Wall clock time and date at job start Tue Mar 31 2020 04:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00112 * 2 1 4 4 O 1.20825 * 119.99278 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00159 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47141 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99637 * 264.08669 * 6 5 3 8 8 H 1.07998 * 119.99480 * 196.60174 * 7 6 5 9 9 C 1.38938 * 120.00217 * 16.60130 * 7 6 5 10 10 N 1.31417 * 120.00259 * 20.79551 * 9 7 6 11 11 Si 1.86800 * 120.00203 * 200.79859 * 9 7 6 12 12 H 1.48497 * 109.46857 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47258 * 119.99588 * 11 9 7 14 14 H 1.48492 * 109.47202 * 239.99966 * 11 9 7 15 15 C 1.34774 * 120.00022 * 84.08725 * 6 5 3 16 16 O 1.21294 * 120.00035 * 359.97438 * 15 6 5 17 17 C 1.50699 * 119.99800 * 180.02562 * 15 6 5 18 18 N 1.46501 * 109.47325 * 179.97438 * 17 15 6 19 19 N 1.40080 * 126.03782 * 270.13677 * 18 17 15 20 20 C 1.30854 * 108.22738 * 180.29870 * 19 18 17 21 21 C 1.50703 * 125.89289 * 179.76454 * 20 19 18 22 22 C 1.39928 * 108.21041 * 359.74488 * 20 19 18 23 23 Cl 1.73597 * 126.04457 * 179.97438 * 22 20 19 24 24 C 1.35046 * 126.03823 * 89.99087 * 18 17 15 25 25 C 1.50700 * 126.13273 * 359.97073 * 24 18 17 26 26 H 1.08999 * 109.47049 * 60.00710 * 1 2 3 27 27 H 1.09001 * 109.46861 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47567 * 299.99845 * 1 2 3 29 29 H 1.09000 * 109.47189 * 59.99887 * 5 3 2 30 30 H 1.08998 * 109.47320 * 300.00097 * 5 3 2 31 31 H 0.97003 * 120.00132 * 180.02562 * 10 9 7 32 32 H 1.08995 * 109.47623 * 59.99762 * 17 15 6 33 33 H 1.09004 * 109.46908 * 299.99399 * 17 15 6 34 34 H 1.08999 * 109.47178 * 269.97242 * 21 20 19 35 35 H 1.08997 * 109.47214 * 29.97821 * 21 20 19 36 36 H 1.09004 * 109.46697 * 149.97708 * 21 20 19 37 37 H 1.09000 * 109.46943 * 269.71119 * 25 24 18 38 38 H 1.09008 * 109.46897 * 149.71309 * 25 24 18 39 39 H 1.08998 * 109.47486 * 29.71648 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.2937 3.3027 -1.1797 8 1 4.8472 4.2301 -1.1711 9 6 3.8980 2.7410 -2.3873 10 7 2.9095 1.8755 -2.4169 11 14 4.7711 3.2158 -3.9690 12 1 5.8403 4.2012 -3.6675 13 1 5.3721 2.0057 -4.5852 14 1 3.7947 3.8185 -4.9116 15 6 4.0570 3.3598 1.1622 16 8 3.7804 2.8088 2.2068 17 6 4.4837 4.8051 1.1626 18 7 4.4847 5.3137 2.5365 19 7 3.4040 5.9164 3.1930 20 6 3.7889 6.2427 4.4004 21 6 2.9403 6.9204 5.4453 22 6 5.1242 5.8536 4.5538 23 17 6.0931 6.0671 5.9783 24 6 5.5269 5.2817 3.3948 25 6 6.8949 4.7167 3.1108 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.9564 0.7806 -0.8891 30 1 3.9557 0.7810 0.8908 31 1 2.6335 1.4831 -3.2599 32 1 3.7885 5.3895 0.5599 33 1 5.4865 4.8880 0.7434 34 1 3.0430 8.0015 5.3516 35 1 1.8965 6.6408 5.3030 36 1 3.2679 6.6089 6.4372 37 1 6.9173 3.6628 3.3880 38 1 7.6403 5.2609 3.6909 39 1 7.1165 4.8178 2.0484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120722965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:34 Heat of formation + Delta-G solvation = -38.003400 kcal Electronic energy + Delta-G solvation = -26586.022749 eV Core-core repulsion = 22557.422650 eV Total energy + Delta-G solvation = -4028.600099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11664 -39.54266 -38.36458 -36.19432 -35.56654 -34.75313 -33.75331 -31.81634 -31.62512 -29.84315 -28.47826 -26.78615 -26.54082 -25.57488 -24.40868 -20.74122 -20.19705 -19.64754 -19.17600 -17.52350 -16.81686 -16.66114 -16.02965 -15.58963 -15.34775 -14.99353 -14.75799 -14.42569 -14.22257 -13.84879 -13.64110 -13.20582 -12.98968 -12.94825 -12.61136 -12.53230 -12.32458 -12.14736 -11.87979 -11.79766 -11.49970 -11.49299 -11.44683 -11.28867 -10.98878 -10.94233 -10.74147 -10.53404 -10.13362 -9.88288 -9.73780 -9.20541 -9.12918 -8.64308 -8.16189 -7.96848 -6.69129 -4.20956 2.00190 2.27601 2.82929 2.94140 3.04971 3.08657 3.11456 3.31194 3.60209 3.82401 3.94198 4.44200 4.73539 4.76847 4.86042 5.11644 5.35763 5.48081 5.59066 5.65575 5.71171 5.72996 5.74085 5.76529 5.86746 5.90102 5.93554 6.02113 6.12481 6.26348 6.29657 6.49427 6.72405 7.06489 7.20189 7.30444 7.44765 7.95324 8.00119 8.76697 8.99775 9.12080 9.51574 10.37515 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.003927 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.081499 B = 7128.799200 C = 8283.112534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.484 3.516 4 O -0.497 6.497 5 C 0.158 3.842 6 N -0.421 5.421 7 C -0.349 4.349 8 H 0.105 0.895 9 C 0.043 3.957 10 N -0.861 5.861 11 Si 0.927 3.073 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.280 1.280 15 C 0.452 3.548 16 O -0.583 6.583 17 C 0.132 3.868 18 N -0.331 5.331 19 N -0.270 5.270 20 C 0.080 3.920 21 C -0.070 4.070 22 C -0.195 4.195 23 Cl -0.056 7.056 24 C 0.116 3.884 25 C -0.094 4.094 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.275 0.725 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 2.995 6.271 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.325 3.675 4 O -0.382 6.382 5 C 0.033 3.967 6 N -0.141 5.141 7 C -0.475 4.475 8 H 0.123 0.877 9 C -0.163 4.163 10 N -0.498 5.498 11 Si 0.753 3.247 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.206 1.206 15 C 0.239 3.761 16 O -0.468 6.468 17 C 0.008 3.992 18 N -0.112 5.112 19 N -0.092 5.092 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.234 4.234 23 Cl -0.028 7.028 24 C -0.014 4.014 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.852 2.879 5.738 7.487 hybrid contribution 0.607 0.148 -0.549 0.832 sum 4.459 3.027 5.189 7.481 Atomic orbital electron populations 1.22943 0.78543 1.01881 1.01704 1.86445 1.21806 1.35371 1.85685 1.23873 0.92225 0.80654 0.70770 1.90534 1.66454 1.36358 1.44843 1.20491 0.87442 0.85066 1.03748 1.43362 1.56750 1.08210 1.05752 1.19643 1.35594 1.09999 0.82289 0.87737 1.25248 0.94562 0.96726 0.99812 1.69855 1.22332 1.29380 1.28221 0.85866 0.79294 0.78716 0.80801 1.19037 1.20231 1.20631 1.20097 0.83737 0.87709 0.84525 1.90625 1.54856 1.69450 1.31852 1.21483 1.05034 0.95209 0.77466 1.47875 1.07218 1.44620 1.11466 1.77485 1.08691 1.16602 1.06391 1.22144 0.92558 0.99718 0.94249 1.20150 0.98480 0.99431 0.94786 1.20146 0.93948 1.18510 0.90762 1.98262 1.70348 1.96796 1.37403 1.20628 0.92353 0.98578 0.89826 1.20507 0.89680 1.01989 1.03085 0.92571 0.89521 0.93105 0.85646 0.89933 0.91401 0.85964 0.86789 0.90569 0.90699 0.90461 0.89478 0.89635 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.07 10.57 -39.26 -0.41 -8.49 16 3 C 0.48 11.87 6.13 36.00 0.22 12.09 16 4 O -0.50 -13.81 15.79 -18.75 -0.30 -14.11 16 5 C 0.16 3.65 5.14 -5.20 -0.03 3.62 16 6 N -0.42 -9.94 2.18 -116.10 -0.25 -10.20 16 7 C -0.35 -7.99 9.15 -14.93 -0.14 -8.13 16 8 H 0.11 2.16 6.55 -52.49 -0.34 1.82 16 9 C 0.04 0.99 4.90 -17.47 -0.09 0.90 16 10 N -0.86 -21.14 9.24 55.49 0.51 -20.63 16 11 Si 0.93 17.82 29.60 -169.99 -5.03 12.78 16 12 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 13 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 15 C 0.45 10.53 7.49 -10.99 -0.08 10.45 16 16 O -0.58 -15.31 16.11 5.55 0.09 -15.22 16 17 C 0.13 2.55 5.17 -5.19 -0.03 2.52 16 18 N -0.33 -6.47 3.10 -58.27 -0.18 -6.65 16 19 N -0.27 -5.52 12.57 33.69 0.42 -5.10 16 20 C 0.08 1.40 7.22 -82.37 -0.59 0.81 16 21 C -0.07 -0.91 10.31 36.01 0.37 -0.54 16 22 C -0.20 -3.25 6.63 -39.97 -0.27 -3.52 16 23 Cl -0.06 -0.76 28.58 -51.86 -1.48 -2.24 16 24 C 0.12 1.99 6.94 -82.20 -0.57 1.42 16 25 C -0.09 -1.24 9.95 36.01 0.36 -0.88 16 26 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 29 H 0.13 2.83 6.35 -51.93 -0.33 2.50 16 30 H 0.08 1.79 7.61 -51.93 -0.39 1.40 16 31 H 0.28 6.44 8.31 -40.82 -0.34 6.11 16 32 H 0.12 2.38 8.10 -51.93 -0.42 1.96 16 33 H 0.11 1.79 6.61 -51.93 -0.34 1.45 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.08 0.94 7.91 -51.92 -0.41 0.53 16 39 H 0.08 0.89 7.08 -51.93 -0.37 0.52 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -32.52 353.98 -5.77 -38.29 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.70 Total: 5.65 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 0.23 Total: 20.58 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.50 Total: -42.57 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.62 Total: -37.81 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.52 -5.77 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120722965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.282 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds