Wall clock time and date at job start Tue Mar 31 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47128 * 240.00316 * 3 2 1 5 5 H 1.48495 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46817 * 120.00694 * 3 2 1 7 7 C 1.37881 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46809 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.86980 * 270.28635 * 10 9 7 12 12 C 1.30249 * 109.69101 * 180.12038 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.63725 * 12 11 10 14 14 C 1.36308 * 125.87260 * 90.00139 * 10 9 7 15 15 N 1.33199 * 134.61923 * 0.07553 * 14 10 9 16 16 C 1.31510 * 120.68256 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64648 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81448 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99962 * 359.97323 * 19 18 17 21 21 C 1.52997 * 109.47004 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.46981 * 179.97438 * 21 20 19 23 23 C 1.33389 * 125.20230 * 90.00403 * 22 21 20 24 24 C 1.38421 * 114.92386 * 179.97438 * 23 22 21 25 25 C 1.33388 * 114.91989 * 359.97438 * 24 23 22 26 26 S 1.75886 * 125.20537 * 269.69720 * 22 21 20 27 27 H 0.97001 * 119.99480 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47701 * 60.00432 * 9 7 2 29 29 H 1.08996 * 109.47415 * 299.99946 * 9 7 2 30 30 H 1.08002 * 125.76682 * 179.90918 * 12 11 10 31 31 H 1.08001 * 118.67359 * 180.02562 * 16 15 14 32 32 H 0.97007 * 120.00145 * 179.97438 * 19 18 17 33 33 H 1.08999 * 109.47253 * 300.00618 * 20 19 18 34 34 H 1.09004 * 109.46630 * 60.00454 * 20 19 18 35 35 H 1.08999 * 109.47631 * 300.00399 * 21 20 19 36 36 H 1.09004 * 109.47046 * 60.00722 * 21 20 19 37 37 H 1.08005 * 122.53878 * 359.95470 * 23 22 21 38 38 H 1.07997 * 122.54472 * 180.02562 * 24 23 22 39 39 H 1.08000 * 125.20938 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2328 -1.1355 12 6 3.5501 -5.1865 -0.7726 13 6 3.5864 -5.2297 0.6379 14 6 2.7220 -4.2199 1.1040 15 7 2.5780 -4.0535 2.4177 16 6 3.2307 -4.8171 3.2664 17 7 4.0523 -5.7756 2.8765 18 6 4.2634 -6.0189 1.5876 19 7 5.1235 -7.0232 1.1888 20 6 5.8166 -7.8353 2.1920 21 6 6.7007 -8.8679 1.4900 22 6 7.4142 -9.7028 2.5220 23 6 6.9501 -10.8375 3.0478 24 6 7.7829 -11.4317 3.9802 25 6 8.9235 -10.7800 4.2112 26 16 8.9897 -9.3343 3.2116 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8896 30 1 4.1037 -5.8321 -1.4384 31 1 3.0895 -4.6542 4.3246 32 1 5.2686 -7.1909 0.2444 33 1 6.4355 -7.1910 2.8165 34 1 5.0831 -8.3483 2.8140 35 1 6.0814 -9.5121 0.8658 36 1 7.4342 -8.3552 0.8677 37 1 5.9966 -11.2603 2.7676 38 1 7.5288 -12.3536 4.4821 39 1 9.6910 -11.0940 4.9031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:29 Heat of formation + Delta-G solvation = 146.468328 kcal Electronic energy + Delta-G solvation = -23699.090448 eV Core-core repulsion = 20155.968115 eV Total energy + Delta-G solvation = -3543.122333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36961 -38.66876 -38.25064 -36.60341 -33.93199 -33.25450 -31.71792 -31.25854 -29.66102 -27.76633 -27.11659 -24.62286 -23.94551 -23.28851 -22.66343 -21.92230 -20.13605 -19.58904 -18.01483 -17.53228 -17.12807 -16.66225 -16.26481 -15.86851 -15.45306 -15.31160 -14.77201 -14.56509 -14.11883 -13.75703 -13.45998 -13.38948 -13.32702 -13.07013 -12.74559 -12.56020 -12.17566 -12.14214 -11.79472 -11.64114 -11.16122 -11.06516 -10.96276 -10.87412 -10.73554 -10.27623 -10.07872 -9.83994 -9.25601 -9.02196 -8.80777 -8.66622 -8.58109 -8.21502 -7.63390 -6.20708 -4.27196 0.63127 1.28089 1.31612 1.66157 1.95329 2.38832 2.93936 3.03931 3.13170 3.27299 3.30249 3.35321 4.32158 4.39227 4.41256 4.54668 4.64936 4.73365 4.75705 4.76474 5.00108 5.05698 5.14611 5.19766 5.22311 5.30987 5.51375 5.57053 5.71671 5.77083 5.80743 5.93771 6.13508 6.32405 6.68203 6.91064 7.04117 7.11580 7.23731 7.50640 7.73059 7.91485 7.93473 8.23826 8.72798 8.83939 9.37641 10.87457 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.002132 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.200979 B =13130.249496 C =13308.924365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.068 3.932 13 C -0.337 4.337 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.367 3.633 17 N -0.617 5.617 18 C 0.509 3.491 19 N -0.709 5.709 20 C 0.138 3.862 21 C -0.063 4.063 22 C -0.170 4.170 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.216 4.216 26 S 0.103 5.897 27 H 0.268 0.732 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.182 0.818 31 H 0.195 0.805 32 H 0.409 0.591 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.921 -23.059 5.822 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.059 5.059 12 C -0.127 4.127 13 C -0.355 4.355 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.073 3.927 17 N -0.348 5.348 18 C 0.257 3.743 19 N -0.343 5.343 20 C 0.013 3.987 21 C -0.103 4.103 22 C -0.288 4.288 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.352 4.352 26 S 0.366 5.634 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.199 0.801 31 H 0.211 0.789 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 16.010 -20.841 5.627 26.877 hybrid contribution -0.013 -0.805 -0.228 0.837 sum 15.997 -21.646 5.399 27.452 Atomic orbital electron populations 1.69910 1.05994 1.27727 1.49274 1.24901 0.94993 0.99354 0.94454 0.86400 0.79440 0.81868 0.78867 1.20028 1.20890 1.19960 1.21205 0.93499 0.89693 1.52827 0.92121 1.19791 0.85680 0.79841 0.99987 1.49461 1.35729 1.27865 0.98785 1.76938 1.11469 1.08089 1.09400 1.23363 0.99197 0.97852 0.92303 1.19611 1.12580 1.07990 0.95329 1.18942 0.91090 0.89952 0.88534 1.67520 1.29565 1.30776 0.99999 1.24415 0.85142 0.83967 0.99190 1.67949 1.26639 1.25679 1.14545 1.17868 0.84163 0.84078 0.88232 1.44247 1.46463 1.34494 1.09071 1.21271 0.94948 0.91799 0.90652 1.20336 0.98183 0.96481 0.95281 1.24228 0.98956 1.00657 1.04933 1.20168 1.01686 0.95867 0.98890 1.20179 0.94278 1.01893 1.00095 1.25647 1.03156 0.99768 1.06592 1.84430 1.16844 1.24974 1.37150 0.92214 0.92806 0.92246 0.80083 0.78859 0.75453 0.91189 0.91001 0.89189 0.90003 0.84176 0.84300 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.32 9.39 -34.44 -0.32 -15.64 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.26 7.08 6.19 -5.19 -0.03 7.05 16 10 N -0.33 -7.98 3.63 -61.64 -0.22 -8.20 16 11 N -0.24 -5.20 12.45 30.80 0.38 -4.82 16 12 C 0.07 1.14 11.87 -17.11 -0.20 0.93 16 13 C -0.34 -6.10 6.14 -106.82 -0.66 -6.75 16 14 C 0.36 8.05 8.04 -156.24 -1.26 6.79 16 15 N -0.55 -11.77 10.47 -13.97 -0.15 -11.92 16 16 C 0.37 6.23 12.24 -92.11 -1.13 5.10 16 17 N -0.62 -9.92 9.69 -13.62 -0.13 -10.05 16 18 C 0.51 7.82 7.55 -154.85 -1.17 6.65 16 19 N -0.71 -7.53 5.68 -60.08 -0.34 -7.87 16 20 C 0.14 1.25 5.71 -4.04 -0.02 1.22 16 21 C -0.06 -0.41 5.82 -27.88 -0.16 -0.57 16 22 C -0.17 -1.28 5.76 -36.00 -0.21 -1.48 16 23 C -0.14 -0.98 10.05 -41.21 -0.41 -1.39 16 24 C -0.13 -0.91 10.18 -41.21 -0.42 -1.33 16 25 C -0.22 -1.46 11.23 29.04 0.33 -1.14 16 26 S 0.10 0.77 23.33 -107.50 -2.51 -1.74 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.41 3.29 8.34 -40.82 -0.34 2.95 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -33.68 358.64 -12.15 -45.83 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.54 Total: 0.50 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -5.77 Total: 1.21 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 0.28 Total: -67.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.68 -12.15 -45.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.294 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds