Wall clock time and date at job start Tue Mar 31 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.99996 * 2 1 4 4 C 1.54321 * 109.88465 * 238.89978 * 2 1 3 5 5 C 1.55152 * 102.94230 * 262.77690 * 4 2 1 6 6 H 1.09005 * 111.00567 * 82.57336 * 5 4 2 7 7 C 1.50703 * 111.00405 * 206.38378 * 5 4 2 8 8 C 1.38422 * 122.53938 * 239.99953 * 7 5 4 9 9 C 1.33391 * 114.92345 * 179.97438 * 8 7 5 10 10 S 1.75886 * 109.58914 * 0.02562 * 9 8 7 11 11 C 1.33386 * 122.53996 * 59.71480 * 7 5 4 12 12 C 1.55128 * 101.48787 * 324.33213 * 5 4 2 13 13 N 1.47027 * 109.88288 * 121.09024 * 2 1 3 14 14 S 1.65601 * 125.64569 * 300.44303 * 13 2 1 15 15 O 1.42096 * 104.27862 * 333.92778 * 14 13 2 16 16 O 1.42105 * 104.27565 * 206.06434 * 14 13 2 17 17 C 1.81399 * 104.44935 * 89.99792 * 14 13 2 18 18 C 1.53002 * 109.47165 * 179.97438 * 17 14 13 19 19 C 1.50706 * 109.46931 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99398 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00420 * 23 21 19 27 27 H 1.08998 * 109.47140 * 298.91507 * 1 2 3 28 28 H 1.09007 * 109.46902 * 58.90618 * 1 2 3 29 29 H 1.08995 * 109.47419 * 178.90440 * 1 2 3 30 30 H 1.09004 * 110.71957 * 21.14172 * 4 2 1 31 31 H 1.09001 * 110.71984 * 144.23548 * 4 2 1 32 32 H 1.08003 * 122.53969 * 359.95542 * 8 7 5 33 33 H 1.07996 * 125.20886 * 179.97438 * 9 8 7 34 34 H 1.08006 * 125.19751 * 0.02562 * 11 7 5 35 35 H 1.08997 * 110.49746 * 278.45296 * 12 5 4 36 36 H 1.09003 * 110.34394 * 156.05959 * 12 5 4 37 37 H 1.09004 * 109.47568 * 59.99655 * 17 14 13 38 38 H 1.09004 * 109.47089 * 299.99644 * 17 14 13 39 39 H 1.09000 * 109.46986 * 60.00120 * 18 17 14 40 40 H 1.08992 * 109.46974 * 300.00184 * 18 17 14 41 41 H 0.97000 * 119.99706 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 2.3519 -2.1695 -0.6922 6 1 1.4451 -2.7737 -0.6602 7 6 3.4229 -2.8506 -1.5046 8 6 3.2049 -4.0425 -2.1739 9 6 4.2576 -4.5102 -2.8464 10 16 5.6187 -3.4141 -2.6479 11 6 4.6512 -2.3479 -1.6377 12 6 2.8612 -1.8465 0.7370 13 7 2.0300 -0.7140 1.1840 14 16 1.7170 -0.3088 2.7589 15 8 1.4562 1.0873 2.7164 16 8 2.8268 -0.8252 3.4808 17 6 0.2073 -1.2262 3.1708 18 6 -0.1890 -0.9322 4.6191 19 6 -1.4437 -1.6939 4.9610 20 1 -1.9113 -2.3249 4.2197 21 6 -1.9944 -1.5851 6.2204 22 7 -1.4252 -0.8163 7.1229 23 14 -3.5491 -2.5298 6.6445 24 1 -3.9345 -2.2433 8.0497 25 1 -4.6464 -2.1109 5.7356 26 1 -3.3029 -3.9855 6.4852 27 1 -0.3633 0.4969 0.8995 28 1 -0.3633 0.5308 -0.8801 29 1 -0.3634 -1.0274 -0.0196 30 1 1.2918 -0.7891 -2.0200 31 1 2.9640 -0.2814 -1.6200 32 1 2.2545 -4.5551 -2.1529 33 1 4.2722 -5.4228 -3.4238 34 1 4.9991 -1.4279 -1.1913 35 1 3.9123 -1.5588 0.7117 36 1 2.7177 -2.7048 1.3935 37 1 0.3880 -2.2948 3.0537 38 1 -0.5981 -0.9187 2.5038 39 1 -0.3697 0.1363 4.7366 40 1 0.6164 -1.2400 5.2857 41 1 -0.6177 -0.3261 6.9027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:29 Heat of formation + Delta-G solvation = -50.853123 kcal Electronic energy + Delta-G solvation = -23993.349799 eV Core-core repulsion = 20512.529415 eV Total energy + Delta-G solvation = -3480.820384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.84610 -37.50246 -36.71198 -35.53552 -34.26642 -31.93853 -31.25530 -30.99969 -28.77310 -26.05188 -25.08344 -24.67074 -22.29560 -21.41165 -20.89326 -18.95599 -18.58482 -18.12824 -17.48246 -16.71581 -16.07327 -15.82383 -15.48441 -14.94574 -14.21924 -13.82559 -13.76650 -13.60571 -13.55611 -13.45794 -13.13548 -13.06622 -12.81746 -12.61047 -12.36990 -12.15150 -12.05911 -11.70648 -11.64821 -11.52859 -11.35774 -11.14016 -11.00861 -10.84130 -10.75745 -10.53342 -10.47996 -10.34474 -10.07993 -9.07556 -9.05064 -8.63667 -8.60104 -8.46759 -6.48209 -4.21033 0.63185 0.72949 1.38968 1.71336 2.39385 2.93931 3.38072 3.39970 3.59180 4.19873 4.22048 4.33718 4.46239 4.48473 4.72679 4.77886 4.87680 5.03171 5.11473 5.20737 5.25663 5.27409 5.33766 5.37426 5.46475 5.53364 5.60315 5.63405 5.67840 5.69668 5.87404 5.94761 6.11320 6.13817 6.19183 6.26672 6.34718 6.47029 6.95784 7.06015 7.95645 8.28993 8.71919 9.51366 10.91608 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002916 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.414532 B = 9600.594781 C =10056.175440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.149 3.851 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.042 4.042 6 H 0.096 0.904 7 C -0.088 4.088 8 C -0.127 4.127 9 C -0.213 4.213 10 S 0.090 5.910 11 C -0.206 4.206 12 C 0.132 3.868 13 N -1.014 6.014 14 S 2.603 3.397 15 O -0.960 6.960 16 O -0.963 6.963 17 C -0.584 4.584 18 C 0.015 3.985 19 C -0.600 4.600 20 H 0.055 0.945 21 C 0.016 3.984 22 N -0.905 5.905 23 Si 1.073 2.927 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.286 1.286 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -4.767 -23.496 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.042 3.958 3 H 0.099 0.901 4 C -0.152 4.152 5 C -0.064 4.064 6 H 0.115 0.885 7 C -0.101 4.101 8 C -0.157 4.157 9 C -0.348 4.348 10 S 0.354 5.646 11 C -0.342 4.342 12 C 0.006 3.994 13 N -0.850 5.850 14 S 2.702 3.298 15 O -0.951 6.951 16 O -0.953 6.953 17 C -0.717 4.717 18 C -0.024 4.024 19 C -0.639 4.639 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.540 5.540 23 Si 0.900 3.100 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.183 0.817 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.037 -4.407 -22.213 25.192 hybrid contribution -0.810 -0.254 -0.978 1.295 sum 10.227 -4.662 -23.190 25.770 Atomic orbital electron populations 1.22443 0.95085 1.02994 1.03509 1.21263 0.93948 0.96234 0.84306 0.90127 1.22802 1.01951 0.93825 0.96647 1.21128 0.96357 0.95846 0.93112 0.88528 1.18702 0.94787 0.95936 1.00710 1.20123 1.00131 0.96405 0.99043 1.25587 0.96548 1.04864 1.07842 1.84316 1.15499 1.16360 1.48459 1.25483 0.97294 1.05028 1.06376 1.22054 0.94696 0.88421 0.94226 1.58972 1.63210 1.40634 1.22221 1.05376 0.77520 0.75456 0.71408 1.93535 1.86931 1.29666 1.84973 1.93543 1.49900 1.81628 1.70242 1.30462 1.17951 1.13423 1.09881 1.19069 0.99001 0.98073 0.86242 1.21834 1.10363 1.30969 1.00736 0.92667 1.25978 1.03179 0.97116 0.92613 1.70783 1.20490 1.26606 1.36154 0.83485 0.74547 0.75489 0.76432 1.20532 1.21282 1.21275 0.91643 0.90766 0.91477 0.89783 0.90458 0.84091 0.81920 0.81728 0.91168 0.90417 0.86160 0.85955 0.95818 0.95847 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.67 37.16 0.32 -1.67 16 2 C 0.15 1.69 3.37 -66.95 -0.23 1.46 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.11 -0.96 5.91 -24.90 -0.15 -1.11 16 5 C -0.04 -0.38 3.35 -89.51 -0.30 -0.68 16 6 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 7 C -0.09 -0.77 4.89 -106.25 -0.52 -1.29 16 8 C -0.13 -1.01 9.95 -41.21 -0.41 -1.42 16 9 C -0.21 -1.58 11.23 29.04 0.33 -1.25 16 10 S 0.09 0.69 23.34 -107.50 -2.51 -1.81 16 11 C -0.21 -1.76 9.52 29.04 0.28 -1.48 16 12 C 0.13 1.54 6.31 -2.41 -0.02 1.52 16 13 N -1.01 -14.03 3.34 -104.29 -0.35 -14.38 16 14 S 2.60 48.29 5.13 -107.50 -0.55 47.74 16 15 O -0.96 -20.14 17.27 -57.54 -0.99 -21.13 16 16 O -0.96 -20.50 17.60 -57.54 -1.01 -21.52 16 17 C -0.58 -11.46 6.12 37.16 0.23 -11.23 16 18 C 0.02 0.39 4.29 -27.88 -0.12 0.27 16 19 C -0.60 -16.86 9.11 -34.44 -0.31 -17.18 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 22 N -0.91 -27.79 13.65 55.43 0.76 -27.03 16 23 Si 1.07 24.85 29.90 -169.99 -5.08 19.77 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.06 0.86 6.77 -51.93 -0.35 0.51 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.59 7.83 -51.93 -0.41 0.18 16 31 H 0.08 0.61 7.47 -51.93 -0.39 0.22 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.17 1.27 7.60 -52.48 -0.40 0.87 16 35 H 0.07 0.80 6.98 -51.93 -0.36 0.43 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 38 H 0.12 2.18 6.85 -51.92 -0.36 1.82 16 39 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 40 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 41 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -35.12 359.11 -11.30 -46.42 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.97 Total: 0.22 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: -1.00 Total: -33.69 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.41 Total: -41.41 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.01 Total: -42.64 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Atomic # 16 Polarization: 48.99 SS G_CDS: -3.06 Total: 45.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.12 -11.30 -46.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.433 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds