Wall clock time and date at job start Tue Mar 31 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.87052 * 2 1 4 4 C 1.54329 * 110.00814 * 121.09174 * 2 1 3 5 5 C 1.55154 * 102.93820 * 97.30116 * 4 2 1 6 6 H 1.08993 * 111.00822 * 277.38638 * 5 4 2 7 7 C 1.50708 * 111.00087 * 153.57562 * 5 4 2 8 8 C 1.38421 * 122.54025 * 119.99819 * 7 5 4 9 9 C 1.33387 * 114.92188 * 179.97438 * 8 7 5 10 10 S 1.75882 * 109.59393 * 0.02562 * 9 8 7 11 11 C 1.33387 * 122.53821 * 299.70587 * 7 5 4 12 12 C 1.54688 * 101.67873 * 35.33374 * 5 4 2 13 13 N 1.47015 * 109.88790 * 238.97917 * 2 1 3 14 14 S 1.65608 * 125.64674 * 59.32896 * 13 2 1 15 15 O 1.42095 * 104.27841 * 206.07403 * 14 13 2 16 16 O 1.42102 * 104.27658 * 333.93118 * 14 13 2 17 17 C 1.81406 * 104.44741 * 90.00044 * 14 13 2 18 18 C 1.52991 * 109.46937 * 179.97438 * 17 14 13 19 19 C 1.50698 * 109.47171 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00001 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00289 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00185 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46962 * 60.00207 * 23 21 19 25 25 H 1.48500 * 109.47543 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47669 * 300.00351 * 23 21 19 27 27 H 1.09007 * 109.47155 * 181.02066 * 1 2 3 28 28 H 1.08996 * 109.47412 * 301.01608 * 1 2 3 29 29 H 1.09001 * 109.46858 * 61.02428 * 1 2 3 30 30 H 1.08998 * 110.71876 * 215.66211 * 4 2 1 31 31 H 1.08998 * 110.72354 * 338.93623 * 4 2 1 32 32 H 1.07997 * 122.54102 * 0.02562 * 8 7 5 33 33 H 1.07999 * 125.20442 * 180.02562 * 9 8 7 34 34 H 1.08003 * 125.20616 * 0.03002 * 11 7 5 35 35 H 1.08997 * 110.39356 * 204.35708 * 12 5 4 36 36 H 1.09012 * 110.23396 * 82.11394 * 12 5 4 37 37 H 1.09000 * 109.47167 * 300.00580 * 17 14 13 38 38 H 1.09000 * 109.46895 * 59.99901 * 17 14 13 39 39 H 1.09008 * 109.47545 * 300.00011 * 18 17 14 40 40 H 1.09000 * 109.47377 * 60.00235 * 18 17 14 41 41 H 0.96998 * 119.99506 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0580 -0.7489 1.2418 5 6 2.3575 -2.1679 0.6905 6 1 1.4523 -2.7743 0.6600 7 6 3.4317 -2.8466 1.5008 8 6 3.2179 -4.0391 2.1703 9 6 4.2733 -4.5049 2.8399 10 16 5.6312 -3.4052 2.6394 11 6 4.6623 -2.3465 1.6225 12 6 2.8554 -1.8498 -0.7391 13 7 2.0301 -0.7125 -1.1847 14 16 1.7129 -0.3086 -2.7592 15 8 1.8439 -1.5329 -3.4683 16 8 0.4685 0.3752 -2.7017 17 6 3.0470 0.8346 -3.2108 18 6 2.8638 1.2846 -4.6615 19 6 3.9724 2.2338 -5.0369 20 1 4.7316 2.4908 -4.3130 21 6 4.0171 2.7750 -6.3043 22 7 3.0924 2.4625 -7.1857 23 14 5.3909 3.9521 -6.7693 24 1 6.7002 3.2662 -6.6259 25 1 5.2125 4.3898 -8.1771 26 1 5.3520 5.1366 -5.8746 27 1 -0.3634 -1.0276 0.0183 28 1 -0.3634 0.5295 0.8807 29 1 -0.3633 0.4979 -0.8990 30 1 2.9683 -0.2807 1.6163 31 1 1.2961 -0.7904 2.0201 32 1 2.2687 -4.5539 2.1512 33 1 4.2913 -5.4176 3.4169 34 1 5.0099 -1.4304 1.1683 35 1 2.7040 -2.7080 -1.3938 36 1 3.9085 -1.5690 -0.7178 37 1 3.0185 1.7040 -2.5539 38 1 4.0080 0.3312 -3.1055 39 1 2.8926 0.4149 -5.3181 40 1 1.9027 1.7879 -4.7672 41 1 3.1236 2.8435 -8.0771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:26 Heat of formation + Delta-G solvation = -45.083915 kcal Electronic energy + Delta-G solvation = -23878.584673 eV Core-core repulsion = 20398.014460 eV Total energy + Delta-G solvation = -3480.570213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79502 -37.44986 -36.62425 -35.43395 -33.89208 -31.83683 -31.18959 -31.08878 -28.72022 -25.94419 -25.56287 -24.64157 -21.97424 -21.37248 -20.86501 -18.86348 -18.47518 -18.12591 -17.35014 -16.55378 -15.74166 -15.66354 -15.22176 -15.02059 -14.56511 -14.13549 -13.66795 -13.48031 -13.45522 -13.36722 -13.07373 -13.00712 -12.62227 -12.48747 -12.31006 -11.99109 -11.75655 -11.62083 -11.55676 -11.45217 -11.22241 -11.07263 -10.97939 -10.93706 -10.71074 -10.58689 -10.38011 -10.37080 -9.75970 -9.33820 -9.02671 -8.77959 -8.58014 -8.50582 -6.12844 -4.18589 0.71824 0.77388 1.42306 1.74720 2.42705 3.03415 3.26779 3.31587 3.33409 4.27435 4.31101 4.37636 4.43611 4.52382 4.80299 4.82397 4.96474 5.10015 5.14594 5.22165 5.30677 5.34341 5.41679 5.48704 5.58871 5.63019 5.70275 5.71082 5.75401 5.83739 5.92936 6.08408 6.14766 6.25131 6.30645 6.48540 6.56047 6.58898 7.29065 7.35397 7.79861 8.17083 8.84500 9.46099 10.98188 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.003075 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.815263 B = 9102.681865 C =10204.163893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.039 4.039 6 H 0.093 0.907 7 C -0.089 4.089 8 C -0.127 4.127 9 C -0.214 4.214 10 S 0.091 5.909 11 C -0.206 4.206 12 C 0.125 3.875 13 N -1.015 6.015 14 S 2.605 3.395 15 O -0.963 6.963 16 O -0.958 6.958 17 C -0.589 4.589 18 C 0.029 3.971 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -11.082 22.726 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.061 4.061 6 H 0.112 0.888 7 C -0.101 4.101 8 C -0.157 4.157 9 C -0.350 4.350 10 S 0.354 5.646 11 C -0.341 4.341 12 C -0.001 4.001 13 N -0.851 5.851 14 S 2.705 3.295 15 O -0.953 6.953 16 O -0.948 6.948 17 C -0.723 4.723 18 C -0.010 4.010 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.522 -11.364 22.490 25.244 hybrid contribution -0.051 0.907 -0.610 1.094 sum 1.471 -10.457 21.880 24.295 Atomic orbital electron populations 1.22600 0.94606 1.02798 1.04525 1.21263 0.94575 0.95561 0.84272 0.90746 1.22822 1.01812 0.93886 0.96794 1.20983 0.96213 0.95888 0.93034 0.88839 1.18709 0.94733 0.95960 1.00741 1.20110 1.00042 0.96392 0.99173 1.25580 0.96653 1.04800 1.07919 1.84336 1.15613 1.16592 1.48016 1.25494 0.97176 1.05183 1.06259 1.22023 0.94343 0.89112 0.94612 1.58942 1.64669 1.39234 1.22225 1.05322 0.77079 0.75864 0.71249 1.93530 1.87755 1.43280 1.70766 1.93481 1.40062 1.76639 1.84636 1.30492 1.16568 1.14441 1.10766 1.18955 0.99408 0.97951 0.84729 1.20966 1.10347 1.27008 0.97751 0.92119 1.25069 0.96304 0.96716 0.96371 1.69946 1.33722 1.43802 1.05381 0.86524 0.82057 0.81065 0.77596 1.20063 1.21044 1.20071 0.92545 0.91994 0.88462 0.90478 0.89951 0.84186 0.81970 0.81625 0.89655 0.91522 0.86304 0.86373 0.94903 0.94833 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 8.97 37.16 0.33 -1.90 16 2 C 0.15 1.71 3.69 -66.95 -0.25 1.46 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.00 5.93 -24.90 -0.15 -1.15 16 5 C -0.04 -0.36 3.32 -89.74 -0.30 -0.66 16 6 H 0.09 0.84 8.08 -51.93 -0.42 0.43 16 7 C -0.09 -0.79 4.89 -106.25 -0.52 -1.31 16 8 C -0.13 -1.03 9.95 -41.21 -0.41 -1.44 16 9 C -0.21 -1.61 11.23 29.04 0.33 -1.28 16 10 S 0.09 0.72 23.34 -107.50 -2.51 -1.79 16 11 C -0.21 -1.78 9.53 29.04 0.28 -1.51 16 12 C 0.12 1.46 6.49 -2.65 -0.02 1.45 16 13 N -1.01 -13.91 3.34 -104.55 -0.35 -14.26 16 14 S 2.60 47.40 5.64 -107.50 -0.61 46.80 16 15 O -0.96 -20.27 17.27 -57.54 -0.99 -21.27 16 16 O -0.96 -19.34 14.84 -57.54 -0.85 -20.19 16 17 C -0.59 -11.43 6.12 37.15 0.23 -11.21 16 18 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 23 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.46 5.47 -51.93 -0.28 1.17 16 30 H 0.08 0.61 7.50 -51.93 -0.39 0.22 16 31 H 0.08 0.62 7.83 -51.93 -0.41 0.21 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.17 1.29 7.61 -52.48 -0.40 0.89 16 35 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 36 H 0.07 0.70 6.95 -51.92 -0.36 0.34 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 38 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 39 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -33.83 358.49 -11.22 -45.05 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.00 Total: 0.07 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -1.03 Total: -30.20 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.39 Total: -40.10 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.85 Total: -41.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 48.12 SS G_CDS: -3.12 Total: 45.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.83 -11.22 -45.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.031 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds