Wall clock time and date at job start Tue Mar 31 2020 04:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47158 * 2 1 4 4 N 1.46493 * 109.47334 * 120.00588 * 2 1 3 5 5 C 1.46501 * 119.99683 * 306.31103 * 4 2 1 6 6 C 1.50695 * 109.47198 * 87.83794 * 5 4 2 7 7 C 1.32631 * 125.17730 * 82.90884 * 6 5 4 8 8 C 1.40130 * 115.63381 * 180.02562 * 7 6 5 9 9 C 1.33820 * 113.70762 * 359.96852 * 8 7 6 10 10 S 1.75591 * 125.17311 * 262.90724 * 6 5 4 11 11 C 1.52169 * 110.69161 * 180.10030 * 9 8 7 12 12 C 1.54223 * 104.81200 * 17.36102 * 11 9 8 13 13 C 1.52793 * 136.53805 * 179.97438 * 8 7 6 14 14 S 1.65598 * 120.00132 * 126.30771 * 4 2 1 15 15 O 1.42096 * 106.40073 * 23.54242 * 14 4 2 16 16 O 1.42103 * 106.40115 * 156.46188 * 14 4 2 17 17 C 1.76198 * 107.22141 * 270.00106 * 14 4 2 18 18 H 1.08002 * 119.99564 * 359.97438 * 17 14 4 19 19 C 1.37879 * 120.00537 * 180.02562 * 17 14 4 20 20 N 1.31510 * 119.99477 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00092 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47128 * 89.99920 * 21 19 17 23 23 H 1.48496 * 109.46671 * 209.99606 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99546 * 21 19 17 25 25 H 1.09005 * 109.46891 * 309.14323 * 1 2 3 26 26 H 1.09006 * 109.47046 * 69.13829 * 1 2 3 27 27 H 1.08995 * 109.47304 * 189.14067 * 1 2 3 28 28 H 1.09009 * 109.46917 * 240.00645 * 2 1 3 29 29 H 1.09002 * 109.46863 * 184.19219 * 3 2 1 30 30 H 1.09000 * 109.47720 * 304.19939 * 3 2 1 31 31 H 1.09005 * 109.47117 * 64.19690 * 3 2 1 32 32 H 1.08999 * 109.47339 * 327.83046 * 5 4 2 33 33 H 1.09001 * 109.46849 * 207.83433 * 5 4 2 34 34 H 1.08001 * 122.18536 * 0.03019 * 7 6 5 35 35 H 1.08992 * 110.35607 * 258.53976 * 11 9 8 36 36 H 1.09004 * 110.40149 * 136.20202 * 11 9 8 37 37 H 1.08998 * 110.97400 * 215.43397 * 12 11 9 38 38 H 1.09002 * 110.97689 * 91.69182 * 12 11 9 39 39 H 1.09002 * 110.32144 * 43.55679 * 13 8 7 40 40 H 1.08999 * 110.41655 * 281.39062 * 13 8 7 41 41 H 0.97004 * 120.00067 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5542 -0.2759 2.5222 6 6 0.2860 -1.0145 2.8643 7 6 0.2277 -2.2396 3.3690 8 6 -1.0606 -2.7349 3.6112 9 6 -2.0360 -1.8772 3.2891 10 16 -1.3394 -0.3841 2.6552 11 6 -3.4016 -2.4818 3.5811 12 6 -3.1159 -3.6577 4.5372 13 6 -1.6677 -4.0256 4.1589 14 16 3.0950 -1.9403 1.0490 15 8 3.7576 -1.7548 -0.1943 16 8 3.7815 -2.0267 2.2902 17 6 2.1555 -3.4230 0.8958 18 1 1.0764 -3.3824 0.9110 19 6 2.7979 -4.6352 0.7576 20 7 4.1120 -4.6845 0.7395 21 14 1.8018 -6.2069 0.5944 22 1 1.5255 -6.4712 -0.8405 23 1 2.5697 -7.3413 1.1678 24 1 0.5183 -6.0578 1.3264 25 1 -0.3633 0.6488 0.7971 26 1 -0.3633 0.3660 -0.9603 27 1 -0.3633 -1.0146 0.1632 28 1 1.8934 -0.5138 -0.8901 29 1 3.1275 1.4433 -0.0751 30 1 1.6166 1.9776 -0.8499 31 1 1.7394 1.9341 0.9252 32 1 1.3608 0.7968 2.5204 33 1 2.3197 -0.5058 3.2634 34 1 1.1153 -2.8178 3.5798 35 1 -3.8605 -2.8438 2.6612 36 1 -4.0466 -1.7480 4.0645 37 1 -3.7930 -4.4900 4.3452 38 1 -3.1782 -3.3387 5.5776 39 1 -1.1190 -4.3579 5.0401 40 1 -1.6619 -4.8028 3.3947 41 1 4.5640 -5.5372 0.6419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:15 Heat of formation + Delta-G solvation = -58.863712 kcal Electronic energy + Delta-G solvation = -25258.170427 eV Core-core repulsion = 21777.002678 eV Total energy + Delta-G solvation = -3481.167749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.091 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -39.13042 -37.27092 -35.41474 -34.28384 -33.96114 -33.05206 -31.15962 -28.33226 -28.02039 -26.85779 -26.08896 -24.89960 -21.74886 -20.78910 -20.19841 -18.62469 -18.02336 -17.59363 -16.76029 -16.19501 -15.59743 -15.21585 -14.92794 -14.37501 -14.13562 -13.73553 -13.48447 -13.40370 -12.91706 -12.82348 -12.61628 -12.56665 -12.02615 -11.98634 -11.86457 -11.60748 -11.43931 -11.21629 -11.19336 -11.11473 -11.06204 -10.96601 -10.84281 -10.59110 -10.51995 -10.31337 -10.29294 -10.05310 -9.94570 -9.22559 -8.93743 -8.33178 -8.04830 -7.77310 -6.67366 -5.27217 1.35409 1.84113 2.27952 2.38334 3.06667 3.11526 3.14659 3.21141 4.07331 4.53846 4.63187 4.66753 4.69152 4.99967 5.12140 5.29742 5.45482 5.52703 5.57368 5.61647 5.65373 5.69211 5.78133 5.85002 5.87576 5.93470 5.96337 6.01238 6.08006 6.11831 6.18712 6.23448 6.25391 6.42057 6.50311 6.63995 6.68561 6.77962 6.87188 6.96712 7.36271 7.58950 8.05287 8.93030 10.26353 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.007183 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.049927 B = 3897.172394 C = 5734.739946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 C -0.160 4.160 4 N -0.999 5.999 5 C 0.195 3.805 6 C -0.187 4.187 7 C -0.094 4.094 8 C -0.114 4.114 9 C -0.222 4.222 10 S 0.105 5.895 11 C -0.039 4.039 12 C -0.117 4.117 13 C -0.062 4.062 14 S 2.710 3.290 15 O -1.004 7.004 16 O -1.004 7.004 17 C -1.010 5.010 18 H 0.104 0.896 19 C 0.136 3.864 20 N -0.848 5.848 21 Si 0.914 3.086 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.628 6.392 4.567 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 C -0.219 4.219 4 N -0.832 5.832 5 C 0.066 3.934 6 C -0.306 4.306 7 C -0.124 4.124 8 C -0.126 4.126 9 C -0.339 4.339 10 S 0.371 5.629 11 C -0.079 4.079 12 C -0.156 4.156 13 C -0.101 4.101 14 S 2.812 3.188 15 O -0.995 6.995 16 O -0.995 6.995 17 C -1.143 5.143 18 H 0.122 0.878 19 C -0.082 4.082 20 N -0.478 5.478 21 Si 0.738 3.262 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.185 1.185 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.165 0.835 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.056 7.849 3.994 15.748 hybrid contribution -0.470 -2.565 0.259 2.620 sum -13.526 5.284 4.253 15.131 Atomic orbital electron populations 1.22376 0.95615 1.02778 1.00948 1.20723 0.93977 0.93230 0.88428 1.22163 1.01860 0.96446 1.01411 1.58169 1.63722 1.52068 1.09274 1.19507 0.90950 0.97338 0.85594 1.24669 0.97808 0.99852 1.08227 1.19809 0.97772 0.94823 0.99978 1.20448 0.92279 0.97094 1.02810 1.25848 1.00357 0.98945 1.08746 1.83701 0.98669 1.16188 1.64375 1.20740 0.91555 0.96222 0.99365 1.22284 0.96410 0.97586 0.99305 1.21007 0.94321 0.94166 1.00627 1.00650 0.72496 0.72879 0.72807 1.93352 1.73425 1.86790 1.45890 1.93342 1.72569 1.87107 1.46452 1.30581 1.06867 1.11360 1.65534 0.87792 1.24700 0.94541 1.00252 0.88680 1.69898 1.08046 1.29496 1.40379 0.86260 0.80528 0.80125 0.79310 1.19315 1.20081 1.18480 0.92726 0.92268 0.91481 0.88244 0.92189 0.92060 0.92740 0.90270 0.87422 0.83456 0.90571 0.91300 0.90548 0.90949 0.90865 0.90367 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 7.39 37.16 0.27 -2.08 16 2 C 0.14 2.49 3.18 -67.93 -0.22 2.27 16 3 C -0.16 -2.30 9.31 37.16 0.35 -1.95 16 4 N -1.00 -20.15 2.71 -108.57 -0.29 -20.44 16 5 C 0.19 3.39 5.55 -5.20 -0.03 3.37 16 6 C -0.19 -3.22 5.11 -36.21 -0.19 -3.40 16 7 C -0.09 -1.73 9.52 -40.77 -0.39 -2.12 16 8 C -0.11 -1.87 6.54 -104.42 -0.68 -2.55 16 9 C -0.22 -3.28 7.35 -35.13 -0.26 -3.54 16 10 S 0.10 1.51 19.62 -107.50 -2.11 -0.60 16 11 C -0.04 -0.45 6.81 -26.51 -0.18 -0.63 16 12 C -0.12 -1.23 7.12 -25.50 -0.18 -1.41 16 13 C -0.06 -0.84 6.81 -26.25 -0.18 -1.02 16 14 S 2.71 71.51 4.96 -107.50 -0.53 70.98 16 15 O -1.00 -29.28 16.66 -57.17 -0.95 -30.23 16 16 O -1.00 -28.71 16.60 -57.17 -0.95 -29.66 16 17 C -1.01 -27.34 9.49 30.60 0.29 -27.05 16 18 H 0.10 2.66 7.55 -52.49 -0.40 2.26 16 19 C 0.14 3.76 5.46 -17.82 -0.10 3.66 16 20 N -0.85 -24.85 13.19 55.43 0.73 -24.12 16 21 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.05 0.74 5.53 -49.18 -0.27 0.47 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.12 7.46 -51.93 -0.39 0.73 16 28 H 0.10 1.91 7.04 -51.92 -0.37 1.54 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.70 6.80 -51.93 -0.35 0.35 16 32 H 0.08 1.13 6.71 -51.93 -0.35 0.78 16 33 H 0.11 1.97 6.97 -51.93 -0.36 1.60 16 34 H 0.15 3.02 8.06 -52.49 -0.42 2.59 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -33.70 351.93 -11.16 -44.86 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.85 Total: 4.77 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: -1.49 Total: -36.46 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.44 Total: -44.56 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.90 Total: -59.89 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 73.02 SS G_CDS: -2.64 Total: 70.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.70 -11.16 -44.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.008 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds