Wall clock time and date at job start Tue Mar 31 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46869 * 2 1 4 4 N 1.46502 * 109.46802 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00230 * 275.59989 * 4 3 2 6 6 H 1.07999 * 120.00036 * 146.59270 * 5 4 3 7 7 C 1.38806 * 119.99717 * 326.60290 * 5 4 3 8 8 N 1.31623 * 119.99941 * 336.09916 * 7 5 4 9 9 Si 1.86800 * 120.00082 * 156.10992 * 7 5 4 10 10 H 1.48495 * 109.47391 * 89.99605 * 9 7 5 11 11 H 1.48504 * 109.47008 * 209.99675 * 9 7 5 12 12 H 1.48498 * 109.46798 * 329.99227 * 9 7 5 13 13 S 1.65602 * 120.00000 * 95.59977 * 4 3 2 14 14 O 1.42102 * 106.40199 * 156.45811 * 13 4 3 15 15 O 1.42108 * 106.40184 * 23.54072 * 13 4 3 16 16 C 1.76204 * 107.21884 * 270.00165 * 13 4 3 17 17 C 1.39872 * 126.03689 * 269.99546 * 16 13 4 18 18 N 1.30838 * 108.20122 * 179.73973 * 17 16 13 19 19 N 1.40087 * 108.20174 * 0.41075 * 18 17 16 20 20 C 1.46505 * 126.03439 * 179.85552 * 19 18 17 21 21 H 1.08994 * 110.99023 * 28.88252 * 20 19 18 22 22 C 1.55309 * 111.12161 * 264.68520 * 20 19 18 23 23 C 1.54389 * 102.25215 * 207.95138 * 22 20 19 24 24 O 1.43234 * 107.58673 * 21.35275 * 23 22 20 25 25 C 1.43644 * 109.97359 * 1.71740 * 24 23 22 26 26 C 1.34951 * 107.92985 * 359.58584 * 19 18 17 27 27 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47478 * 300.00274 * 1 2 3 29 29 H 1.09005 * 109.46901 * 60.00407 * 1 2 3 30 30 H 1.09004 * 109.47285 * 239.99478 * 2 1 3 31 31 H 1.09005 * 109.46901 * 119.99592 * 2 1 3 32 32 H 1.08992 * 109.47294 * 59.99614 * 3 2 1 33 33 H 1.09005 * 109.47026 * 299.99516 * 3 2 1 34 34 H 0.97007 * 119.99876 * 180.02562 * 8 7 5 35 35 H 1.07999 * 125.90085 * 0.02562 * 17 16 13 36 36 H 1.08996 * 110.84578 * 89.75953 * 22 20 19 37 37 H 1.09003 * 111.02122 * 326.21657 * 22 20 19 38 38 H 1.09004 * 109.82661 * 261.84412 * 23 22 20 39 39 H 1.08997 * 109.90691 * 140.91492 * 23 22 20 40 40 H 1.08997 * 110.31257 * 94.48427 * 25 24 23 41 41 H 1.08998 * 110.30919 * 216.65224 * 25 24 23 42 42 H 1.07996 * 126.13181 * 180.26283 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3269 1.1812 6 1 5.1354 0.8069 1.2082 7 6 3.6666 1.8780 2.3430 8 7 2.8112 2.8758 2.2712 9 14 4.1775 1.2038 4.0085 10 1 5.3736 1.9378 4.4940 11 1 3.0639 1.3774 4.9755 12 1 4.5009 -0.2398 3.8800 13 16 4.3336 1.5822 -1.4264 14 8 5.6164 2.0971 -1.0967 15 8 3.4523 2.2188 -2.3415 16 6 4.5946 -0.0488 -2.0398 17 6 5.6958 -0.8657 -1.7631 18 7 5.5306 -2.0012 -2.3918 19 7 4.3218 -1.9391 -3.0970 20 6 3.7583 -2.9994 -3.9364 21 1 4.0727 -3.9827 -3.5868 22 6 4.1325 -2.7899 -5.4291 23 6 2.9520 -3.4642 -6.1606 24 8 1.8502 -3.5173 -5.2469 25 6 2.2137 -2.8970 -4.0034 26 6 3.7652 -0.7324 -2.8619 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 2.4463 3.2612 3.0832 35 1 6.5351 -0.6059 -1.1350 36 1 5.0721 -3.2885 -5.6670 37 1 4.1855 -1.7290 -5.6738 38 1 3.2317 -4.4738 -6.4617 39 1 2.6766 -2.8796 -7.0384 40 1 1.9031 -1.8522 -3.9967 41 1 1.7625 -3.4318 -3.1677 42 1 2.8259 -0.3762 -3.2585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:24 Heat of formation + Delta-G solvation = -30.599595 kcal Electronic energy + Delta-G solvation = -27440.945201 eV Core-core repulsion = 23550.542956 eV Total energy + Delta-G solvation = -3890.402245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.37802 -39.51675 -36.21969 -35.94724 -34.62050 -33.99428 -32.58761 -30.95035 -30.82782 -30.14209 -28.68555 -25.84749 -23.83427 -23.62275 -22.65011 -21.50025 -20.62592 -20.41851 -18.70828 -18.03039 -17.09357 -16.90346 -16.28401 -15.98249 -15.44641 -15.02511 -14.83006 -14.57146 -14.44961 -14.18325 -13.97853 -13.92106 -13.40412 -12.92291 -12.85079 -12.69852 -12.12486 -12.00419 -11.82840 -11.68328 -11.56636 -11.45906 -11.23165 -11.08231 -10.90786 -10.83929 -10.74162 -10.58357 -10.39085 -10.17928 -10.03836 -10.00184 -9.73055 -9.45303 -9.09418 -8.87441 -7.65689 -6.20282 -3.88260 1.53222 1.71962 2.22784 2.60610 3.23903 3.31562 3.35138 3.35711 3.91236 4.06139 4.21966 4.38114 4.43571 4.55271 4.60502 4.73216 4.82095 4.90149 5.12715 5.15338 5.23619 5.29785 5.37006 5.39630 5.51813 5.66128 5.70031 5.76705 5.93398 6.10818 6.33478 6.37943 6.42311 6.58251 6.60493 6.69243 6.83866 6.91546 7.34548 7.47586 7.56455 7.84912 8.48870 9.07447 9.44575 10.81939 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.004298 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.421471 B = 6513.212413 C = 6944.314625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.113 3.887 4 N -0.842 5.842 5 C -0.289 4.289 6 H 0.091 0.909 7 C 0.040 3.960 8 N -0.860 5.860 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 S 2.670 3.330 14 O -0.971 6.971 15 O -1.002 7.002 16 C -0.782 4.782 17 C 0.139 3.861 18 N -0.299 5.299 19 N -0.362 5.362 20 C 0.124 3.876 21 H 0.123 0.877 22 C -0.169 4.169 23 C 0.052 3.948 24 O -0.371 6.371 25 C 0.043 3.957 26 C 0.162 3.838 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.198 0.802 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -11.864 -10.960 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.014 4.014 4 N -0.674 5.674 5 C -0.423 4.423 6 H 0.108 0.892 7 C -0.166 4.166 8 N -0.500 5.500 9 Si 0.736 3.264 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 S 2.763 3.237 14 O -0.961 6.961 15 O -0.991 6.991 16 C -0.877 4.877 17 C -0.050 4.050 18 N -0.117 5.117 19 N -0.141 5.141 20 C 0.021 3.979 21 H 0.141 0.859 22 C -0.208 4.208 23 C -0.025 4.025 24 O -0.290 6.290 25 C -0.035 4.035 26 C 0.012 3.988 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.214 0.786 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.017 -12.415 -11.783 17.235 hybrid contribution 0.091 -0.182 1.040 1.059 sum -1.927 -12.597 -10.743 16.668 Atomic orbital electron populations 1.21700 0.96720 1.00371 1.01677 1.21950 0.94482 1.00001 1.01194 1.21451 0.80556 0.94486 1.04891 1.52556 1.11533 1.85636 1.17631 1.19003 1.06620 1.32572 0.84116 0.89161 1.25228 0.97755 0.94242 0.99398 1.69975 1.31151 1.19987 1.28868 0.86219 0.78261 0.79632 0.82248 1.20329 1.20938 1.19575 1.03297 0.73747 0.72725 0.73891 1.93435 1.42480 1.76425 1.83737 1.93406 1.66528 1.72975 1.66232 1.32292 1.05510 1.29590 1.20294 1.23561 0.97010 0.88978 0.95446 1.77365 0.99281 1.22416 1.12669 1.48830 1.16789 1.11569 1.36932 1.22988 0.93932 0.91243 0.89746 0.85907 1.23596 1.00398 1.03532 0.93230 1.23140 0.85236 1.01108 0.92977 1.88496 1.36554 1.80211 1.23706 1.23748 0.91559 1.00053 0.88144 1.22311 0.97778 0.84792 0.93964 0.93798 0.92630 0.93167 0.94250 0.91499 0.86489 0.92323 0.92407 0.78557 0.88611 0.89389 0.90398 0.90438 0.90588 0.87784 0.79802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.46 6.23 -26.73 -0.17 -2.63 16 3 C 0.11 2.47 5.29 -4.04 -0.02 2.45 16 4 N -0.84 -19.93 2.85 -59.91 -0.17 -20.10 16 5 C -0.29 -7.31 8.87 -15.06 -0.13 -7.45 16 6 H 0.09 2.22 7.94 -52.49 -0.42 1.81 16 7 C 0.04 1.02 4.98 -17.43 -0.09 0.94 16 8 N -0.86 -22.68 11.27 55.49 0.63 -22.05 16 9 Si 0.91 19.78 29.62 -169.99 -5.03 14.75 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 S 2.67 59.98 5.80 -107.50 -0.62 59.35 16 14 O -0.97 -24.59 17.08 -57.17 -0.98 -25.56 16 15 O -1.00 -23.48 16.39 -57.17 -0.94 -24.42 16 16 C -0.78 -14.43 6.17 -40.01 -0.25 -14.68 16 17 C 0.14 2.43 11.82 -17.36 -0.21 2.22 16 18 N -0.30 -4.90 12.58 30.63 0.39 -4.51 16 19 N -0.36 -5.11 3.68 -52.68 -0.19 -5.30 16 20 C 0.12 1.28 4.26 -65.68 -0.28 1.00 16 21 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 22 C -0.17 -1.43 6.72 -24.78 -0.17 -1.60 16 23 C 0.05 0.39 7.79 37.89 0.30 0.69 16 24 O -0.37 -3.71 11.36 -35.23 -0.40 -4.11 16 25 C 0.04 0.41 7.15 38.18 0.27 0.68 16 26 C 0.16 2.51 9.58 -17.22 -0.16 2.34 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.65 7.37 -51.93 -0.38 0.27 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.12 2.81 5.31 -51.93 -0.28 2.53 16 33 H 0.06 1.25 6.91 -51.93 -0.36 0.89 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.20 3.11 8.06 -52.49 -0.42 2.69 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.72 6.20 -51.93 -0.32 0.40 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.19 2.40 6.75 -52.49 -0.35 2.05 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -32.20 358.98 -8.35 -40.55 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.90 Total: 3.86 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.53 Total: -17.86 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.65 Total: -51.97 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -2.31 Total: -54.09 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Atomic # 16 Polarization: 59.98 SS G_CDS: -0.62 Total: 59.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.20 -8.35 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.951 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds