Wall clock time and date at job start Tue Mar 31 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47128 * 240.00316 * 3 2 1 5 5 H 1.48495 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46817 * 120.00694 * 3 2 1 7 7 C 1.37881 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46809 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.86980 * 270.28635 * 10 9 7 12 12 C 1.30249 * 109.69101 * 180.12038 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.63725 * 12 11 10 14 14 C 1.36308 * 125.87260 * 90.00139 * 10 9 7 15 15 N 1.33199 * 134.61923 * 0.07553 * 14 10 9 16 16 C 1.31510 * 120.68256 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64648 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81448 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99962 * 359.97323 * 19 18 17 21 21 C 1.52997 * 109.47004 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.46981 * 179.97438 * 21 20 19 23 23 C 1.33389 * 125.20230 * 90.00403 * 22 21 20 24 24 C 1.38421 * 114.92386 * 179.97438 * 23 22 21 25 25 C 1.33388 * 114.91989 * 359.97438 * 24 23 22 26 26 S 1.75886 * 125.20537 * 269.69720 * 22 21 20 27 27 H 0.97001 * 119.99480 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47701 * 60.00432 * 9 7 2 29 29 H 1.08996 * 109.47415 * 299.99946 * 9 7 2 30 30 H 1.08002 * 125.76682 * 179.90918 * 12 11 10 31 31 H 1.08001 * 118.67359 * 180.02562 * 16 15 14 32 32 H 0.97007 * 120.00145 * 179.97438 * 19 18 17 33 33 H 1.08999 * 109.47253 * 300.00618 * 20 19 18 34 34 H 1.09004 * 109.46630 * 60.00454 * 20 19 18 35 35 H 1.08999 * 109.47631 * 300.00399 * 21 20 19 36 36 H 1.09004 * 109.47046 * 60.00722 * 21 20 19 37 37 H 1.08005 * 122.53878 * 359.95470 * 23 22 21 38 38 H 1.07997 * 122.54472 * 180.02562 * 24 23 22 39 39 H 1.08000 * 125.20938 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2328 -1.1355 12 6 3.5501 -5.1865 -0.7726 13 6 3.5864 -5.2297 0.6379 14 6 2.7220 -4.2199 1.1040 15 7 2.5780 -4.0535 2.4177 16 6 3.2307 -4.8171 3.2664 17 7 4.0523 -5.7756 2.8765 18 6 4.2634 -6.0189 1.5876 19 7 5.1235 -7.0232 1.1888 20 6 5.8166 -7.8353 2.1920 21 6 6.7007 -8.8679 1.4900 22 6 7.4142 -9.7028 2.5220 23 6 6.9501 -10.8375 3.0478 24 6 7.7829 -11.4317 3.9802 25 6 8.9235 -10.7800 4.2112 26 16 8.9897 -9.3343 3.2116 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8896 30 1 4.1037 -5.8321 -1.4384 31 1 3.0895 -4.6542 4.3246 32 1 5.2686 -7.1909 0.2444 33 1 6.4355 -7.1910 2.8165 34 1 5.0831 -8.3483 2.8140 35 1 6.0814 -9.5121 0.8658 36 1 7.4342 -8.3552 0.8677 37 1 5.9966 -11.2603 2.7676 38 1 7.5288 -12.3536 4.4821 39 1 9.6910 -11.0940 4.9031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:28 Heat of formation + Delta-G solvation = 126.744110 kcal Electronic energy + Delta-G solvation = -23699.945754 eV Core-core repulsion = 20155.968115 eV Total energy + Delta-G solvation = -3543.977639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.80916 -39.90983 -38.94554 -37.61488 -35.76395 -34.48921 -33.21568 -32.66886 -30.84933 -29.22993 -28.34150 -25.71451 -25.30720 -24.82634 -23.69149 -22.90361 -21.58083 -20.11779 -19.37690 -18.82522 -18.68496 -18.02384 -17.44153 -16.82963 -16.73674 -16.38983 -16.12868 -15.79318 -15.32792 -15.08428 -14.93563 -14.76642 -14.03508 -14.00881 -13.72425 -13.64784 -13.48153 -13.14144 -13.04176 -12.81220 -12.72725 -12.63532 -12.36375 -12.29233 -12.02690 -11.77021 -11.54611 -11.50517 -10.75731 -10.60828 -10.07410 -9.76505 -9.54308 -9.35465 -8.99133 -8.35250 -6.52271 -0.03522 0.10808 0.53197 0.76532 1.14871 1.32800 1.37528 1.39648 1.48761 1.64665 1.85323 2.07386 2.31811 2.94296 3.01528 3.27887 3.40101 3.66207 3.73171 3.97686 4.04803 4.11414 4.13746 4.31228 4.44620 4.53921 4.73530 4.78053 4.83518 4.87293 4.95827 5.01027 5.18765 5.28954 5.43710 5.47613 5.55858 5.64528 5.75208 5.78254 5.95634 6.12444 6.52995 6.59420 6.80511 7.17006 7.45974 8.72143 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.002132 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.200979 B =13130.249496 C =13308.924365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.018 3.982 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.285 3.715 10 N -0.366 5.366 11 N -0.291 5.291 12 C 0.102 3.898 13 C -0.344 4.344 14 C 0.334 3.666 15 N -0.605 5.605 16 C 0.376 3.624 17 N -0.617 5.617 18 C 0.517 3.483 19 N -0.682 5.682 20 C 0.140 3.860 21 C -0.053 4.053 22 C -0.180 4.180 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.218 4.218 26 S 0.077 5.923 27 H 0.274 0.726 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.242 0.758 31 H 0.229 0.771 32 H 0.425 0.575 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.224 -24.926 5.951 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.153 5.153 11 N -0.106 5.106 12 C -0.093 4.093 13 C -0.362 4.362 14 C 0.088 3.912 15 N -0.332 5.332 16 C 0.083 3.917 17 N -0.348 5.348 18 C 0.263 3.737 19 N -0.315 5.315 20 C 0.016 3.984 21 C -0.093 4.093 22 C -0.298 4.298 23 C -0.171 4.171 24 C -0.174 4.174 25 C -0.354 4.354 26 S 0.340 5.660 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.258 0.742 31 H 0.245 0.755 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 18.364 -22.784 5.735 29.820 hybrid contribution -0.597 -0.492 -0.143 0.787 sum 17.766 -23.276 5.593 29.811 Atomic orbital electron populations 1.70009 1.07369 1.28952 1.49388 1.25814 0.95940 1.02891 0.93595 0.85358 0.78329 0.77510 0.78971 1.19311 1.19340 1.19672 1.21352 0.92855 0.91183 1.53636 0.93624 1.19111 0.85962 0.80913 0.97427 1.49093 1.37134 1.28626 1.00433 1.76891 1.14132 1.10452 1.09086 1.24308 0.96513 0.95923 0.92564 1.19736 1.12543 1.07710 0.96215 1.19382 0.92022 0.91022 0.88801 1.67529 1.32084 1.33262 1.00348 1.25149 0.83615 0.82791 1.00130 1.68103 1.26557 1.25431 1.14700 1.17987 0.83980 0.84280 0.87502 1.44331 1.44164 1.32420 1.10583 1.21339 0.94826 0.91815 0.90376 1.20275 0.98060 0.95917 0.95013 1.24340 0.98873 1.01082 1.05501 1.20442 1.02223 0.95778 0.98656 1.20467 0.94196 1.02588 1.00142 1.25925 1.03723 0.99180 1.06552 1.84509 1.17612 1.25965 1.37927 0.91694 0.95067 0.95014 0.74170 0.75499 0.73512 0.92277 0.91380 0.87250 0.89015 0.82878 0.82584 0.80313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.29 21.45 0.28 -54.66 16 2 C 0.02 1.06 5.46 84.66 0.46 1.53 16 3 Si 0.98 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.55 -33.13 9.39 25.60 0.24 -32.89 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.28 16.33 6.19 85.63 0.53 16.86 16 10 N -0.37 -18.44 3.63 -348.94 -1.27 -19.70 16 11 N -0.29 -12.60 12.45 -56.46 -0.70 -13.30 16 12 C 0.10 3.22 11.87 85.65 1.02 4.23 16 13 C -0.34 -12.04 6.14 -21.29 -0.13 -12.18 16 14 C 0.33 15.22 8.04 134.15 1.08 16.30 16 15 N -0.60 -26.39 10.47 -198.11 -2.07 -28.46 16 16 C 0.38 12.53 12.24 180.87 2.21 14.74 16 17 N -0.62 -18.73 9.69 -197.01 -1.91 -20.64 16 18 C 0.52 14.70 7.55 133.65 1.01 15.71 16 19 N -0.68 -12.05 5.68 -344.00 -1.95 -14.00 16 20 C 0.14 2.10 5.71 86.38 0.49 2.60 16 21 C -0.05 -0.51 5.82 29.85 0.17 -0.34 16 22 C -0.18 -2.25 5.76 24.59 0.14 -2.11 16 23 C -0.14 -1.66 10.05 21.22 0.21 -1.45 16 24 C -0.14 -1.62 10.18 21.22 0.22 -1.40 16 25 C -0.22 -2.53 11.23 66.72 0.75 -1.78 16 26 S 0.08 1.03 23.33 -56.49 -1.32 -0.29 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.24 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.23 5.57 8.06 -2.91 -0.02 5.55 16 32 H 0.43 4.85 8.34 -92.70 -0.77 4.08 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -77.78 358.64 1.82 -75.96 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.32 Total: 7.96 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 8.41 Total: 19.82 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -7.62 Total: -150.77 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -1.32 Total: -0.29 kcal Total: -77.78 1.82 -75.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.705 kcal (2) G-P(sol) polarization free energy of solvation -77.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds