Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 C 1.38420 * 122.54453 * 269.73627 * 4 3 2 6 6 C 1.33386 * 114.92502 * 179.76753 * 5 4 3 7 7 S 1.75887 * 109.59069 * 0.47390 * 6 5 4 8 8 C 1.33394 * 122.53823 * 90.02813 * 4 3 2 9 9 C 1.38104 * 110.99934 * 236.04808 * 2 1 3 10 10 N 1.32857 * 120.81663 * 123.67378 * 9 2 1 11 11 C 1.32127 * 121.19742 * 179.69995 * 10 9 2 12 12 N 1.31510 * 122.64390 * 0.62783 * 11 10 9 13 13 C 1.33203 * 120.68005 * 359.67881 * 12 11 10 14 14 C 1.40821 * 120.81055 * 303.95376 * 9 2 1 15 15 C 1.41166 * 134.70301 * 0.02562 * 14 9 2 16 16 N 1.30253 * 108.46945 * 179.97438 * 15 14 9 17 17 N 1.36308 * 134.61292 * 179.97438 * 13 12 11 18 18 C 1.46503 * 125.87322 * 0.02562 * 17 13 12 19 19 C 1.50699 * 109.47340 * 89.99446 * 18 17 13 20 20 H 1.07999 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99973 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00039 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99796 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47275 * 90.00135 * 23 21 19 25 25 H 1.48506 * 109.47279 * 209.99724 * 23 21 19 26 26 H 1.48498 * 109.47506 * 329.99770 * 23 21 19 27 27 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 28 28 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 29 29 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 30 30 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 31 31 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 32 32 H 1.08004 * 122.53419 * 359.97438 * 5 4 3 33 33 H 1.08003 * 125.20599 * 180.21187 * 6 5 4 34 34 H 1.08001 * 125.20234 * 0.02562 * 8 4 3 35 35 H 1.07997 * 118.68175 * 180.28626 * 11 10 9 36 36 H 1.07996 * 125.76401 * 359.95874 * 15 14 9 37 37 H 1.09000 * 109.47272 * 209.99721 * 18 17 13 38 38 H 1.09006 * 109.47261 * 329.99491 * 18 17 13 39 39 H 0.97002 * 119.99998 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4668 2.7676 1.4646 6 6 0.3004 3.2977 2.6772 7 16 1.6819 2.8984 3.6900 8 6 2.4259 2.0010 2.3730 9 6 1.9640 -0.7201 -1.0695 10 7 2.7985 -0.1607 -1.9388 11 6 3.2811 -0.8443 -2.9614 12 7 2.9626 -2.0998 -3.1890 13 6 2.1283 -2.7472 -2.3772 14 6 1.5918 -2.0635 -1.2686 15 6 0.7522 -2.9725 -0.5891 16 7 0.7742 -4.1090 -1.2250 17 7 1.6157 -4.0097 -2.3402 18 6 1.8973 -5.0791 -3.3011 19 6 3.0938 -5.8691 -2.8371 20 1 3.5942 -5.6017 -1.9182 21 6 3.5491 -6.9340 -3.5853 22 7 4.5930 -7.6238 -3.1802 23 14 2.6831 -7.3971 -5.1744 24 1 3.2984 -6.6590 -6.3067 25 1 2.8181 -8.8580 -5.4042 26 1 1.2445 -7.0424 -5.0757 27 1 -0.3634 -1.0251 0.0708 28 1 -0.3633 0.5740 0.8525 29 1 -0.3633 0.4513 -0.9233 30 1 3.0798 1.3444 -0.1083 31 1 1.5612 1.9274 -0.8310 32 1 -0.2583 2.8884 0.6733 33 1 -0.5503 3.8859 2.9883 34 1 3.3764 1.4909 2.4261 35 1 3.9603 -0.3506 -3.6406 36 1 0.1874 -2.7613 0.3068 37 1 1.0326 -5.7387 -3.3744 38 1 2.1060 -4.6438 -4.2784 39 1 4.9135 -8.3727 -3.7067 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = 176.023923 kcal Electronic energy + Delta-G solvation = -24662.901930 eV Core-core repulsion = 21121.061223 eV Total energy + Delta-G solvation = -3541.840706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 14.57 seconds Orbital eigenvalues (eV) -41.72108 -39.52165 -38.35602 -36.76070 -33.83012 -32.50907 -31.67996 -30.73947 -29.70810 -28.08390 -27.26073 -26.11924 -23.64203 -23.45173 -22.65984 -21.84114 -20.03216 -19.05576 -18.03464 -17.48699 -17.43035 -17.15148 -16.46727 -15.76482 -15.44109 -14.84727 -14.66711 -14.42805 -14.23353 -13.96149 -13.61992 -13.22796 -13.08927 -13.00438 -12.75876 -12.50126 -12.44302 -12.22935 -11.87526 -11.70508 -11.27752 -11.17173 -11.06746 -10.87085 -10.76338 -10.28126 -10.26623 -9.71795 -9.39611 -9.09802 -8.91086 -8.76583 -8.64453 -8.41737 -7.95022 -6.24979 -4.28111 0.75549 0.95530 1.40881 1.66547 1.73123 2.32793 2.76304 2.88318 3.18571 3.24020 3.26275 3.48719 4.13021 4.23352 4.34546 4.54351 4.64138 4.72744 4.87941 4.91215 5.00932 5.05673 5.11441 5.21300 5.22603 5.35836 5.40955 5.50670 5.65266 5.67881 5.77082 6.10439 6.16897 6.17536 6.39587 6.44823 6.45622 6.79000 7.00218 7.15973 7.27472 7.56714 7.99611 8.26929 8.55568 8.76864 9.29339 10.87709 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.028089 B = 0.002537 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.575113 B =11035.176424 C =11147.087089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.467 5.467 3 C 0.124 3.876 4 C -0.106 4.106 5 C -0.127 4.127 6 C -0.215 4.215 7 S 0.091 5.909 8 C -0.183 4.183 9 C 0.433 3.567 10 N -0.598 5.598 11 C 0.353 3.647 12 N -0.535 5.535 13 C 0.355 3.645 14 C -0.295 4.295 15 C 0.075 3.925 16 N -0.233 5.233 17 N -0.331 5.331 18 C 0.236 3.764 19 C -0.540 4.540 20 H 0.078 0.922 21 C 0.080 3.920 22 N -0.886 5.886 23 Si 0.875 3.125 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.198 0.802 36 H 0.191 0.809 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 23.091 9.225 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.183 5.183 3 C -0.005 4.005 4 C -0.118 4.118 5 C -0.158 4.158 6 C -0.350 4.350 7 S 0.354 5.646 8 C -0.319 4.319 9 C 0.184 3.816 10 N -0.323 5.323 11 C 0.059 3.941 12 N -0.258 5.258 13 C 0.107 3.893 14 C -0.311 4.311 15 C -0.121 4.121 16 N -0.048 5.048 17 N -0.118 5.118 18 C 0.118 3.882 19 C -0.578 4.578 20 H 0.096 0.904 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.700 3.300 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.189 1.189 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.215 0.785 36 H 0.207 0.793 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.611 21.972 10.334 25.763 hybrid contribution -0.937 -0.062 -2.183 2.376 sum -9.548 21.910 8.151 25.252 Atomic orbital electron populations 1.22682 0.83236 1.04274 1.02053 1.58612 1.09576 1.14656 1.35500 1.20681 1.02220 0.85082 0.92470 1.18842 0.95189 1.01167 0.96628 1.20113 0.98243 0.99807 0.97658 1.25558 1.03312 1.08523 0.97652 1.84340 1.14013 1.50053 1.16167 1.25563 1.05006 1.05588 0.95779 1.19424 0.88565 0.88238 0.85420 1.68340 1.18376 1.38901 1.06713 1.24533 0.93022 0.85330 0.91217 1.67523 1.16336 1.10068 1.31830 1.18988 0.91684 0.87617 0.91050 1.19634 1.11386 0.96596 1.03480 1.23608 0.99022 0.89411 1.00041 1.76987 1.10176 1.21070 0.96545 1.49011 1.33901 1.07652 1.21193 1.20117 0.98596 0.83847 0.85625 1.21096 1.11921 1.13931 1.10868 0.90364 1.24770 0.94644 0.95313 0.97664 1.69868 1.23765 1.19779 1.38915 0.86877 0.80573 0.78568 0.83944 1.19488 1.20467 1.18858 0.89761 0.89487 0.93976 0.88085 0.91886 0.84347 0.81952 0.81645 0.78540 0.79254 0.92923 0.93066 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.00 60.07 0.54 0.76 16 2 N -0.47 -5.58 4.77 -182.03 -0.87 -6.45 16 3 C 0.12 1.28 4.50 -4.98 -0.02 1.25 16 4 C -0.11 -0.96 4.75 -106.25 -0.50 -1.46 16 5 C -0.13 -0.98 8.32 -41.21 -0.34 -1.32 16 6 C -0.22 -1.53 11.23 29.04 0.33 -1.20 16 7 S 0.09 0.70 23.34 -107.50 -2.51 -1.81 16 8 C -0.18 -1.63 10.98 29.04 0.32 -1.32 16 9 C 0.43 6.61 6.42 -154.86 -0.99 5.61 16 10 N -0.60 -9.08 8.76 -13.62 -0.12 -9.20 16 11 C 0.35 5.64 12.24 -92.11 -1.13 4.52 16 12 N -0.54 -10.84 10.47 -13.97 -0.15 -10.99 16 13 C 0.36 7.58 8.04 -156.23 -1.26 6.32 16 14 C -0.29 -5.26 5.76 -106.81 -0.61 -5.87 16 15 C 0.07 1.25 10.79 -17.11 -0.18 1.07 16 16 N -0.23 -4.84 12.45 30.80 0.38 -4.45 16 17 N -0.33 -7.65 3.63 -61.64 -0.22 -7.88 16 18 C 0.24 5.86 5.26 -5.19 -0.03 5.83 16 19 C -0.54 -15.59 9.94 -34.44 -0.34 -15.93 16 20 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 22 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 23 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 27 H 0.08 0.79 5.15 -51.93 -0.27 0.52 16 28 H 0.09 0.68 6.00 -51.93 -0.31 0.37 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 1.14 7.53 -51.93 -0.39 0.75 16 31 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 32 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.20 2.33 8.06 -52.49 -0.42 1.90 16 36 H 0.19 2.31 6.78 -52.49 -0.36 1.95 16 37 H 0.05 1.27 7.20 -51.93 -0.37 0.89 16 38 H 0.05 1.24 7.57 -51.93 -0.39 0.85 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -33.47 343.37 -10.75 -44.22 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.22 Total: 1.02 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -4.33 Total: 0.46 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.20 Total: -65.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.47 -10.75 -44.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.249 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.57 seconds