Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48505 * 109.46934 * 239.99834 * 3 2 1 5 5 H 1.48495 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47370 * 120.00049 * 3 2 1 7 7 C 1.37879 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99585 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46757 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47238 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54650 * 68.37197 * 11 10 9 13 13 O 1.42101 * 110.53998 * 291.62623 * 11 10 9 14 14 N 1.65597 * 104.45432 * 179.97438 * 11 10 9 15 15 C 1.46506 * 119.99791 * 64.99519 * 14 11 10 16 16 C 1.50701 * 109.46793 * 165.00139 * 15 14 11 17 17 C 1.38165 * 120.03120 * 260.00109 * 16 15 14 18 18 C 1.38240 * 120.05959 * 179.97438 * 17 16 15 19 19 C 1.38296 * 120.11004 * 0.02562 * 18 17 16 20 20 C 1.38123 * 120.05444 * 0.03117 * 19 18 17 21 21 C 1.38709 * 120.02637 * 79.72815 * 16 15 14 22 22 O 1.35904 * 120.05758 * 359.97438 * 21 16 15 23 23 C 1.42901 * 117.00126 * 180.02562 * 22 21 16 24 24 C 1.53000 * 109.46927 * 179.97438 * 23 22 21 25 25 O 1.42903 * 109.46884 * 65.00230 * 24 23 22 26 26 H 0.96999 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47290 * 59.99921 * 9 7 2 28 28 H 1.08998 * 109.47298 * 299.99431 * 9 7 2 29 29 H 1.09000 * 109.47627 * 59.99957 * 10 9 7 30 30 H 1.09004 * 109.47299 * 299.99678 * 10 9 7 31 31 H 0.96995 * 120.00100 * 245.27435 * 14 11 10 32 32 H 1.08998 * 109.47105 * 285.00387 * 15 14 11 33 33 H 1.09002 * 109.47033 * 45.00797 * 15 14 11 34 34 H 1.07999 * 119.96883 * 359.97438 * 17 16 15 35 35 H 1.07995 * 119.95087 * 179.97438 * 18 17 16 36 36 H 1.07992 * 119.97050 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.03058 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47143 * 299.99953 * 23 22 21 39 39 H 1.09003 * 109.47266 * 60.00257 * 23 22 21 40 40 H 1.09001 * 109.47015 * 184.99792 * 24 23 22 41 41 H 1.09000 * 109.47441 * 305.00502 * 24 23 22 42 42 H 0.96701 * 114.00136 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3383 -5.2331 -0.0002 12 8 0.6646 -5.4194 -1.2374 13 8 0.6639 -5.4200 1.2365 14 7 2.5204 -6.3927 -0.0009 15 6 3.4189 -6.5235 1.1489 16 6 4.1389 -7.8453 1.0759 17 6 3.7038 -8.9127 1.8378 18 6 4.3635 -10.1257 1.7709 19 6 5.4606 -10.2740 0.9421 20 6 5.9002 -9.2097 0.1794 21 6 5.2356 -7.9932 0.2396 22 8 5.6619 -6.9466 -0.5154 23 6 6.7970 -7.1713 -1.3539 24 6 7.1256 -5.8894 -2.1216 25 8 7.5305 -4.8737 -1.2015 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5568 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8719 -3.6044 -0.8895 31 1 2.6205 -6.9828 -0.7642 32 1 4.1466 -5.7121 1.1354 33 1 2.8389 -6.4761 2.0705 34 1 2.8475 -8.7992 2.4861 35 1 4.0221 -10.9587 2.3675 36 1 5.9740 -11.2227 0.8913 37 1 6.7573 -9.3259 -0.4674 38 1 7.6513 -7.4568 -0.7400 39 1 6.5741 -7.9707 -2.0607 40 1 7.9343 -6.0849 -2.8259 41 1 6.2424 -5.5553 -2.6661 42 1 7.7551 -4.0311 -1.6196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121659475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = -143.787301 kcal Electronic energy + Delta-G solvation = -26023.143801 eV Core-core repulsion = 22095.540618 eV Total energy + Delta-G solvation = -3927.603184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52773 -38.07136 -36.63286 -36.50070 -35.42246 -35.17702 -33.83075 -31.28548 -31.09621 -30.78000 -29.35362 -25.65477 -25.53165 -23.97330 -21.91242 -21.63244 -21.42724 -18.83834 -18.51252 -17.88479 -17.41593 -16.69713 -16.35286 -16.11401 -15.87117 -15.43473 -15.32054 -14.87380 -14.55682 -14.47979 -14.44962 -14.19511 -13.51752 -13.26636 -12.93919 -12.88190 -12.74884 -12.45059 -11.92278 -11.68829 -11.66353 -11.57145 -11.49466 -11.41048 -11.24202 -11.02999 -10.91521 -10.91003 -10.38894 -10.34904 -10.31166 -9.73154 -9.40597 -9.14723 -8.92453 -8.45883 -8.38110 -6.08083 -4.13247 0.80970 1.13176 1.22835 2.90576 3.23276 3.29786 3.34380 3.36424 3.62107 3.86583 4.32131 4.41041 4.44852 4.51838 4.64987 4.74487 4.79944 4.85145 4.93694 4.97965 5.10677 5.15634 5.26914 5.32999 5.36374 5.49987 5.55096 5.73104 5.78916 5.83918 6.00242 6.13559 6.22192 6.32673 6.55935 6.57793 7.17073 7.22319 7.35172 7.36166 7.42755 7.85195 8.23036 8.90073 9.50993 11.03011 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.003514 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.606838 B = 7966.519052 C = 9565.348947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.594 3.406 12 O -0.970 6.970 13 O -0.968 6.968 14 N -1.120 6.120 15 C 0.166 3.834 16 C -0.126 4.126 17 C -0.063 4.063 18 C -0.161 4.161 19 C -0.077 4.077 20 C -0.215 4.215 21 C 0.145 3.855 22 O -0.296 6.296 23 C 0.058 3.942 24 C 0.076 3.924 25 O -0.566 6.566 26 H 0.265 0.735 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.255 -19.701 -1.590 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.691 3.309 12 O -0.960 6.960 13 O -0.958 6.958 14 N -0.877 5.877 15 C 0.040 3.960 16 C -0.128 4.128 17 C -0.081 4.081 18 C -0.180 4.180 19 C -0.095 4.095 20 C -0.234 4.234 21 C 0.099 3.901 22 O -0.209 6.209 23 C -0.017 4.017 24 C -0.002 4.002 25 O -0.372 6.372 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.244 0.756 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 14.939 -19.933 -1.007 24.931 hybrid contribution 1.505 1.133 -0.896 2.086 sum 16.444 -18.800 -1.903 25.049 Atomic orbital electron populations 1.69946 1.06105 1.27235 1.49666 1.25067 0.94962 0.99492 0.94990 0.86533 0.79481 0.82582 0.78674 1.20145 1.21130 1.20063 1.20984 0.93051 0.89803 1.52000 0.92074 1.18959 0.92708 0.90615 0.98824 1.30427 1.13603 1.17978 1.10155 1.05490 0.74655 0.76633 0.74084 1.93543 1.71807 1.85395 1.45256 1.93530 1.71520 1.85037 1.45747 1.55768 1.52523 1.52303 1.27078 1.19985 0.92296 0.94488 0.89229 1.19231 0.96573 0.97085 0.99898 1.21050 0.98496 0.91560 0.97026 1.21059 0.97515 0.97887 1.01513 1.20953 0.95869 0.97948 0.94749 1.21214 1.03228 0.93467 1.05475 1.18885 0.93206 0.86643 0.91379 1.86215 1.45955 1.34713 1.54022 1.22895 0.87942 0.97474 0.93376 1.22186 0.99127 0.87858 0.91019 1.86545 1.89635 1.24514 1.36464 0.92525 0.94917 0.94832 0.86272 0.86132 0.75580 0.90473 0.89506 0.84793 0.85757 0.85889 0.85558 0.91290 0.90609 0.91571 0.92030 0.76800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.59 -11.69 6.01 37.16 0.22 -11.47 16 11 S 2.59 48.45 5.46 -107.50 -0.59 47.86 16 12 O -0.97 -20.87 18.08 -57.54 -1.04 -21.91 16 13 O -0.97 -20.64 17.50 -57.54 -1.01 -21.64 16 14 N -1.12 -16.16 5.88 -11.65 -0.07 -16.23 16 15 C 0.17 2.18 5.92 -5.19 -0.03 2.15 16 16 C -0.13 -1.49 5.29 -104.47 -0.55 -2.05 16 17 C -0.06 -0.65 9.66 -39.61 -0.38 -1.03 16 18 C -0.16 -1.43 10.04 -39.56 -0.40 -1.83 16 19 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 20 C -0.22 -1.98 9.04 -39.43 -0.36 -2.34 16 21 C 0.15 1.65 6.66 -39.22 -0.26 1.39 16 22 O -0.30 -3.47 9.34 -24.29 -0.23 -3.70 16 23 C 0.06 0.49 5.12 37.16 0.19 0.68 16 24 C 0.08 0.59 7.43 37.16 0.28 0.87 16 25 O -0.57 -5.68 13.62 -40.09 -0.55 -6.23 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 30 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 31 H 0.41 5.38 8.61 -34.47 -0.30 5.08 16 32 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 33 H 0.09 1.11 7.56 -51.93 -0.39 0.72 16 34 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 38 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 39 H 0.08 0.46 7.68 -51.93 -0.40 0.06 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.38 2.30 9.12 45.56 0.42 2.71 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -37.91 372.61 -9.54 -47.44 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.15 Total: 5.90 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -2.24 Total: -27.41 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.67 Total: -42.29 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -2.82 Total: -53.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 48.45 SS G_CDS: -0.59 Total: 47.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.91 -9.54 -47.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121659475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.344 kcal (2) G-P(sol) polarization free energy of solvation -37.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds