Wall clock time and date at job start Tue Mar 31 2020 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00374 * 2 1 4 4 H 1.48495 * 109.47293 * 272.94875 * 3 2 1 5 5 H 1.48507 * 109.46910 * 32.94672 * 3 2 1 6 6 H 1.48500 * 109.47317 * 152.94521 * 3 2 1 7 7 C 1.38819 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99683 * 339.34164 * 7 2 1 9 9 N 1.36938 * 119.99902 * 159.34175 * 7 2 1 10 10 C 1.46923 * 120.63082 * 332.62667 * 9 7 2 11 11 C 1.53196 * 108.77718 * 233.58554 * 10 9 7 12 12 C 1.53039 * 109.31314 * 305.37337 * 11 10 9 13 13 N 1.46503 * 109.45818 * 181.38700 * 12 11 10 14 14 S 1.65600 * 120.00103 * 145.24705 * 13 12 11 15 15 O 1.42104 * 106.40079 * 178.25976 * 14 13 12 16 16 O 1.42096 * 106.40143 * 311.18017 * 14 13 12 17 17 C 1.76200 * 107.21848 * 64.72048 * 14 13 12 18 18 C 1.38233 * 120.40169 * 269.72532 * 17 14 13 19 19 N 1.31856 * 120.81407 * 179.68398 * 18 17 14 20 20 C 1.31870 * 121.75040 * 0.62758 * 19 18 17 21 21 C 1.38417 * 120.72876 * 359.65761 * 20 19 18 22 22 F 1.35101 * 120.44373 * 179.97438 * 21 20 19 23 23 C 1.38586 * 120.40544 * 90.00084 * 17 14 13 24 24 C 1.53040 * 109.52892 * 61.36838 * 12 11 10 25 25 C 1.46922 * 120.62601 * 152.61029 * 9 7 2 26 26 H 0.96998 * 119.99427 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.58056 * 113.80295 * 10 9 7 28 28 H 1.08997 * 109.71000 * 353.44906 * 10 9 7 29 29 H 1.08995 * 109.49648 * 185.41720 * 11 10 9 30 30 H 1.09007 * 109.49128 * 65.32069 * 11 10 9 31 31 H 1.09002 * 109.45763 * 301.35475 * 12 11 10 32 32 H 0.96995 * 119.99500 * 324.96506 * 13 12 11 33 33 H 1.08000 * 119.59646 * 359.97438 * 18 17 14 34 34 H 1.08001 * 119.63156 * 179.68201 * 20 19 18 35 35 H 1.08001 * 120.80189 * 359.97438 * 23 17 14 36 36 H 1.08991 * 109.49790 * 58.58300 * 24 12 11 37 37 H 1.09000 * 109.49478 * 178.68057 * 24 12 11 38 38 H 1.09002 * 109.58717 * 246.20096 * 25 9 7 39 39 H 1.08998 * 109.59081 * 6.47849 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0824 -1.3982 5 1 1.4803 2.6339 0.7615 6 1 3.5776 1.4229 0.6368 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3136 -1.2401 -0.4189 10 6 3.8172 -0.2584 -1.3891 11 6 4.4621 -1.0078 -2.5594 12 6 5.5288 -1.9644 -2.0216 13 7 6.1707 -2.6586 -3.1407 14 16 7.7804 -3.0397 -3.0650 15 8 8.0856 -3.7330 -4.2673 16 8 8.4541 -1.8568 -2.6575 17 6 7.9802 -4.2021 -1.7560 18 6 8.2409 -3.7688 -0.4694 19 7 8.3858 -4.6313 0.5174 20 6 8.3013 -5.9324 0.3199 21 6 8.0481 -6.4412 -0.9422 22 9 7.9632 -7.7752 -1.1381 23 6 7.8836 -5.5620 -2.0047 24 6 4.8748 -2.9900 -1.0929 25 6 4.2350 -2.2631 0.0942 26 1 -0.4849 0.8401 0.0004 27 1 4.5597 0.3803 -0.9106 28 1 2.9923 0.3521 -1.7563 29 1 4.9246 -0.2921 -3.2390 30 1 3.6994 -1.5758 -3.0922 31 1 6.2779 -1.3986 -1.4676 32 1 5.6517 -2.8986 -3.9242 33 1 8.3224 -2.7107 -0.2692 34 1 8.4306 -6.6083 1.1522 35 1 7.6846 -5.9293 -3.0006 36 1 4.1083 -3.5391 -1.6396 37 1 5.6311 -3.6853 -0.7287 38 1 5.0115 -1.7879 0.6936 39 1 3.6845 -2.9759 0.7081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:27 Heat of formation + Delta-G solvation = -51.715317 kcal Electronic energy + Delta-G solvation = -26674.329659 eV Core-core repulsion = 22659.551462 eV Total energy + Delta-G solvation = -4014.778197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.45422 -40.51883 -38.48249 -37.47440 -36.14293 -34.96832 -33.22927 -32.08576 -31.56229 -30.54045 -29.80686 -24.95941 -24.85737 -24.19274 -22.98765 -22.01676 -20.12810 -19.73849 -18.71717 -17.96567 -17.78877 -17.39420 -16.96785 -16.39923 -16.28669 -16.07040 -15.28611 -14.78037 -14.40105 -14.31419 -14.11087 -13.92626 -13.78753 -13.52774 -13.36978 -13.07836 -12.80175 -12.40232 -12.38523 -12.29723 -12.02751 -11.97850 -11.70248 -11.18182 -10.99132 -10.87482 -10.84931 -10.50226 -10.20696 -10.12677 -9.86103 -9.65414 -9.61307 -9.31728 -8.70419 -7.08316 -6.01315 -3.38151 -0.14284 0.16782 0.44695 2.62749 2.94409 3.27501 3.36396 3.45544 3.46507 3.47383 3.79517 4.01226 4.25709 4.26417 4.42149 4.47035 4.74701 4.88787 4.91269 5.08331 5.16508 5.22275 5.26419 5.35881 5.41768 5.67764 5.88050 5.94902 6.00879 6.03777 6.24034 6.32410 6.48244 6.53466 6.55733 6.74915 6.88036 7.13611 7.87804 8.25798 8.85821 9.64542 10.00360 11.14407 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.003915 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.689014 B = 7150.967648 C = 7948.729802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.134 4.134 12 C 0.150 3.850 13 N -1.105 6.105 14 S 2.699 3.301 15 O -0.958 6.958 16 O -0.946 6.946 17 C -0.707 4.707 18 C 0.194 3.806 19 N -0.463 5.463 20 C 0.130 3.870 21 C 0.028 3.972 22 F -0.124 7.124 23 C -0.005 4.005 24 C -0.153 4.153 25 C 0.150 3.850 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.420 0.580 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.995 -10.653 -4.411 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.002 4.002 11 C -0.176 4.176 12 C 0.045 3.955 13 N -0.866 5.866 14 S 2.785 3.215 15 O -0.948 6.948 16 O -0.936 6.936 17 C -0.793 4.793 18 C 0.035 3.965 19 N -0.171 5.171 20 C -0.029 4.029 21 C 0.006 3.994 22 F -0.102 7.102 23 C -0.032 4.032 24 C -0.194 4.194 25 C 0.023 3.977 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.255 0.745 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.182 0.818 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.772 -9.956 -3.886 20.738 hybrid contribution -0.286 -0.315 -0.621 0.753 sum 17.486 -10.271 -4.506 20.774 Atomic orbital electron populations 1.69836 1.05788 1.26670 1.52616 1.25285 0.95214 0.97628 0.99298 0.86982 0.80140 0.84615 0.77116 1.21508 1.23079 1.19382 1.18902 0.84882 0.94811 1.40525 0.89671 1.44375 1.08680 1.33221 1.46487 1.21397 0.97563 0.92111 0.89109 1.22322 0.97216 0.98303 0.99723 1.20976 0.95844 0.93080 0.85647 1.55653 1.29567 1.73042 1.28351 1.01962 0.72976 0.73613 0.72987 1.93598 1.83073 1.75115 1.42992 1.93623 1.72211 1.44466 1.83305 1.32171 1.17293 1.11480 1.18353 1.22764 0.86808 1.00848 0.86058 1.67947 1.12992 1.02034 1.34131 1.23358 0.91450 0.92982 0.95098 1.18750 1.06012 0.78692 0.95965 1.91568 1.93780 1.29156 1.95739 1.21347 0.90692 0.91113 1.00064 1.22609 1.00066 0.97897 0.98790 1.20877 0.92601 0.91528 0.92666 0.92681 0.95165 0.90319 0.91626 0.90790 0.89264 0.74456 0.80120 0.80607 0.81802 0.90816 0.93106 0.95584 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.96 13.97 55.49 0.78 -26.18 16 2 C 0.03 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 21.46 24.34 -169.99 -4.14 17.32 16 4 H -0.29 -6.70 6.62 56.52 0.37 -6.33 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.27 -6.39 6.63 56.52 0.37 -6.02 16 7 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -13.25 2.77 -172.32 -0.48 -13.72 16 10 C 0.12 2.49 4.20 -3.71 -0.02 2.47 16 11 C -0.13 -2.07 5.61 -26.61 -0.15 -2.22 16 12 C 0.15 1.99 2.75 -67.89 -0.19 1.81 16 13 N -1.11 -11.73 5.47 -4.85 -0.03 -11.76 16 14 S 2.70 29.92 5.73 -107.50 -0.62 29.30 16 15 O -0.96 -12.24 17.36 -57.17 -0.99 -13.24 16 16 O -0.95 -12.81 16.65 -57.17 -0.95 -13.76 16 17 C -0.71 -7.18 5.01 -39.45 -0.20 -7.38 16 18 C 0.19 2.03 9.78 -17.54 -0.17 1.86 16 19 N -0.46 -4.93 10.36 -13.20 -0.14 -5.06 16 20 C 0.13 1.15 11.17 -17.47 -0.20 0.95 16 21 C 0.03 0.26 7.35 -39.28 -0.29 -0.03 16 22 F -0.12 -1.15 17.28 2.25 0.04 -1.11 16 23 C 0.00 -0.05 9.64 -39.21 -0.38 -0.42 16 24 C -0.15 -2.14 5.68 -26.61 -0.15 -2.29 16 25 C 0.15 2.66 6.52 -3.71 -0.02 2.64 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.03 0.59 7.07 -51.92 -0.37 0.23 16 28 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.15 7.51 -51.93 -0.39 0.76 16 32 H 0.42 3.69 8.84 -34.47 -0.30 3.38 16 33 H 0.18 1.68 7.62 -52.49 -0.40 1.28 16 34 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 1.27 7.71 -52.49 -0.40 0.86 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.61 6.13 -51.93 -0.32 0.29 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -33.11 331.56 -8.08 -41.20 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.56 Total: 1.17 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.00 Total: -9.15 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.13 Total: -56.73 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.94 Total: -27.00 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Atomic # 16 Polarization: 29.92 SS G_CDS: -0.62 Total: 29.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.11 -8.08 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.518 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds