Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99797 * 2 1 4 4 H 1.48494 * 109.47369 * 269.99926 * 3 2 1 5 5 H 1.48497 * 109.47109 * 30.00276 * 3 2 1 6 6 H 1.48499 * 109.46973 * 149.99838 * 3 2 1 7 7 C 1.37877 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99966 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00100 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47251 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47174 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54580 * 68.37730 * 11 10 9 13 13 O 1.42099 * 110.54340 * 291.62720 * 11 10 9 14 14 N 1.65603 * 104.45003 * 180.02562 * 11 10 9 15 15 C 1.47149 * 120.98325 * 90.00051 * 14 11 10 16 16 C 1.53298 * 108.38066 * 230.55638 * 15 14 11 17 17 O 1.42964 * 109.22476 * 307.69614 * 16 15 14 18 18 C 1.42959 * 114.16276 * 62.58489 * 17 16 15 19 19 H 1.09003 * 109.51585 * 57.39453 * 18 17 16 20 20 C 1.53000 * 109.50882 * 177.49607 * 18 17 16 21 21 N 1.46503 * 109.47420 * 294.99590 * 20 18 17 22 22 C 1.34940 * 126.03757 * 124.99460 * 21 20 18 23 23 C 1.35317 * 107.74438 * 179.77616 * 22 21 20 24 24 C 1.39872 * 107.92021 * 0.23195 * 23 22 21 25 25 N 1.30838 * 108.20312 * 359.97438 * 24 23 22 26 26 C 1.47158 * 120.97738 * 270.02230 * 14 11 10 27 27 H 0.96993 * 120.00040 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46996 * 60.00341 * 9 7 2 29 29 H 1.08998 * 109.47475 * 300.00187 * 9 7 2 30 30 H 1.09003 * 109.46630 * 60.00376 * 10 9 7 31 31 H 1.08998 * 109.47246 * 300.00588 * 10 9 7 32 32 H 1.08993 * 109.68051 * 110.83522 * 15 14 11 33 33 H 1.08996 * 109.71161 * 350.29462 * 15 14 11 34 34 H 1.09003 * 109.51217 * 187.77560 * 16 15 14 35 35 H 1.08998 * 109.51297 * 67.62596 * 16 15 14 36 36 H 1.09005 * 109.47317 * 174.99813 * 20 18 17 37 37 H 1.08999 * 109.47532 * 55.00115 * 20 18 17 38 38 H 1.08002 * 126.13053 * 0.04913 * 22 21 20 39 39 H 1.08003 * 126.04109 * 180.21059 * 23 22 21 40 40 H 1.08001 * 125.89461 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.68474 * 9.71666 * 26 14 11 42 42 H 1.08999 * 109.67934 * 249.16047 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0010 11 16 5.8356 -2.6364 -0.0009 12 8 6.3342 -2.1460 1.2360 13 8 6.3343 -2.1460 -1.2379 14 7 6.2489 -4.2400 -0.0015 15 6 6.4380 -4.9731 -1.2633 16 6 5.6100 -6.2617 -1.2025 17 8 5.9294 -6.9703 -0.0026 18 6 5.6094 -6.2627 1.1977 19 1 4.5479 -6.0149 1.2023 20 6 5.9351 -7.1383 2.4093 21 7 5.0629 -8.3154 2.4099 22 6 5.4664 -9.6024 2.4505 23 6 4.3604 -10.3819 2.4403 24 6 3.2428 -9.5426 2.3863 25 7 3.6628 -8.3036 2.3655 26 6 6.4374 -4.9741 1.2599 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1504 -0.8908 31 1 3.6586 -3.1502 0.8892 32 1 7.4921 -5.2197 -1.3901 33 1 6.1014 -4.3595 -2.0989 34 1 5.8424 -6.8850 -2.0661 35 1 4.5487 -6.0132 -1.2070 36 1 5.7751 -6.5672 3.3239 37 1 6.9760 -7.4574 2.3578 38 1 6.4888 -9.9483 2.4892 39 1 4.3435 -11.4615 2.4684 40 1 2.2113 -9.8621 2.3663 41 1 6.1000 -4.3609 2.0955 42 1 7.4915 -5.2208 1.3870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111359744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -28.082936 kcal Electronic energy + Delta-G solvation = -26591.775189 eV Core-core repulsion = 22701.482074 eV Total energy + Delta-G solvation = -3890.293115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.26551 -39.58590 -36.93059 -35.74039 -35.02357 -34.33028 -33.99725 -31.52812 -31.35751 -30.11506 -28.08655 -26.09953 -25.83767 -23.64217 -21.89110 -21.24840 -20.96704 -20.57192 -18.89497 -17.93762 -17.47900 -17.03275 -16.91165 -16.11309 -15.86372 -15.54442 -15.29471 -14.88246 -14.75456 -14.33923 -14.14674 -14.09170 -13.78766 -13.68160 -13.00929 -12.85131 -12.72675 -12.60942 -12.23564 -12.09033 -11.95897 -11.84976 -11.69062 -11.58934 -11.30496 -11.27372 -10.86509 -10.73264 -10.57907 -10.47651 -10.15031 -9.70600 -9.55910 -9.42506 -8.94191 -8.71453 -8.69225 -6.19056 -4.20846 0.47220 1.77679 2.29621 2.70191 2.74906 3.23879 3.30930 3.31446 3.34910 4.04438 4.13426 4.32873 4.35613 4.42564 4.51802 4.58880 4.67754 4.82408 4.90370 4.98443 5.07834 5.08223 5.12086 5.15878 5.30854 5.39193 5.43978 5.46716 5.58014 5.62378 5.71654 5.84186 5.87172 6.20904 6.30388 6.51471 6.75331 6.80820 6.85156 6.87941 7.50892 7.58539 8.33574 8.82039 9.40093 10.93276 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.003457 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.493063 B = 8097.893911 C = 9295.957193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.581 4.581 11 S 2.587 3.413 12 O -0.960 6.960 13 O -0.960 6.960 14 N -1.007 6.007 15 C 0.088 3.912 16 C 0.049 3.951 17 O -0.371 6.371 18 C 0.062 3.938 19 H 0.084 0.916 20 C 0.143 3.857 21 N -0.365 5.365 22 C 0.060 3.940 23 C -0.279 4.279 24 C 0.044 3.956 25 N -0.291 5.291 26 C 0.097 3.903 27 H 0.267 0.733 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.181 0.819 41 H 0.104 0.896 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.249 -19.751 2.847 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.715 4.715 11 S 2.686 3.314 12 O -0.950 6.950 13 O -0.950 6.950 14 N -0.843 5.843 15 C -0.037 4.037 16 C -0.029 4.029 17 O -0.290 6.290 18 C 0.001 3.999 19 H 0.102 0.898 20 C 0.020 3.980 21 N -0.147 5.147 22 C -0.086 4.086 23 C -0.309 4.309 24 C -0.143 4.143 25 N -0.112 5.112 26 C -0.029 4.029 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.188 0.812 39 H 0.162 0.838 40 H 0.198 0.802 41 H 0.122 0.878 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.605 -17.740 2.804 23.148 hybrid contribution -0.142 -0.175 -0.088 0.241 sum 14.463 -17.914 2.716 23.183 Atomic orbital electron populations 1.69877 1.06201 1.27291 1.49811 1.24984 0.94821 0.99144 0.94106 0.86929 0.80683 0.83726 0.79132 1.19653 1.20692 1.18659 1.20832 0.87707 0.94954 1.52444 0.90389 1.19411 1.00016 0.87256 0.97837 1.30351 1.20926 1.09278 1.10919 1.05882 0.79230 0.72061 0.74255 1.93546 1.78897 1.77374 1.45231 1.93548 1.78894 1.77342 1.45215 1.58065 1.85570 1.29676 1.10970 1.22076 1.01598 0.94155 0.85906 1.23005 0.98976 0.93303 0.87617 1.87919 1.84951 1.42945 1.13159 1.22816 1.00380 0.91259 0.85416 0.89774 1.21728 0.93227 0.84977 0.98030 1.48535 1.04807 1.05194 1.56187 1.22510 1.00384 0.84244 1.01495 1.21480 0.91400 1.00559 1.17445 1.23889 1.00231 0.90205 0.99936 1.77404 0.88305 1.21737 1.23763 1.21930 1.01160 0.93216 0.86625 0.92330 0.94943 0.95396 0.85691 0.85638 0.90350 0.88002 0.87585 0.92133 0.87681 0.87539 0.81209 0.83769 0.80187 0.87801 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 10 C -0.58 -10.51 6.12 37.16 0.23 -10.28 16 11 S 2.59 42.94 5.42 -107.50 -0.58 42.36 16 12 O -0.96 -18.09 16.82 -57.54 -0.97 -19.06 16 13 O -0.96 -18.18 16.81 -57.54 -0.97 -19.15 16 14 N -1.01 -12.62 3.27 -113.06 -0.37 -12.99 16 15 C 0.09 0.93 6.50 -3.53 -0.02 0.91 16 16 C 0.05 0.48 6.98 37.31 0.26 0.74 16 17 O -0.37 -4.07 10.33 -35.23 -0.36 -4.43 16 18 C 0.06 0.63 2.90 -26.58 -0.08 0.55 16 19 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 20 C 0.14 1.16 6.18 -4.04 -0.02 1.14 16 21 N -0.37 -3.83 3.63 -61.36 -0.22 -4.06 16 22 C 0.06 0.52 11.45 -17.23 -0.20 0.32 16 23 C -0.28 -2.52 10.80 -40.01 -0.43 -2.96 16 24 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 25 N -0.29 -3.75 12.34 30.63 0.38 -3.37 16 26 C 0.10 1.01 5.79 -3.53 -0.02 0.99 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 29 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 30 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 31 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.07 7.23 -51.93 -0.38 0.69 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.11 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.10 1.05 7.23 -51.93 -0.38 0.67 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -37.18 361.53 -8.75 -45.93 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.17 Total: 0.25 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -1.04 Total: -21.43 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.56 Total: -46.64 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -2.30 Total: -42.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 42.94 SS G_CDS: -0.58 Total: 42.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.18 -8.75 -45.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111359744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.851 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds