Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 C 1.38420 * 122.54453 * 269.73627 * 4 3 2 6 6 C 1.33386 * 114.92502 * 179.76753 * 5 4 3 7 7 S 1.75887 * 109.59069 * 0.47390 * 6 5 4 8 8 C 1.33394 * 122.53823 * 90.02813 * 4 3 2 9 9 C 1.38104 * 110.99934 * 236.04808 * 2 1 3 10 10 N 1.32857 * 120.81663 * 123.67378 * 9 2 1 11 11 C 1.32127 * 121.19742 * 179.69995 * 10 9 2 12 12 N 1.31510 * 122.64390 * 0.62783 * 11 10 9 13 13 C 1.33203 * 120.68005 * 359.67881 * 12 11 10 14 14 C 1.40821 * 120.81055 * 303.95376 * 9 2 1 15 15 C 1.41166 * 134.70301 * 0.02562 * 14 9 2 16 16 N 1.30253 * 108.46945 * 179.97438 * 15 14 9 17 17 N 1.36308 * 134.61292 * 179.97438 * 13 12 11 18 18 C 1.46503 * 125.87322 * 0.02562 * 17 13 12 19 19 C 1.50699 * 109.47340 * 89.99446 * 18 17 13 20 20 H 1.07999 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99973 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00039 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99796 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47275 * 90.00135 * 23 21 19 25 25 H 1.48506 * 109.47279 * 209.99724 * 23 21 19 26 26 H 1.48498 * 109.47506 * 329.99770 * 23 21 19 27 27 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 28 28 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 29 29 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 30 30 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 31 31 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 32 32 H 1.08004 * 122.53419 * 359.97438 * 5 4 3 33 33 H 1.08003 * 125.20599 * 180.21187 * 6 5 4 34 34 H 1.08001 * 125.20234 * 0.02562 * 8 4 3 35 35 H 1.07997 * 118.68175 * 180.28626 * 11 10 9 36 36 H 1.07996 * 125.76401 * 359.95874 * 15 14 9 37 37 H 1.09000 * 109.47272 * 209.99721 * 18 17 13 38 38 H 1.09006 * 109.47261 * 329.99491 * 18 17 13 39 39 H 0.97002 * 119.99998 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4668 2.7676 1.4646 6 6 0.3004 3.2977 2.6772 7 16 1.6819 2.8984 3.6900 8 6 2.4259 2.0010 2.3730 9 6 1.9640 -0.7201 -1.0695 10 7 2.7985 -0.1607 -1.9388 11 6 3.2811 -0.8443 -2.9614 12 7 2.9626 -2.0998 -3.1890 13 6 2.1283 -2.7472 -2.3772 14 6 1.5918 -2.0635 -1.2686 15 6 0.7522 -2.9725 -0.5891 16 7 0.7742 -4.1090 -1.2250 17 7 1.6157 -4.0097 -2.3402 18 6 1.8973 -5.0791 -3.3011 19 6 3.0938 -5.8691 -2.8371 20 1 3.5942 -5.6017 -1.9182 21 6 3.5491 -6.9340 -3.5853 22 7 4.5930 -7.6238 -3.1802 23 14 2.6831 -7.3971 -5.1744 24 1 3.2984 -6.6590 -6.3067 25 1 2.8181 -8.8580 -5.4042 26 1 1.2445 -7.0424 -5.0757 27 1 -0.3634 -1.0251 0.0708 28 1 -0.3633 0.5740 0.8525 29 1 -0.3633 0.4513 -0.9233 30 1 3.0798 1.3444 -0.1083 31 1 1.5612 1.9274 -0.8310 32 1 -0.2583 2.8884 0.6733 33 1 -0.5503 3.8859 2.9883 34 1 3.3764 1.4909 2.4261 35 1 3.9603 -0.3506 -3.6406 36 1 0.1874 -2.7613 0.3068 37 1 1.0326 -5.7387 -3.3744 38 1 2.1060 -4.6438 -4.2784 39 1 4.9135 -8.3727 -3.7067 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = 155.042255 kcal Electronic energy + Delta-G solvation = -24663.811763 eV Core-core repulsion = 21121.061223 eV Total energy + Delta-G solvation = -3542.750540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -43.08617 -40.58002 -39.43823 -37.71195 -35.73273 -34.08142 -33.30929 -31.71856 -30.76775 -29.75792 -28.22547 -27.10936 -25.23521 -24.61410 -24.04597 -22.86094 -21.47809 -19.76905 -19.30785 -19.08003 -18.77735 -18.31881 -17.75439 -16.96758 -16.63973 -16.09734 -15.94298 -15.72275 -15.46698 -15.18311 -14.98352 -14.54123 -14.26879 -13.99393 -13.84319 -13.73388 -13.55019 -13.24196 -13.04942 -12.80407 -12.66334 -12.55690 -12.37891 -12.32548 -11.99506 -11.87343 -11.66788 -11.61406 -10.93617 -10.62706 -10.28878 -9.84393 -9.66289 -9.39478 -9.23647 -8.45008 -6.55969 -0.33218 0.14433 0.27452 0.80941 1.13895 1.21229 1.32399 1.35689 1.44544 1.49878 1.66052 2.23246 2.46989 2.79990 2.86686 3.11818 3.23383 3.60648 3.67932 3.93302 3.97800 4.05421 4.25284 4.29159 4.40123 4.46293 4.48404 4.63568 4.66271 4.75292 4.83920 4.91943 5.05650 5.17057 5.17455 5.30125 5.39403 5.54302 5.59346 5.67760 5.88296 6.03374 6.22450 6.43233 6.53966 7.06574 7.22187 8.72148 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.028089 B = 0.002537 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.575113 B =11035.176424 C =11147.087089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.466 5.466 3 C 0.128 3.872 4 C -0.110 4.110 5 C -0.136 4.136 6 C -0.209 4.209 7 S 0.096 5.904 8 C -0.201 4.201 9 C 0.446 3.554 10 N -0.593 5.593 11 C 0.362 3.638 12 N -0.581 5.581 13 C 0.330 3.670 14 C -0.307 4.307 15 C 0.103 3.897 16 N -0.275 5.275 17 N -0.364 5.364 18 C 0.250 3.750 19 C -0.551 4.551 20 H 0.019 0.981 21 C 0.021 3.979 22 N -0.937 5.937 23 Si 0.954 3.046 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.242 1.242 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.235 0.765 36 H 0.236 0.764 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 25.555 9.182 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.181 5.181 3 C 0.000 4.000 4 C -0.123 4.123 5 C -0.166 4.166 6 C -0.344 4.344 7 S 0.359 5.641 8 C -0.338 4.338 9 C 0.195 3.805 10 N -0.319 5.319 11 C 0.070 3.930 12 N -0.305 5.305 13 C 0.083 3.917 14 C -0.323 4.323 15 C -0.092 4.092 16 N -0.090 5.090 17 N -0.150 5.150 18 C 0.131 3.869 19 C -0.589 4.589 20 H 0.038 0.962 21 C -0.179 4.179 22 N -0.575 5.575 23 Si 0.774 3.226 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.165 1.165 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.174 0.826 33 H 0.204 0.796 34 H 0.181 0.819 35 H 0.251 0.749 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.890 24.495 10.340 28.732 hybrid contribution -0.154 -0.566 -1.919 2.007 sum -11.044 23.929 8.421 27.667 Atomic orbital electron populations 1.22824 0.81093 1.04977 1.03454 1.58631 1.11164 1.15380 1.32964 1.20658 1.01466 0.84125 0.93709 1.18809 0.95992 1.01618 0.95839 1.20244 0.98083 0.99784 0.98454 1.25889 1.03433 1.07956 0.97140 1.84366 1.14345 1.49568 1.15776 1.25685 1.05303 1.06230 0.96578 1.19684 0.87617 0.87710 0.85477 1.68510 1.18495 1.38243 1.06604 1.25350 0.92051 0.84192 0.91455 1.67549 1.17909 1.11853 1.33198 1.19404 0.92288 0.87535 0.92521 1.19789 1.11948 0.97642 1.02911 1.24342 0.97248 0.87747 0.99872 1.76932 1.11703 1.23197 0.97146 1.48789 1.35966 1.08014 1.22277 1.19700 0.96661 0.84266 0.86317 1.21206 1.13459 1.15187 1.09057 0.96239 1.25849 0.95269 0.94759 1.02020 1.70028 1.25773 1.20674 1.41062 0.85643 0.80304 0.78497 0.78151 1.18263 1.19592 1.16483 0.89563 0.87382 0.93141 0.89383 0.91026 0.82585 0.79597 0.81946 0.74870 0.74770 0.92281 0.92669 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.00 127.69 1.15 1.48 16 2 N -0.47 -10.01 4.77 -729.81 -3.48 -13.50 16 3 C 0.13 2.36 4.50 85.55 0.39 2.74 16 4 C -0.11 -1.72 4.75 -20.92 -0.10 -1.82 16 5 C -0.14 -1.63 8.32 21.21 0.18 -1.46 16 6 C -0.21 -2.27 11.23 66.72 0.75 -1.52 16 7 S 0.10 1.28 23.34 -56.49 -1.32 -0.04 16 8 C -0.20 -3.28 10.98 66.72 0.73 -2.55 16 9 C 0.45 12.91 6.42 133.65 0.86 13.77 16 10 N -0.59 -17.15 8.76 -197.01 -1.73 -18.88 16 11 C 0.36 11.27 12.24 180.87 2.21 13.48 16 12 N -0.58 -23.83 10.47 -198.10 -2.07 -25.90 16 13 C 0.33 14.35 8.04 134.15 1.08 15.43 16 14 C -0.31 -10.76 5.76 -21.29 -0.12 -10.88 16 15 C 0.10 3.36 10.79 85.65 0.92 4.29 16 16 N -0.28 -11.62 12.45 -56.46 -0.70 -12.32 16 17 N -0.36 -17.33 3.63 -348.93 -1.27 -18.60 16 18 C 0.25 12.76 5.26 85.63 0.45 13.21 16 19 C -0.55 -33.46 9.94 25.60 0.25 -33.21 16 20 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 21 C 0.02 1.22 5.47 84.66 0.46 1.68 16 22 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 23 Si 0.95 43.06 27.47 68.60 1.88 44.95 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 27 H 0.09 1.32 5.15 -2.39 -0.01 1.30 16 28 H 0.11 1.26 6.00 -2.38 -0.01 1.25 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.86 7.53 -2.39 -0.02 1.84 16 31 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 32 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 33 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.24 5.10 8.06 -2.91 -0.02 5.08 16 36 H 0.24 5.04 6.78 -2.91 -0.02 5.02 16 37 H 0.06 2.87 7.20 -2.39 -0.02 2.86 16 38 H 0.06 2.72 7.57 -2.38 -0.02 2.70 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -77.81 343.37 1.86 -75.95 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.04 Total: 12.52 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 9.21 Total: 14.64 kcal Atomic # 7 Polarization: -139.07 SS G_CDS: -8.95 Total: -148.02 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.32 Total: -0.04 kcal Total: -77.81 1.86 -75.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.994 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds