Wall clock time and date at job start Tue Mar 31 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30171 * 126.80167 * 2 1 4 4 O 1.20924 * 111.60471 * 179.97438 * 3 2 1 5 5 C 1.34040 * 111.56408 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.77574 * 179.97438 * 5 4 3 7 7 C 1.35448 * 106.44847 * 359.97438 * 5 4 3 8 8 S 1.76203 * 128.00862 * 180.02562 * 7 5 4 9 9 O 1.42093 * 106.40281 * 203.54045 * 8 7 5 10 10 O 1.42099 * 106.40032 * 336.45936 * 8 7 5 11 11 N 1.65596 * 107.21907 * 89.99842 * 8 7 5 12 12 C 1.46494 * 120.00183 * 64.99838 * 11 8 7 13 13 C 1.53036 * 109.46348 * 265.02908 * 12 11 8 14 14 C 1.53189 * 109.31356 * 178.59973 * 13 12 11 15 15 N 1.46929 * 108.76787 * 54.65573 * 14 13 12 16 16 C 1.36941 * 120.63056 * 126.40225 * 15 14 13 17 17 H 1.07997 * 120.00033 * 331.82425 * 16 15 14 18 18 C 1.38811 * 119.99629 * 151.82767 * 16 15 14 19 19 N 1.31624 * 120.00205 * 343.07668 * 18 16 15 20 20 Si 1.86803 * 119.99865 * 163.08050 * 18 16 15 21 21 H 1.48503 * 109.47088 * 59.99695 * 20 18 16 22 22 H 1.48506 * 109.47124 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47265 * 299.99934 * 20 18 16 24 24 C 1.46919 * 118.73738 * 306.38625 * 15 14 13 25 25 C 1.53045 * 109.46057 * 144.97353 * 12 11 8 26 26 H 1.09000 * 109.46769 * 90.02014 * 1 2 3 27 27 H 1.08993 * 109.47493 * 210.02284 * 1 2 3 28 28 H 1.08999 * 109.47020 * 330.02545 * 1 2 3 29 29 H 1.08994 * 109.46875 * 0.03230 * 6 5 4 30 30 H 1.08998 * 109.46600 * 120.02240 * 6 5 4 31 31 H 1.08993 * 109.47240 * 240.02252 * 6 5 4 32 32 H 0.97005 * 119.99810 * 245.00116 * 11 8 7 33 33 H 1.08999 * 109.45882 * 25.00561 * 12 11 8 34 34 H 1.09001 * 109.50052 * 298.56256 * 13 12 11 35 35 H 1.09005 * 109.49876 * 58.65977 * 13 12 11 36 36 H 1.08996 * 109.60106 * 294.86852 * 14 13 12 37 37 H 1.09010 * 109.70326 * 174.50534 * 14 13 12 38 38 H 0.97001 * 119.99887 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.58763 * 293.82054 * 24 15 14 40 40 H 1.09003 * 109.70368 * 173.46055 * 24 15 14 41 41 H 1.08998 * 109.49710 * 301.33837 * 25 12 11 42 42 H 1.08998 * 109.49627 * 61.43649 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6068 0.0004 6 6 4.9022 -1.3696 0.0003 7 6 2.3539 -1.1320 0.0003 8 16 1.8921 -2.8325 0.0007 9 8 0.5811 -2.8924 -0.5440 10 8 2.9932 -3.5474 -0.5433 11 7 1.7634 -3.3051 1.5825 12 6 0.7310 -2.7185 2.4406 13 6 1.3237 -1.5427 3.2204 14 6 0.2327 -0.9101 4.0900 15 7 -0.3636 -1.9544 4.9342 16 6 -0.4345 -1.7973 6.2928 17 1 0.2968 -1.1898 6.8050 18 6 -1.4464 -2.4191 7.0114 19 7 -2.5128 -2.8736 6.3879 20 14 -1.2946 -2.6109 8.8633 21 1 -1.1796 -1.2704 9.4920 22 1 -2.4988 -3.3023 9.3897 23 1 -0.0851 -3.4117 9.1806 24 6 -0.8827 -3.1702 4.2931 25 6 0.2208 -3.7772 3.4209 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5141 28 1 -0.3633 0.8902 0.5134 29 1 5.7356 -0.6672 0.0010 30 1 4.9551 -1.9970 0.8900 31 1 4.9556 -1.9963 -0.8899 32 1 2.3716 -3.9704 1.9410 33 1 -0.0959 -2.3657 1.8244 34 1 2.1345 -1.8991 3.8558 35 1 1.7082 -0.7996 2.5217 36 1 -0.5356 -0.4729 3.4523 37 1 0.6686 -0.1352 4.7207 38 1 -3.2200 -3.3077 6.8901 39 1 -1.7418 -2.9173 3.6718 40 1 -1.1822 -3.8887 5.0561 41 1 -0.1799 -4.6248 2.8649 42 1 1.0421 -4.1125 4.0543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:08 Heat of formation + Delta-G solvation = 1.511842 kcal Electronic energy + Delta-G solvation = -27748.024653 eV Core-core repulsion = 23859.014864 eV Total energy + Delta-G solvation = -3889.009789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.23904 -38.18696 -37.28623 -35.95096 -35.15909 -34.69553 -33.82074 -31.96940 -30.12722 -29.23809 -28.83347 -28.19379 -24.92246 -24.08034 -22.30089 -22.02353 -20.76239 -19.79068 -19.31825 -18.26874 -17.96464 -17.36300 -16.82659 -16.26829 -15.92051 -15.01405 -14.77082 -14.42151 -14.00117 -13.72684 -13.68028 -13.60510 -13.36867 -13.19710 -13.07878 -12.99564 -12.87544 -12.61918 -12.19079 -12.06945 -11.95914 -11.77989 -11.57502 -11.26368 -11.13033 -10.96236 -10.78964 -10.73930 -10.62515 -10.33958 -10.20112 -9.89549 -9.75624 -9.62842 -9.18564 -8.51928 -6.75580 -5.85123 -3.27951 0.30182 0.86019 1.71578 2.69616 3.01925 3.34935 3.41233 3.41919 3.61959 3.79534 4.06409 4.21370 4.44481 4.76088 4.87673 4.99032 5.04211 5.14106 5.25864 5.36889 5.39620 5.42247 5.46476 5.53438 5.56338 5.62496 5.71136 5.98599 6.03560 6.15650 6.29275 6.40582 6.53408 6.61803 6.69233 6.84077 7.02292 7.26680 7.57322 7.73941 7.92089 8.38497 9.14656 9.77335 10.33547 11.23596 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.003793 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.092960 B = 7379.691718 C = 7769.112523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.116 3.884 3 N -0.364 5.364 4 O 0.098 5.902 5 C 0.109 3.891 6 C -0.101 4.101 7 C -0.792 4.792 8 S 2.725 3.275 9 O -0.947 6.947 10 O -0.964 6.964 11 N -1.107 6.107 12 C 0.153 3.847 13 C -0.150 4.150 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.141 4.141 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.417 0.583 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.255 0.745 39 H 0.023 0.977 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 0.987 -13.313 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 N -0.073 5.073 4 O 0.040 5.960 5 C 0.042 3.958 6 C -0.158 4.158 7 C -0.880 4.880 8 S 2.809 3.191 9 O -0.937 6.937 10 O -0.954 6.954 11 N -0.868 5.868 12 C 0.048 3.952 13 C -0.191 4.191 14 C 0.020 3.980 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.044 3.956 25 C -0.183 4.183 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.632 1.949 -14.051 18.345 hybrid contribution 0.439 -0.390 1.451 1.565 sum 12.071 1.560 -12.600 17.518 Atomic orbital electron populations 1.20539 0.84696 1.05263 1.04666 1.23113 0.98872 0.85875 0.96714 1.73839 0.88743 1.23451 1.21296 1.84863 1.22435 1.22342 1.66370 1.24504 0.96970 0.84063 0.90286 1.20858 0.89346 0.99175 1.06427 1.33003 1.00046 1.26947 1.27962 1.01067 0.73701 0.71755 0.72622 1.93596 1.37984 1.85684 1.76465 1.93561 1.54736 1.70115 1.76950 1.55681 1.45744 1.54580 1.30776 1.20992 0.88006 0.94503 0.91734 1.22580 1.00658 0.96825 0.99001 1.20851 0.92873 0.91530 0.92740 1.44060 1.69886 1.14426 1.02913 1.19123 1.07480 1.30017 0.81958 0.91733 1.25043 0.94614 1.01719 0.97996 1.70008 1.06876 1.42670 1.34981 0.86372 0.76964 0.77989 0.85433 1.20895 1.21587 1.21026 1.20816 0.90734 0.89407 0.94645 1.22519 1.01536 0.96846 0.97354 0.88919 0.88703 0.89408 0.88736 0.87682 0.86651 0.74828 0.89602 0.91452 0.93436 0.96227 0.92497 0.93456 0.95867 0.88890 0.92190 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.78 36.01 0.35 -0.82 16 2 C 0.12 1.58 6.51 -82.10 -0.53 1.05 16 3 N -0.36 -5.16 12.07 33.42 0.40 -4.76 16 4 O 0.10 1.22 11.20 17.18 0.19 1.41 16 5 C 0.11 1.19 7.48 -35.30 -0.26 0.92 16 6 C -0.10 -0.71 9.42 36.01 0.34 -0.37 16 7 C -0.79 -10.00 5.38 -39.38 -0.21 -10.21 16 8 S 2.72 35.19 5.84 -107.50 -0.63 34.57 16 9 O -0.95 -14.71 15.75 -57.17 -0.90 -15.61 16 10 O -0.96 -12.88 16.45 -57.17 -0.94 -13.82 16 11 N -1.11 -13.61 5.47 -4.86 -0.03 -13.64 16 12 C 0.15 2.33 2.75 -67.89 -0.19 2.14 16 13 C -0.15 -2.38 5.68 -26.61 -0.15 -2.53 16 14 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 15 N -0.59 -13.89 2.99 -172.32 -0.52 -14.41 16 16 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 17 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 18 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 19 N -0.90 -25.17 11.19 55.49 0.62 -24.55 16 20 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.17 3.79 5.30 -3.71 -0.02 3.77 16 25 C -0.14 -2.43 5.61 -26.61 -0.15 -2.57 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.23 5.72 -51.93 -0.30 0.93 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.12 0.79 7.61 -51.93 -0.40 0.39 16 32 H 0.42 4.19 8.84 -34.47 -0.30 3.89 16 33 H 0.09 1.34 5.96 -51.93 -0.31 1.04 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.69 6.23 -51.93 -0.32 0.36 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 1.12 7.93 -51.92 -0.41 0.71 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -31.99 348.63 -8.36 -40.35 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.71 Total: 1.79 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.08 Total: -12.57 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.48 Total: -57.35 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.65 Total: -28.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 35.19 SS G_CDS: -0.63 Total: 34.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.99 -8.36 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.865 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds