0.49 1.42 16 13 C 0.13 2.75 6.46 86.35 0.56 3.31 16 14 N -1.00 -22.47 3.26 -512.14 -1.67 -24.14 16 15 S 2.62 60.01 5.40 -56.49 -0.31 59.70 16 16 O -0.97 -26.24 16.78 -127.65 -2.14 -28.38 16 17 O -0.98 -28.67 16.79 -127.65 -2.14 -30.81 16 18 C -0.54 -8.90 6.77 71.23 0.48 -8.42 16 19 C -0.02 -0.34 6.59 43.58 0.29 -0.06 16 20 C -0.24 -3.17 11.12 22.40 0.25 -2.92 16 21 C -0.03 -0.30 12.30 67.18 0.83 0.53 16 22 O 0.11 1.81 11.20 71.67 0.80 2.61 16 23 N -0.38 -8.70 12.07 -49.54 -0.60 -9.29 16 24 C 0.13 3.13 6.46 86.35 0.56 3.69 16 25 C 0.04 1.12 5.46 86.38 0.47 1.59 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.00 -0.01 6.40 -2.39 -0.02 -0.02 16 29 H 0.02 0.89 8.12 -2.38 -0.02 0.87 16 30 H 0.06 2.47 7.97 -2.39 -0.02 2.45 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 2.11 7.99 -2.39 -0.02 2.09 16 33 H 0.11 1.97 7.20 -2.38 -0.02 1.96 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.18 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.27 -0.76 8.06 -2.91 -0.02 -0.79 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 2.20 7.19 -2.39 -0.02 2.18 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 2.57 6.16 -2.39 -0.01 2.56 16 Total: -1.00 -79.18 359.63 -1.69 -80.86 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.02 Total: 5.71 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 5.18 Total: -24.45 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -6.13 Total: -110.62 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -3.48 Total: -56.59 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 60.01 SS G_CDS: -0.31 Total: 59.70 kcal Total: -79.18 -1.69 -80.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075918364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.854 kcal (2) G-P(sol) polarization free energy of solvation -79.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds