Wall clock time and date at job start Tue Mar 31 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46702 * 2 1 4 4 C 1.52999 * 109.47387 * 119.99779 * 2 1 3 5 5 S 1.81402 * 109.46950 * 65.00356 * 4 2 1 6 6 O 1.42101 * 108.57777 * 65.51211 * 5 4 2 7 7 O 1.42093 * 108.57764 * 294.48646 * 5 4 2 8 8 C 1.81396 * 101.92015 * 179.97438 * 5 4 2 9 9 C 1.53004 * 109.47142 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 5 11 11 O 1.21303 * 119.99816 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.27843 * 10 9 8 13 13 C 1.40595 * 119.99527 * 179.72943 * 12 10 9 14 14 C 1.40649 * 126.08553 * 359.68015 * 13 12 10 15 15 N 1.30903 * 108.38945 * 179.87998 * 14 13 12 16 16 N 1.40074 * 108.40705 * 0.38914 * 15 14 13 17 17 C 1.37320 * 126.07077 * 179.73305 * 16 15 14 18 18 H 1.07999 * 120.00028 * 180.02562 * 17 16 15 19 19 C 1.38983 * 120.00055 * 0.02562 * 17 16 15 20 20 N 1.31296 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47091 * 60.00391 * 21 19 17 23 23 H 1.48503 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47397 * 300.00434 * 21 19 17 25 25 C 1.35679 * 126.07814 * 179.97438 * 13 12 10 26 26 H 1.08999 * 109.47129 * 60.00068 * 1 2 3 27 27 H 1.09007 * 109.46789 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46910 * 299.99759 * 1 2 3 29 29 H 1.09006 * 109.47244 * 240.00275 * 2 1 3 30 30 H 1.09002 * 109.46976 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47273 * 299.99843 * 3 2 1 32 32 H 1.08992 * 109.46951 * 60.00141 * 3 2 1 33 33 H 1.08999 * 109.46983 * 305.00586 * 4 2 1 34 34 H 1.09002 * 109.46971 * 185.00292 * 4 2 1 35 35 H 1.08995 * 109.47437 * 60.00317 * 8 5 4 36 36 H 1.08998 * 109.47536 * 299.99858 * 8 5 4 37 37 H 1.09009 * 109.46730 * 59.99806 * 9 8 5 38 38 H 1.08998 * 109.46846 * 300.00350 * 9 8 5 39 39 H 0.97001 * 120.00485 * 359.71840 * 12 10 9 40 40 H 1.07999 * 125.80209 * 0.02562 * 14 13 12 41 41 H 0.97004 * 120.00252 * 179.97438 * 20 19 17 42 42 H 1.07996 * 126.24944 * 359.92772 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 1.5603 -2.4691 1.1766 6 8 2.2384 -3.0798 0.0873 7 8 0.1436 -2.5529 1.2468 8 6 2.2554 -3.1130 2.7234 9 6 1.9437 -4.6064 2.8399 10 6 2.5217 -5.1416 4.1246 11 8 3.1242 -4.4014 4.8733 12 7 2.3744 -6.4439 4.4388 13 6 2.9186 -6.9444 5.6347 14 6 3.6420 -6.2059 6.5884 15 7 3.9815 -7.0110 7.5632 16 7 3.4981 -8.2920 7.2676 17 6 3.6544 -9.4141 8.0435 18 1 3.2394 -10.3570 7.7193 19 6 4.3466 -9.3365 9.2462 20 7 4.8508 -8.1901 9.6407 21 14 4.5586 -10.8628 10.3021 22 1 5.2922 -11.8993 9.5322 23 1 5.3277 -10.5163 11.5242 24 1 3.2239 -11.3860 10.6895 25 6 2.8441 -8.2268 6.0713 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4427 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6442 1.2951 35 1 1.8148 -2.5834 3.5680 36 1 3.3354 -2.9658 2.7255 37 1 2.3839 -5.1365 1.9952 38 1 0.8636 -4.7533 2.8379 39 1 1.8929 -7.0359 3.8400 40 1 3.8754 -5.1532 6.5280 41 1 5.3336 -8.1358 10.4802 42 1 2.3562 -9.0465 5.5649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139384615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:37 Heat of formation + Delta-G solvation = -34.644598 kcal Electronic energy + Delta-G solvation = -25122.428807 eV Core-core repulsion = 21231.851157 eV Total energy + Delta-G solvation = -3890.577650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.97971 -38.70964 -37.27687 -36.86216 -36.14749 -34.32025 -33.33641 -33.03901 -30.25758 -28.52974 -27.93050 -27.57749 -25.54781 -24.32273 -21.17987 -20.87977 -20.16012 -19.47012 -19.13277 -17.83734 -17.26329 -16.72473 -16.36429 -16.02357 -15.59898 -15.44780 -15.19098 -15.03327 -14.38043 -14.11795 -13.80342 -13.68901 -13.40657 -13.04044 -12.94728 -12.92024 -12.68797 -12.57580 -12.46598 -12.22315 -11.82709 -11.70015 -11.65736 -11.45636 -11.45128 -11.30421 -11.25103 -11.12064 -10.98535 -10.57622 -10.46379 -10.20257 -9.28912 -9.18892 -8.83714 -8.08860 -6.73692 -6.57663 -4.25115 -0.32234 2.45793 2.75890 3.01279 3.03373 3.07592 3.19225 3.60930 3.64536 3.72782 3.86882 4.06893 4.25757 4.26763 4.37374 4.52103 4.61352 4.70309 4.84693 5.00243 5.02305 5.04938 5.11590 5.23588 5.34756 5.35221 5.41539 5.48966 5.60572 5.64388 5.78017 5.93641 6.22206 6.42393 6.86656 6.92317 7.07652 7.21200 7.83292 8.12593 8.24944 8.59158 8.79552 9.35342 9.64220 10.38300 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.045082 B = 0.001946 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.934643 B =14383.837321 C =14726.144698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.609 4.609 5 S 2.413 3.587 6 O -0.939 6.939 7 O -0.934 6.934 8 C -0.592 4.592 9 C -0.130 4.130 10 C 0.505 3.495 11 O -0.535 6.535 12 N -0.622 5.622 13 C -0.063 4.063 14 C -0.034 4.034 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.083 4.083 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.399 0.601 40 H 0.176 0.824 41 H 0.275 0.725 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 12.976 -16.974 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.738 4.738 5 S 2.597 3.403 6 O -0.936 6.936 7 O -0.931 6.931 8 C -0.721 4.721 9 C -0.171 4.171 10 C 0.289 3.711 11 O -0.412 6.412 12 N -0.264 5.264 13 C -0.168 4.168 14 C -0.209 4.209 15 N -0.092 5.092 16 N 0.091 4.909 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.234 4.234 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.232 0.768 40 H 0.192 0.808 41 H 0.086 0.914 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.964 13.061 -15.768 21.326 hybrid contribution -0.081 -0.496 0.050 0.505 sum -6.045 12.565 -15.718 21.011 Atomic orbital electron populations 1.22369 0.93774 1.04837 1.03087 1.20851 0.96836 0.97753 0.94865 1.21813 1.01262 0.94487 1.02403 1.30400 1.12159 1.23621 1.07605 1.08203 0.76286 0.78261 0.77584 1.93592 1.76186 1.74129 1.49659 1.93568 1.27345 1.85644 1.86581 1.30088 1.14682 1.05504 1.21832 1.21290 1.03863 0.92863 0.99086 1.19936 0.81671 0.82093 0.87365 1.90591 1.42123 1.57171 1.51330 1.42483 1.54023 1.08958 1.20977 1.17279 1.14103 0.93330 0.92110 1.24099 1.03124 1.00532 0.93146 1.78254 1.22464 0.87412 1.21072 1.44550 1.28927 1.06860 1.10606 1.19833 1.37295 0.86513 1.01920 0.86625 1.25648 0.95410 0.98566 0.97515 1.70207 1.25687 1.24002 1.19780 0.85885 0.79129 0.80135 0.78935 1.19140 1.20130 1.19148 1.21271 1.11793 0.96635 0.93685 0.91528 0.89934 0.91606 0.89637 0.92229 0.91960 0.92157 0.84634 0.84701 0.84059 0.84114 0.87540 0.87482 0.76790 0.80759 0.91393 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 8.83 37.16 0.33 -1.00 16 2 C -0.08 -0.56 2.92 -90.62 -0.26 -0.82 16 3 C -0.14 -0.76 9.19 37.16 0.34 -0.42 16 4 C -0.61 -3.59 5.26 37.16 0.20 -3.40 16 5 S 2.41 20.69 4.51 -107.50 -0.49 20.21 16 6 O -0.94 -11.02 18.10 -57.83 -1.05 -12.06 16 7 O -0.93 -10.34 15.46 -57.83 -0.89 -11.24 16 8 C -0.59 -5.42 5.09 37.16 0.19 -5.23 16 9 C -0.13 -1.43 5.71 -27.88 -0.16 -1.59 16 10 C 0.50 8.31 7.80 -10.98 -0.09 8.22 16 11 O -0.53 -10.74 13.13 5.54 0.07 -10.66 16 12 N -0.62 -10.73 5.47 -10.00 -0.05 -10.78 16 13 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 14 C -0.03 -0.88 10.85 -17.04 -0.18 -1.06 16 15 N -0.26 -7.57 10.40 30.80 0.32 -7.25 16 16 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 17 C -0.32 -8.53 10.25 -14.82 -0.15 -8.68 16 18 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -21.48 11.81 55.49 0.66 -20.82 16 21 Si 0.94 18.84 29.55 -169.99 -5.02 13.81 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.72 5.40 -51.92 -0.28 0.44 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.14 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.14 1.18 8.10 -51.92 -0.42 0.76 16 37 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 5.17 8.83 -40.82 -0.36 4.81 16 40 H 0.18 4.48 5.92 -52.49 -0.31 4.17 16 41 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -37.94 365.25 -7.64 -45.58 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.99 Total: 8.68 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.65 Total: -17.04 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.88 Total: -42.78 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.87 Total: -33.96 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 20.69 SS G_CDS: -0.49 Total: 20.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.94 -7.64 -45.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139384615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.933 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds