Wall clock time and date at job start Tue Mar 31 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38777 * 119.90373 * 2 1 4 4 N 1.31771 * 120.12467 * 179.97438 * 3 2 1 5 5 C 1.33048 * 119.93050 * 0.02838 * 4 3 2 6 6 C 1.48103 * 120.10092 * 180.02562 * 5 4 3 7 7 O 1.21537 * 119.99869 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99674 * 359.97438 * 6 5 4 9 9 C 1.40039 * 119.99593 * 185.40881 * 8 6 5 10 10 C 1.38680 * 120.10174 * 24.80266 * 9 8 6 11 11 C 1.38235 * 120.00879 * 179.97438 * 10 9 8 12 12 C 1.38306 * 120.21072 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.20936 * 0.02562 * 12 11 10 14 14 C 1.38786 * 119.98422 * 359.67679 * 13 12 11 15 15 S 1.76204 * 120.10308 * 180.30093 * 14 13 12 16 16 C 1.81396 * 103.00119 * 0.27479 * 15 14 13 17 17 C 1.50700 * 109.47223 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99646 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47207 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47190 * 119.99953 * 21 19 17 24 24 H 1.48505 * 109.46805 * 239.99887 * 21 19 17 25 25 C 1.39426 * 119.80141 * 0.27064 * 5 4 3 26 26 N 1.32107 * 119.86979 * 359.41709 * 25 5 4 27 27 H 1.09004 * 109.47674 * 89.99592 * 1 2 3 28 28 H 1.09002 * 109.47367 * 209.99296 * 1 2 3 29 29 H 1.09003 * 109.47538 * 329.99769 * 1 2 3 30 30 H 1.07994 * 119.93412 * 359.97438 * 3 2 1 31 31 H 0.96993 * 120.00562 * 5.68842 * 8 6 5 32 32 H 1.08001 * 119.99484 * 359.97210 * 10 9 8 33 33 H 1.07999 * 119.89586 * 179.97438 * 11 10 9 34 34 H 1.08005 * 119.89996 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.00970 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47093 * 300.00115 * 16 15 14 37 37 H 1.08999 * 109.47263 * 60.00105 * 16 15 14 38 38 H 0.97001 * 119.99792 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.06311 * 179.72333 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5164 1.2081 0.0005 5 6 4.1847 0.0576 0.0005 6 6 5.6658 0.0589 0.0016 7 8 6.2743 -0.9931 0.0020 8 7 6.3385 1.2268 0.0022 9 6 7.7343 1.2307 -0.1111 10 6 8.3858 0.1684 -0.7198 11 6 9.7636 0.1745 -0.8310 12 6 10.4970 1.2376 -0.3362 13 6 9.8571 2.3003 0.2730 14 6 8.4736 2.3058 0.3836 15 16 7.6539 3.6628 1.1527 16 6 9.0232 4.7620 1.6076 17 6 8.4765 5.9904 2.2883 18 1 7.4117 6.0990 2.4324 19 6 9.3355 6.9759 2.7262 20 7 10.6322 6.8438 2.5502 21 14 8.6578 8.4981 3.5706 22 1 7.1777 8.4049 3.6458 23 1 9.2186 8.5943 4.9423 24 1 9.0385 9.7055 2.7943 25 6 3.4866 -1.1493 -0.0059 26 7 2.1656 -1.1452 -0.0001 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5139 30 1 1.6561 2.1367 -0.0004 31 1 5.8564 2.0643 0.0851 32 1 7.8165 -0.6637 -1.1069 33 1 10.2691 -0.6538 -1.3050 34 1 11.5733 1.2374 -0.4262 35 1 10.4329 3.1290 0.6578 36 1 9.6976 4.2405 2.2868 37 1 9.5672 5.0555 0.7098 38 1 11.2366 7.5370 2.8586 39 1 4.0248 -2.0856 -0.0104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:45 Heat of formation + Delta-G solvation = 35.749406 kcal Electronic energy + Delta-G solvation = -23805.403768 eV Core-core repulsion = 20225.187551 eV Total energy + Delta-G solvation = -3580.216217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69392 -40.21433 -38.13506 -35.22684 -34.58962 -33.28341 -33.24589 -30.79539 -29.91681 -28.63951 -28.40670 -25.01844 -24.38725 -23.44256 -22.78824 -22.16736 -20.62353 -18.58552 -18.27154 -17.33723 -16.55856 -16.34038 -16.29399 -15.87700 -15.58612 -15.06735 -14.93678 -14.56066 -14.30901 -13.99526 -13.42158 -13.29233 -13.13116 -13.01643 -12.94330 -12.87728 -12.41277 -12.27238 -12.04692 -11.83601 -11.56305 -11.30782 -10.99315 -10.77946 -10.53703 -10.25543 -10.00147 -9.70533 -9.62896 -9.46392 -9.25663 -9.16354 -8.67229 -8.04568 -6.61988 -6.30180 -4.35897 -0.02814 0.66362 1.48124 1.66058 2.33649 2.51588 2.83731 3.18989 3.26607 3.31546 3.40288 3.52312 3.62457 3.67905 3.99456 4.07572 4.26677 4.38330 4.59890 4.70045 5.05500 5.07576 5.08407 5.19774 5.23380 5.30525 5.46939 5.54533 5.74295 5.77437 5.88834 6.15357 6.40360 6.50864 6.63361 6.74654 6.82830 6.91698 6.94869 7.19598 7.24459 7.43520 7.63025 7.85521 7.92664 8.65388 9.28320 10.81036 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.003219 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.673681 B = 8695.100063 C =11075.276339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.102 3.898 3 C 0.055 3.945 4 N -0.404 5.404 5 C 0.021 3.979 6 C 0.576 3.424 7 O -0.513 6.513 8 N -0.636 5.636 9 C 0.144 3.856 10 C -0.116 4.116 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.115 4.115 14 C -0.093 4.093 15 S -0.166 6.166 16 C 0.076 3.924 17 C -0.519 4.519 18 H 0.069 0.931 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.119 3.881 26 N -0.442 5.442 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.179 0.821 31 H 0.424 0.576 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.267 0.733 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 -13.475 -7.293 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 C -0.109 4.109 4 N -0.121 5.121 5 C -0.119 4.119 6 C 0.361 3.639 7 O -0.389 6.389 8 N -0.280 5.280 9 C 0.044 3.956 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.139 4.139 14 C -0.208 4.208 15 S 0.081 5.919 16 C -0.071 4.071 17 C -0.558 4.558 18 H 0.087 0.913 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.041 4.041 26 N -0.158 5.158 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.196 0.804 31 H 0.264 0.736 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.117 -13.834 -7.008 21.657 hybrid contribution 0.988 1.160 0.324 1.558 sum -14.130 -12.674 -6.683 20.123 Atomic orbital electron populations 1.20778 0.87080 1.04489 1.03922 1.22723 0.98957 0.89717 0.92609 1.23749 0.89999 0.99643 0.97477 1.68372 1.09413 1.28497 1.05777 1.22030 0.95309 0.91284 1.03310 1.17647 0.85218 0.83981 0.77069 1.90765 1.67902 1.31204 1.48998 1.43302 1.05579 1.10013 1.69072 1.17214 0.81512 0.96029 1.00859 1.21203 0.94863 0.98361 0.99347 1.20938 0.93364 0.98641 1.01434 1.21062 0.99749 0.93846 0.98884 1.21241 0.92438 0.99813 1.00447 1.21833 0.96631 0.99238 1.03110 1.85165 1.21185 1.15658 1.69901 1.21385 0.91309 0.94448 0.99910 1.20648 0.94106 1.01856 1.39207 0.91275 1.24952 0.94701 0.98492 0.95512 1.69955 1.02084 1.34652 1.45923 0.86267 0.79355 0.81802 0.79077 1.19371 1.20629 1.20620 1.23818 0.89925 0.99170 0.91190 1.68499 1.08154 1.28980 1.10122 0.89401 0.89758 0.89642 0.80364 0.73638 0.83896 0.85994 0.85998 0.84587 0.93656 0.93659 0.92347 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.00 0.37 -0.11 16 2 C 0.10 0.85 6.79 -82.28 -0.56 0.29 16 3 C 0.05 0.49 10.88 -17.38 -0.19 0.30 16 4 N -0.40 -4.88 9.72 -9.62 -0.09 -4.97 16 5 C 0.02 0.27 6.75 -82.85 -0.56 -0.29 16 6 C 0.58 8.62 7.62 -12.21 -0.09 8.53 16 7 O -0.51 -8.30 13.51 5.33 0.07 -8.23 16 8 N -0.64 -10.26 5.16 -10.49 -0.05 -10.32 16 9 C 0.14 2.55 6.44 -83.46 -0.54 2.01 16 10 C -0.12 -1.88 8.72 -39.42 -0.34 -2.22 16 11 C -0.12 -1.78 10.04 -39.56 -0.40 -2.18 16 12 C -0.11 -1.78 10.04 -39.57 -0.40 -2.18 16 13 C -0.11 -2.11 9.36 -39.39 -0.37 -2.48 16 14 C -0.09 -1.79 6.12 -38.89 -0.24 -2.03 16 15 S -0.17 -3.52 20.55 -107.50 -2.21 -5.73 16 16 C 0.08 1.90 4.09 36.01 0.15 2.05 16 17 C -0.52 -14.06 9.13 -34.44 -0.31 -14.38 16 18 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 21 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 C 0.12 1.32 10.77 -16.99 -0.18 1.14 16 26 N -0.44 -4.61 10.41 -8.94 -0.09 -4.71 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 30 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.42 6.77 6.99 -40.82 -0.29 6.48 16 32 H 0.14 2.23 5.78 -52.49 -0.30 1.93 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 35 H 0.14 2.65 5.88 -52.49 -0.31 2.34 16 36 H 0.05 1.18 7.74 -51.92 -0.40 0.78 16 37 H 0.05 1.17 7.76 -51.92 -0.40 0.77 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.18 1.78 7.65 -52.49 -0.40 1.38 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -31.01 352.26 -9.29 -40.30 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.18 Total: 6.71 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -3.76 Total: -9.79 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.50 Total: -44.27 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.21 Total: -5.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.01 -9.29 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.054 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds