Wall clock time and date at job start Tue Mar 31 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47321 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54481 * 291.62048 * 11 10 9 13 13 O 1.42105 * 110.54185 * 68.37636 * 11 10 9 14 14 N 1.65600 * 104.45042 * 179.97438 * 11 10 9 15 15 C 1.47157 * 120.98237 * 269.72074 * 14 11 10 16 16 C 1.53716 * 108.16448 * 129.42693 * 15 14 11 17 17 O 1.42965 * 109.14157 * 52.53875 * 16 15 14 18 18 C 1.42957 * 114.16944 * 297.28783 * 17 16 15 19 19 H 1.09004 * 109.51401 * 302.65746 * 18 17 16 20 20 C 1.53003 * 109.55543 * 182.53289 * 18 17 16 21 21 N 1.46499 * 109.47008 * 65.22716 * 20 18 17 22 22 C 1.34950 * 126.03499 * 125.00078 * 21 20 18 23 23 C 1.35316 * 107.74637 * 179.97438 * 22 21 20 24 24 C 1.39876 * 107.91799 * 0.02562 * 23 22 21 25 25 N 1.30838 * 108.20275 * 359.74226 * 24 23 22 26 26 C 1.47148 * 120.98371 * 89.99947 * 14 11 10 27 27 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 29 29 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 30 30 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 31 31 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 32 32 H 1.08998 * 109.68453 * 249.21032 * 15 14 11 33 33 H 1.08997 * 109.67991 * 9.76085 * 15 14 11 34 34 H 1.08991 * 109.65863 * 292.57863 * 16 15 14 35 35 H 1.08993 * 109.48621 * 172.39558 * 16 15 14 36 36 H 1.09000 * 109.46750 * 185.23036 * 20 18 17 37 37 H 1.08994 * 109.47186 * 305.22484 * 20 18 17 38 38 H 1.08001 * 126.12522 * 359.95667 * 22 21 20 39 39 H 1.08000 * 126.04124 * 180.02562 * 23 22 21 40 40 H 1.07993 * 125.89463 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.68518 * 350.23666 * 26 14 11 42 42 H 1.09000 * 109.68540 * 110.79176 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3380 -5.2330 0.0002 12 8 0.6644 -5.4194 1.2375 13 8 0.6635 -5.4200 -1.2365 14 7 2.5200 -6.3928 -0.0006 15 6 3.0555 -6.9278 -1.2625 16 6 4.5897 -6.8519 -1.2025 17 8 5.0436 -7.4829 -0.0026 18 6 4.5917 -6.8515 1.1978 19 1 4.9078 -5.8083 1.2017 20 6 5.1872 -7.5704 2.4100 21 7 6.6422 -7.3995 2.4130 22 6 7.3807 -6.8992 3.4257 23 6 8.6762 -6.9084 3.0351 24 6 8.7312 -7.4316 1.7390 25 7 7.5131 -7.7311 1.3671 26 6 3.0617 -6.9232 1.2606 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5570 0.8898 29 1 0.6239 -2.5567 -0.8903 30 1 2.8717 -3.6044 -0.8905 31 1 2.8717 -3.6044 0.8894 32 1 2.7409 -7.9642 -1.3848 33 1 2.6898 -6.3316 -2.0985 34 1 4.9057 -5.8088 -1.2072 35 1 5.0131 -7.3647 -2.0660 36 1 4.7698 -7.1481 3.3241 37 1 4.9462 -8.6321 2.3574 38 1 7.0050 -6.5533 4.3773 39 1 9.5188 -6.5713 3.6205 40 1 9.6252 -7.5685 1.1489 41 1 2.7001 -6.3240 2.0963 42 1 2.7477 -7.9592 1.3882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111359743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:19 Heat of formation + Delta-G solvation = -30.708166 kcal Electronic energy + Delta-G solvation = -26552.448882 eV Core-core repulsion = 22662.041929 eV Total energy + Delta-G solvation = -3890.406953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -41.24804 -39.47562 -36.80183 -35.60733 -34.90645 -34.28736 -33.96216 -31.29748 -31.23607 -30.06392 -28.00353 -25.88392 -25.62765 -23.57245 -21.98880 -21.20575 -21.09437 -20.68252 -18.77718 -17.80769 -17.43851 -16.82909 -16.63346 -16.10334 -15.76900 -15.40031 -15.15409 -14.75382 -14.66126 -14.59562 -14.11194 -14.00944 -13.73366 -13.48916 -12.99976 -12.80151 -12.58796 -12.46117 -12.12029 -11.95468 -11.84427 -11.71715 -11.62966 -11.48093 -11.12103 -11.04407 -10.71755 -10.68141 -10.60928 -10.45581 -10.32840 -9.77935 -9.55141 -9.30560 -8.85089 -8.68751 -8.55576 -6.17841 -4.24000 0.59281 1.78109 2.31439 2.75550 2.82685 3.23367 3.28552 3.30187 3.44299 4.10199 4.19157 4.32627 4.41557 4.50033 4.55581 4.67771 4.69541 4.81959 4.95443 5.03166 5.06231 5.17058 5.18058 5.24497 5.40291 5.43816 5.49827 5.59928 5.61565 5.63527 5.78652 5.86914 5.93874 6.38414 6.39975 6.52325 6.83003 6.97777 7.21853 7.27749 7.62001 7.74527 8.10868 8.79035 9.41151 10.93087 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003559 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.309576 B = 7865.166960 C = 9386.806076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.588 4.588 11 S 2.589 3.411 12 O -0.961 6.961 13 O -0.959 6.959 14 N -1.008 6.008 15 C 0.087 3.913 16 C 0.049 3.951 17 O -0.352 6.352 18 C 0.064 3.936 19 H 0.071 0.929 20 C 0.141 3.859 21 N -0.370 5.370 22 C 0.047 3.953 23 C -0.276 4.276 24 C 0.031 3.969 25 N -0.265 5.265 26 C 0.097 3.903 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.179 0.821 41 H 0.102 0.898 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -16.366 4.690 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.722 4.722 11 S 2.688 3.312 12 O -0.952 6.952 13 O -0.950 6.950 14 N -0.845 5.845 15 C -0.038 4.038 16 C -0.030 4.030 17 O -0.269 6.269 18 C 0.004 3.996 19 H 0.089 0.911 20 C 0.019 3.981 21 N -0.153 5.153 22 C -0.099 4.099 23 C -0.305 4.305 24 C -0.156 4.156 25 N -0.085 5.085 26 C -0.030 4.030 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.190 0.810 39 H 0.162 0.838 40 H 0.196 0.804 41 H 0.120 0.880 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.018 -17.135 3.755 21.264 hybrid contribution 1.424 1.906 0.679 2.474 sum 13.442 -15.229 4.435 20.792 Atomic orbital electron populations 1.69943 1.06127 1.27400 1.49310 1.25063 0.94977 0.99550 0.94796 0.86520 0.79505 0.82470 0.78741 1.20994 1.20065 1.20046 1.20943 0.92989 0.89731 1.52518 0.92142 1.18961 0.92635 0.90501 0.98896 1.30503 1.13682 1.18040 1.09935 1.05842 0.74782 0.76311 0.74215 1.93536 1.71116 1.85203 1.45314 1.93545 1.71012 1.85142 1.45279 1.58129 1.59082 1.56359 1.10885 1.22175 0.94592 1.01184 0.85860 1.23064 0.93123 0.98639 0.88136 1.88093 1.72679 1.53741 1.12420 1.22718 0.93236 0.97339 0.86336 0.91127 1.21740 0.74924 1.03089 0.98350 1.48619 1.06601 1.48550 1.11498 1.22609 0.92308 1.00219 0.94735 1.21504 0.96671 1.14098 0.98259 1.23967 0.96117 0.99633 0.95837 1.77625 0.99626 1.21560 1.09717 1.21918 0.92677 1.01681 0.86716 0.92402 0.94848 0.94810 0.86287 0.86432 0.90378 0.88128 0.92548 0.87613 0.86707 0.88542 0.81035 0.83789 0.80358 0.88011 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 10 C -0.59 -10.93 6.12 37.16 0.23 -10.71 16 11 S 2.59 45.15 5.42 -107.50 -0.58 44.56 16 12 O -0.96 -19.01 16.82 -57.54 -0.97 -19.98 16 13 O -0.96 -19.36 16.80 -57.54 -0.97 -20.32 16 14 N -1.01 -13.25 3.27 -112.82 -0.37 -13.62 16 15 C 0.09 0.99 6.53 -3.31 -0.02 0.97 16 16 C 0.05 0.51 7.00 37.53 0.26 0.77 16 17 O -0.35 -4.16 9.45 -35.23 -0.33 -4.49 16 18 C 0.06 0.66 2.99 -26.57 -0.08 0.58 16 19 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 20 C 0.14 1.16 6.21 -4.04 -0.03 1.13 16 21 N -0.37 -3.86 3.68 -61.37 -0.23 -4.08 16 22 C 0.05 0.41 11.45 -17.22 -0.20 0.21 16 23 C -0.28 -2.50 10.80 -40.01 -0.43 -2.94 16 24 C 0.03 0.32 12.03 -17.36 -0.21 0.11 16 25 N -0.26 -3.31 11.58 30.62 0.35 -2.95 16 26 C 0.10 1.03 5.79 -3.53 -0.02 1.01 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.14 7.22 -51.93 -0.37 0.76 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.10 1.02 7.23 -51.93 -0.38 0.65 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -37.08 363.77 -9.14 -46.23 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.21 Total: -0.10 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -1.04 Total: -21.25 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.50 Total: -46.08 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -2.27 Total: -44.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.58 Total: 44.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.08 -9.14 -46.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111359743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.518 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.68 seconds