Wall clock time and date at job start Tue Mar 31 2020 04:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.99739 * 2 1 4 4 C 1.54340 * 109.98926 * 238.96468 * 2 1 3 5 5 C 1.55156 * 103.01769 * 218.66073 * 4 2 1 6 6 H 1.09004 * 111.03893 * 277.21748 * 5 4 2 7 7 C 1.50705 * 111.00159 * 153.38256 * 5 4 2 8 8 C 1.38422 * 122.54148 * 126.08543 * 7 5 4 9 9 C 1.33386 * 114.92224 * 179.75779 * 8 7 5 10 10 S 1.75889 * 109.59228 * 0.48490 * 9 8 7 11 11 C 1.33393 * 122.53732 * 306.37902 * 7 5 4 12 12 C 1.54909 * 101.58212 * 35.31097 * 5 4 2 13 13 N 1.47022 * 109.88594 * 121.10022 * 2 1 3 14 14 S 1.65602 * 125.64495 * 298.39194 * 13 2 1 15 15 O 1.42097 * 104.27763 * 153.64640 * 14 13 2 16 16 O 1.42101 * 104.27810 * 25.78916 * 14 13 2 17 17 C 1.81405 * 104.45029 * 269.71733 * 14 13 2 18 18 C 1.53004 * 109.46868 * 180.02562 * 17 14 13 19 19 C 1.50695 * 109.46637 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00546 * 0.27598 * 19 18 17 21 21 C 1.37885 * 119.99721 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99853 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00131 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00224 * 23 21 19 27 27 H 1.09002 * 109.46763 * 298.90016 * 1 2 3 28 28 H 1.08998 * 109.47250 * 58.89985 * 1 2 3 29 29 H 1.09001 * 109.46952 * 178.90294 * 1 2 3 30 30 H 1.09005 * 110.84597 * 100.19967 * 4 2 1 31 31 H 1.08997 * 110.66939 * 337.04902 * 4 2 1 32 32 H 1.07997 * 122.53934 * 0.02562 * 8 7 5 33 33 H 1.08004 * 125.20175 * 180.20872 * 9 8 7 34 34 H 1.07992 * 125.20659 * 0.02562 * 11 7 5 35 35 H 1.08996 * 110.36338 * 204.14799 * 12 5 4 36 36 H 1.08996 * 110.36704 * 81.82703 * 12 5 4 37 37 H 1.09000 * 109.46827 * 60.00318 * 17 14 13 38 38 H 1.08997 * 109.47005 * 299.99727 * 17 14 13 39 39 H 1.08992 * 109.47421 * 60.00146 * 18 17 14 40 40 H 1.08997 * 109.46955 * 299.99599 * 18 17 14 41 41 H 0.97000 * 119.99706 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2864 -1.5183 -0.6916 6 1 4.1674 -0.8773 -0.6581 7 6 3.5551 -2.7587 -1.5041 8 6 4.7896 -3.0247 -2.0708 9 6 4.8598 -4.1679 -2.7544 10 16 3.2978 -4.9756 -2.7148 11 6 2.6196 -3.6808 -1.7365 12 6 2.8099 -1.8825 0.7367 13 7 2.0301 -0.7141 1.1838 14 16 1.7566 -0.2816 2.7588 15 8 1.8556 -1.5022 3.4797 16 8 0.5372 0.4468 2.7155 17 6 3.1397 0.8165 3.1734 18 6 2.9994 1.2888 4.6219 19 6 4.1480 2.2015 4.9661 20 1 4.9002 2.4263 4.2243 21 6 4.2353 2.7548 6.2260 22 7 3.3165 2.4854 7.1276 23 14 5.6596 3.8857 6.6529 24 1 6.5505 4.0265 5.4733 25 1 5.1338 5.2201 7.0377 26 1 6.4262 3.3098 7.7869 27 1 -0.3633 0.4967 0.8997 28 1 -0.3633 0.5308 -0.8799 29 1 -0.3633 -1.0275 -0.0197 30 1 2.3597 -0.0449 -2.0192 31 1 1.3066 -1.4404 -1.6226 32 1 5.6334 -2.3592 -1.9638 33 1 5.7398 -4.5386 -3.2590 34 1 1.6014 -3.6386 -1.3791 35 1 3.6656 -2.0412 1.3930 36 1 2.1802 -2.7718 0.7113 37 1 3.1309 1.6792 2.5071 38 1 4.0795 0.2769 3.0570 39 1 3.0083 0.4260 5.2879 40 1 2.0595 1.8283 4.7388 41 1 3.3781 2.8744 8.0141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:20 Heat of formation + Delta-G solvation = -45.778233 kcal Electronic energy + Delta-G solvation = -23873.965767 eV Core-core repulsion = 20393.365447 eV Total energy + Delta-G solvation = -3480.600320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.091 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.77228 -37.43540 -36.61520 -35.43086 -33.89269 -31.90082 -31.18885 -31.08051 -28.78001 -25.88149 -25.56496 -24.64092 -21.93087 -21.25519 -21.04322 -18.76080 -18.41470 -18.10105 -17.48381 -16.62343 -15.96892 -15.53932 -15.29292 -14.89387 -14.54802 -13.99178 -13.74545 -13.57041 -13.38161 -13.33777 -13.17871 -12.97903 -12.55069 -12.50756 -12.39614 -11.92086 -11.75462 -11.57738 -11.54254 -11.39016 -11.20293 -11.09776 -11.03658 -10.96865 -10.82141 -10.58764 -10.39253 -10.36825 -9.77224 -9.32509 -9.03423 -8.74953 -8.59566 -8.51360 -6.13175 -4.18682 0.72301 0.76952 1.41684 1.73995 2.42591 3.04022 3.24736 3.31966 3.35403 4.28230 4.30262 4.37154 4.42015 4.52817 4.80715 4.83570 4.93937 5.09199 5.15063 5.22074 5.29365 5.30386 5.41229 5.50182 5.56779 5.63277 5.71338 5.72288 5.74972 5.78415 5.95513 6.01587 6.14624 6.28376 6.31041 6.48855 6.53613 6.55602 7.29447 7.35448 7.80082 8.17014 8.84962 9.46124 10.97915 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002931 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.393321 B = 9551.230298 C =10337.380950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.044 4.044 6 H 0.096 0.904 7 C -0.088 4.088 8 C -0.126 4.126 9 C -0.213 4.213 10 S 0.088 5.912 11 C -0.205 4.205 12 C 0.133 3.867 13 N -1.015 6.015 14 S 2.604 3.396 15 O -0.962 6.962 16 O -0.958 6.958 17 C -0.589 4.589 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 -11.238 -22.673 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.066 4.066 6 H 0.114 0.886 7 C -0.101 4.101 8 C -0.157 4.157 9 C -0.349 4.349 10 S 0.352 5.648 11 C -0.341 4.341 12 C 0.008 3.992 13 N -0.851 5.851 14 S 2.704 3.296 15 O -0.953 6.953 16 O -0.949 6.949 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.187 -12.882 -22.510 25.962 hybrid contribution 1.952 2.176 0.683 3.002 sum 0.766 -10.705 -21.827 24.323 Atomic orbital electron populations 1.22546 0.94653 1.02662 1.04429 1.21271 0.94494 0.95631 0.84266 0.90636 1.22847 0.96553 0.99217 0.96726 1.21106 0.99125 0.93125 0.93260 0.88562 1.18707 0.93129 0.97278 1.00957 1.20132 0.98159 0.97824 0.99579 1.25582 1.01252 1.00065 1.07951 1.84307 1.04296 1.24841 1.51364 1.25469 1.03970 0.98344 1.06301 1.21965 0.94891 0.88300 0.94090 1.58984 1.66800 1.36962 1.22352 1.05363 0.77333 0.75683 0.71217 1.93539 1.87861 1.43674 1.70217 1.93487 1.41808 1.74864 1.84711 1.30493 1.17029 1.14087 1.10662 1.18966 0.99577 0.97791 0.84792 1.21043 1.08837 1.28297 0.97714 0.91998 1.25077 0.96472 0.96653 0.96320 1.69966 1.33960 1.44049 1.04868 0.86414 0.82020 0.80378 0.78485 1.19637 1.20786 1.20774 0.88701 0.91932 0.92616 0.90068 0.90370 0.84067 0.81938 0.81768 0.90402 0.91335 0.86278 0.86352 0.94892 0.94846 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.04 37.16 0.34 -1.86 16 2 C 0.15 1.70 3.66 -66.95 -0.24 1.46 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -0.99 5.90 -24.89 -0.15 -1.14 16 5 C -0.04 -0.40 3.34 -89.62 -0.30 -0.70 16 6 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 7 C -0.09 -0.78 4.89 -106.25 -0.52 -1.30 16 8 C -0.13 -1.03 9.95 -41.21 -0.41 -1.44 16 9 C -0.21 -1.61 11.23 29.04 0.33 -1.28 16 10 S 0.09 0.69 23.34 -107.50 -2.51 -1.82 16 11 C -0.21 -1.77 9.49 29.04 0.28 -1.50 16 12 C 0.13 1.57 6.32 -2.53 -0.02 1.55 16 13 N -1.02 -13.91 3.33 -104.42 -0.35 -14.26 16 14 S 2.60 47.45 5.64 -107.50 -0.61 46.85 16 15 O -0.96 -20.37 17.60 -57.54 -1.01 -21.38 16 16 O -0.96 -19.42 14.98 -57.54 -0.86 -20.28 16 17 C -0.59 -11.38 6.12 37.16 0.23 -11.15 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16 19 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 20 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.09 1.41 5.58 -51.93 -0.29 1.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.64 6.77 -51.93 -0.35 0.29 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.16 1.29 7.62 -52.49 -0.40 0.88 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.80 7.36 -51.93 -0.38 0.41 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 38 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -33.98 359.36 -11.26 -45.24 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.03 Total: -0.16 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -1.02 Total: -29.98 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.39 Total: -40.06 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.87 Total: -41.66 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 48.15 SS G_CDS: -3.12 Total: 45.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.98 -11.26 -45.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.538 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds