Wall clock time and date at job start Tue Mar 31 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38777 * 119.90373 * 2 1 4 4 N 1.31771 * 120.12467 * 179.97438 * 3 2 1 5 5 C 1.33048 * 119.93050 * 0.02838 * 4 3 2 6 6 C 1.48103 * 120.10092 * 180.02562 * 5 4 3 7 7 O 1.21537 * 119.99869 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99674 * 359.97438 * 6 5 4 9 9 C 1.40039 * 119.99593 * 185.40881 * 8 6 5 10 10 C 1.38680 * 120.10174 * 24.80266 * 9 8 6 11 11 C 1.38235 * 120.00879 * 179.97438 * 10 9 8 12 12 C 1.38306 * 120.21072 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.20936 * 0.02562 * 12 11 10 14 14 C 1.38786 * 119.98422 * 359.67679 * 13 12 11 15 15 S 1.76204 * 120.10308 * 180.30093 * 14 13 12 16 16 C 1.81396 * 103.00119 * 0.27479 * 15 14 13 17 17 C 1.50700 * 109.47223 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99646 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47207 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47190 * 119.99953 * 21 19 17 24 24 H 1.48505 * 109.46805 * 239.99887 * 21 19 17 25 25 C 1.39426 * 119.80141 * 0.27064 * 5 4 3 26 26 N 1.32107 * 119.86979 * 359.41709 * 25 5 4 27 27 H 1.09004 * 109.47674 * 89.99592 * 1 2 3 28 28 H 1.09002 * 109.47367 * 209.99296 * 1 2 3 29 29 H 1.09003 * 109.47538 * 329.99769 * 1 2 3 30 30 H 1.07994 * 119.93412 * 359.97438 * 3 2 1 31 31 H 0.96993 * 120.00562 * 5.68842 * 8 6 5 32 32 H 1.08001 * 119.99484 * 359.97210 * 10 9 8 33 33 H 1.07999 * 119.89586 * 179.97438 * 11 10 9 34 34 H 1.08005 * 119.89996 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.00970 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47093 * 300.00115 * 16 15 14 37 37 H 1.08999 * 109.47263 * 60.00105 * 16 15 14 38 38 H 0.97001 * 119.99792 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.06311 * 179.72333 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5164 1.2081 0.0005 5 6 4.1847 0.0576 0.0005 6 6 5.6658 0.0589 0.0016 7 8 6.2743 -0.9931 0.0020 8 7 6.3385 1.2268 0.0022 9 6 7.7343 1.2307 -0.1111 10 6 8.3858 0.1684 -0.7198 11 6 9.7636 0.1745 -0.8310 12 6 10.4970 1.2376 -0.3362 13 6 9.8571 2.3003 0.2730 14 6 8.4736 2.3058 0.3836 15 16 7.6539 3.6628 1.1527 16 6 9.0232 4.7620 1.6076 17 6 8.4765 5.9904 2.2883 18 1 7.4117 6.0990 2.4324 19 6 9.3355 6.9759 2.7262 20 7 10.6322 6.8438 2.5502 21 14 8.6578 8.4981 3.5706 22 1 7.1777 8.4049 3.6458 23 1 9.2186 8.5943 4.9423 24 1 9.0385 9.7055 2.7943 25 6 3.4866 -1.1493 -0.0059 26 7 2.1656 -1.1452 -0.0001 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5139 30 1 1.6561 2.1367 -0.0004 31 1 5.8564 2.0643 0.0851 32 1 7.8165 -0.6637 -1.1069 33 1 10.2691 -0.6538 -1.3050 34 1 11.5733 1.2374 -0.4262 35 1 10.4329 3.1290 0.6578 36 1 9.6976 4.2405 2.2868 37 1 9.5672 5.0555 0.7098 38 1 11.2366 7.5370 2.8586 39 1 4.0248 -2.0856 -0.0104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:43 Heat of formation + Delta-G solvation = 16.742734 kcal Electronic energy + Delta-G solvation = -23806.227960 eV Core-core repulsion = 20225.187551 eV Total energy + Delta-G solvation = -3581.040408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.56620 -41.36451 -39.40389 -36.26272 -35.62564 -35.32351 -33.95920 -32.19408 -31.05424 -30.62630 -29.25089 -25.84401 -25.56244 -25.04171 -24.11871 -23.36981 -21.79974 -19.79542 -19.26979 -18.75856 -18.14871 -17.78336 -17.08542 -16.90041 -16.82027 -16.56354 -16.01945 -15.87153 -15.47302 -15.19249 -14.82270 -14.75359 -14.63709 -14.27224 -13.99567 -13.79774 -13.65375 -13.24964 -13.17770 -12.83075 -12.82264 -12.78725 -12.56485 -12.34355 -11.94947 -11.73334 -11.63432 -11.30360 -10.99465 -10.87873 -10.56115 -10.38326 -10.29470 -9.37847 -8.37294 -8.24933 -6.51663 -0.87468 -0.11373 0.18751 0.31075 0.72304 1.39707 1.40231 1.44365 1.54304 1.67426 1.80024 2.34454 2.54006 2.71877 2.76951 2.96136 2.98092 3.23037 3.56643 3.84100 3.86251 3.99249 4.12813 4.33378 4.41850 4.43199 4.44626 4.77147 4.81382 4.83202 4.84172 4.87951 4.99482 5.09487 5.22558 5.32400 5.37088 5.50499 5.53333 5.79957 5.91833 5.97570 6.14150 6.51288 6.55387 6.72767 7.17221 8.75013 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.003219 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.673681 B = 8695.100063 C =11075.276339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.114 3.886 3 C 0.056 3.944 4 N -0.428 5.428 5 C -0.005 4.005 6 C 0.578 3.422 7 O -0.530 6.530 8 N -0.642 5.642 9 C 0.141 3.859 10 C -0.123 4.123 11 C -0.103 4.103 12 C -0.112 4.112 13 C -0.130 4.130 14 C -0.120 4.120 15 S -0.161 6.161 16 C 0.084 3.916 17 C -0.541 4.541 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.921 5.921 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.272 1.272 25 C 0.121 3.879 26 N -0.458 5.458 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.215 0.785 31 H 0.423 0.577 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.272 0.728 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.464 -14.121 -7.808 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.029 4.029 3 C -0.109 4.109 4 N -0.145 5.145 5 C -0.143 4.143 6 C 0.365 3.635 7 O -0.406 6.406 8 N -0.285 5.285 9 C 0.041 3.959 10 C -0.144 4.144 11 C -0.124 4.124 12 C -0.132 4.132 13 C -0.155 4.155 14 C -0.235 4.235 15 S 0.084 5.916 16 C -0.063 4.063 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.038 4.038 26 N -0.173 5.173 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.231 0.769 31 H 0.261 0.739 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.133 0.867 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -17.056 -14.527 -7.537 23.638 hybrid contribution 1.478 1.215 0.397 1.954 sum -15.578 -13.313 -7.141 21.700 Atomic orbital electron populations 1.20968 0.83936 1.05844 1.05332 1.23440 1.00824 0.88932 0.89658 1.24409 0.88980 1.01394 0.96079 1.68313 1.11114 1.28502 1.06547 1.21674 0.93918 0.92271 1.06447 1.17996 0.86317 0.83236 0.75982 1.90727 1.68688 1.31473 1.49744 1.43365 1.05090 1.10476 1.69585 1.17409 0.82312 0.95776 1.00428 1.21455 0.95823 0.97975 0.99171 1.21406 0.92693 0.98941 0.99315 1.21374 1.01352 0.92819 0.97688 1.21245 0.92197 1.00516 1.01508 1.21799 0.97188 0.99263 1.05253 1.84819 1.19435 1.16255 1.71138 1.21003 0.92252 0.94835 0.98252 1.20973 0.94189 1.03005 1.39848 0.91509 1.25903 0.94915 1.01644 0.95904 1.70061 1.03355 1.35863 1.46682 0.85199 0.78909 0.77730 0.78045 1.18665 1.19887 1.19724 1.23893 0.90411 0.98839 0.90643 1.68607 1.07639 1.30055 1.11044 0.87635 0.89688 0.87011 0.76884 0.73850 0.83108 0.81876 0.82970 0.86698 0.96036 0.95781 0.91932 0.79234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 71.23 0.73 0.15 16 2 C 0.11 1.64 6.79 42.64 0.29 1.93 16 3 C 0.06 0.88 10.88 84.83 0.92 1.80 16 4 N -0.43 -10.09 9.72 -184.34 -1.79 -11.88 16 5 C 0.00 -0.12 6.75 41.87 0.28 0.16 16 6 C 0.58 17.56 7.62 86.86 0.66 18.22 16 7 O -0.53 -17.17 13.51 -3.83 -0.05 -17.22 16 8 N -0.64 -21.20 5.16 -305.38 -1.58 -22.77 16 9 C 0.14 5.06 6.44 38.25 0.25 5.30 16 10 C -0.12 -3.84 8.72 22.37 0.20 -3.65 16 11 C -0.10 -2.75 10.04 22.29 0.22 -2.52 16 12 C -0.11 -3.33 10.04 22.28 0.22 -3.10 16 13 C -0.13 -4.95 9.36 22.39 0.21 -4.74 16 14 C -0.12 -4.79 6.12 22.72 0.14 -4.66 16 15 S -0.16 -7.20 20.55 -56.49 -1.16 -8.36 16 16 C 0.08 4.44 4.09 71.24 0.29 4.73 16 17 C -0.54 -30.36 9.13 25.60 0.23 -30.13 16 18 H 0.07 3.69 7.71 -2.91 -0.02 3.67 16 19 C 0.02 0.99 5.46 84.65 0.46 1.45 16 20 N -0.92 -53.27 13.29 21.45 0.28 -52.99 16 21 Si 0.98 42.77 29.54 68.60 2.03 44.79 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 C 0.12 2.64 10.77 84.94 0.92 3.55 16 26 N -0.46 -8.91 10.41 -182.20 -1.90 -10.81 16 27 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 0.09 8.09 -2.39 -0.02 0.07 16 30 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.42 13.97 6.99 -92.71 -0.65 13.32 16 32 H 0.15 4.52 5.78 -2.91 -0.02 4.50 16 33 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.12 4.80 5.88 -2.91 -0.02 4.78 16 36 H 0.02 1.20 7.74 -2.39 -0.02 1.19 16 37 H 0.02 1.34 7.76 -2.39 -0.02 1.32 16 38 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.19 3.69 7.65 -2.91 -0.02 3.66 16 Total: -1.00 -69.79 352.26 2.31 -67.47 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.46 Total: 23.26 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 6.02 Total: -11.49 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.98 Total: -98.45 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.05 Total: -17.22 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.16 Total: -8.36 kcal Total: -69.79 2.31 -67.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.215 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds